Rroxscaffold_4G00287700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000576
Physical Location & Seq
Forward (+)
8688879 .. 8692995
4117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00287700.1

Sequence Viewer

Length: 681 bp
ATGGCAGATTTTGGTATGCTTATTCTCTTCCTCGTTGTCAGGGGTAGCGTTGAGGCTGTGTTGATGTTGGGGATTGGGGGCGCCGTTGGATTTGTGTCCAAGCTCGACGGTGAAGTGCAAGATGCGGCCTCGTTTGCGGGGATGGCATCTAGGTGGCGGATGAGTGGTGATCGGGTCTTGGGTTGGTCAAGATCGGATCGAAAGGGTCGATTCCGATCGGGTCGAAGGGACGATGGTGCACCTACTTGCAATTATGCATTGAGCCGTCAGCCGCTCATCCCCAAGAGGAAGTCGATGGTGTTCCTTTACATCAACATCGGAAATGCAAAATGTACAGTCTTGGTTGTCAAGAACATGTTTCGACGAGGCGGCGCGCTCTTCCCTCGGGCAAGGTGGCGATCGTGGTACGGCAGGTACGGCGACGTGGGGCGGTACTCTAGTGTTGATCTTGTTTTTTGCGGCAAGAAGCATCCATTCGGGGCCTCTTCGATCGTGTCTCGGGTTTTCATTTCTAAACCGTTTGGCGGTGTTAGGATCGGCGGCGTACGGGTGGCCATGGATCGAGTGATCCGAGCGAGGGAGGTCGTGTTGGGGTTTGCGGTCACCGCCACTTCACGGCCGTTGCGGCACACGAGAAAGGAGGCGGGGTGTTTTCTCACGAAGCGCTTGATCGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.99

Weight (kDa)

11.38

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 80
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 1 cut(s) 374
AclWI GGATC 4 cut(s) 204, 542, 562, 567
AcoI YGGCCR 2 cut(s) 552, 617
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 5 cut(s) 334, 407, 416, 434, 546
AfeI AGCGCT 1 cut(s) 665
AfiI CCNNNNNNNGG 3 cut(s) 524, 577, 615
AflIII ACRYGT 1 cut(s) 354
AjiI CACGTC 1 cut(s) 424
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 501
Alw44I GTGCAC 1 cut(s) 237
AlwI GGATC 4 cut(s) 204, 542, 562, 567
Ama87I CYCGRG 2 cut(s) 384, 498
Aor51HI AGCGCT 1 cut(s) 665
AoxI GGCC 4 cut(s) 126, 480, 552, 617
ApaLI GTGCAC 1 cut(s) 237
AspLEI GCGC 4 cut(s) 83, 374, 376, 666
AspS9I GGNCC 1 cut(s) 480
AsuHPI GGTGA 3 cut(s) 122, 179, 595
AvaI CYCGRG 2 cut(s) 384, 498
BaeGI GKGCMC 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 424, 457
BalI TGGCCA 1 cut(s) 554
BanI GGYRCC 1 cut(s) 80
BauI CACGAG 1 cut(s) 631
Bbv12I GWGCWC 1 cut(s) 241
BccI CCATC 3 cut(s) 136, 227, 289
BceAI ACGGC 6 cut(s) 68, 249, 424, 433, 604, 632
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 2 cut(s) 150, 438
BfoI RGCGCY 2 cut(s) 84, 667
BfuAI ACCTGC 1 cut(s) 402
BglI GCCNNNNNGGC 1 cut(s) 625
BisI GCNGC 6 cut(s) 126, 272, 370, 460, 541, 626
BlsI GCNGC 6 cut(s) 127, 273, 371, 461, 542, 627
BmeT110I CYCGRG 2 cut(s) 384, 498
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 2 cut(s) 82, 481
BmsI GCATC 3 cut(s) 112, 155, 478
BsaBI GATNNNNATC 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 383, 555
BsaXI ACNNNNNCTCC 4 cut(s) 572, 602, 632, 662
Bsc4I CCNNNNNNNGG 3 cut(s) 524, 577, 615
Bse8I GATNNNNATC 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 383, 555
BseGI GGATG 4 cut(s) 147, 165, 276, 469
BseJI GATNNNNATC 1 cut(s) 214
BseLI CCNNNNNNNGG 3 cut(s) 524, 577, 615
BsePI GCGCGC 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 241
BseX3I CGGCCG 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 374
Bsh1285I CGRYCG 4 cut(s) 218, 401, 492, 620
BshFI GGCC 4 cut(s) 128, 482, 554, 619
BshNI GGYRCC 1 cut(s) 80
BsiEI CGRYCG 4 cut(s) 218, 401, 492, 620
BsiHKAI GWGCWC 1 cut(s) 241
BsiHKCI CYCGRG 2 cut(s) 384, 498
BsiWI CGTACG 1 cut(s) 544
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 524, 577, 615
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 4 cut(s) 128, 482, 554, 619
BsoBI CYCGRG 2 cut(s) 384, 498
Bsp1286I GDGCHC 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 332
Bsp19I CCATGG 1 cut(s) 555
BspANI GGCC 4 cut(s) 128, 482, 554, 619
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 2 cut(s) 82, 481
BspMI ACCTGC 1 cut(s) 402
BspPI GGATC 4 cut(s) 204, 542, 562, 567
BspQI GCTCTTC 1 cut(s) 383
BspT107I GGYRCC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 274
BsrGI TGTACA 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 383, 555
BssHII GCGCGC 1 cut(s) 372
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 631
BssT1I CCWWGG 1 cut(s) 555
Bst2BI CACGAG 1 cut(s) 631
Bst4CI ACNGT 3 cut(s) 110, 337, 519
Bst6I CTCTTC 3 cut(s) 32, 383, 490
BstACI GRCGYC 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 374
BstDSI CCRYGG 1 cut(s) 555
BstEII GGTNACC 1 cut(s) 601
BstF5I GGATG 4 cut(s) 147, 165, 276, 469
BstFNI CGCG 1 cut(s) 374
BstH2I RGCGCY 2 cut(s) 84, 667
BstHHI GCGC 4 cut(s) 83, 374, 376, 666
BstMAI GTCTC 1 cut(s) 501
BstMCI CGRYCG 4 cut(s) 218, 401, 492, 620
BstMWI GCNNNNNNNGC 5 cut(s) 134, 143, 417, 605, 625
BstNSI RCATGY 1 cut(s) 358
BstPI GGTNACC 1 cut(s) 601
BstSLI GKGCMC 1 cut(s) 241
BstUI CGCG 1 cut(s) 374
BstZI CGGCCG 1 cut(s) 617
BsuRI GGCC 4 cut(s) 128, 482, 554, 619
BtgI CCRYGG 1 cut(s) 555
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 4 cut(s) 147, 165, 276, 469
BveI ACCTGC 1 cut(s) 402
Cac8I GCNNGC 1 cut(s) 374
CfoI GCGC 4 cut(s) 83, 374, 376, 666
Cfr13I GGNCC 1 cut(s) 480
Csp6I GTAC 5 cut(s) 333, 406, 415, 433, 545
CviAII CATG 2 cut(s) 355, 556
CviJI RGCY 8 cut(s) 56, 103, 128, 264, 271, 482, 554, 619
CviKI_1 RGCY 8 cut(s) 56, 103, 128, 264, 271, 482, 554, 619
CviQI GTAC 5 cut(s) 333, 406, 415, 433, 545
DinI GGCGCC 1 cut(s) 82
EaeI YGGCCR 2 cut(s) 552, 617
EagI CGGCCG 1 cut(s) 617
Eam1104I CTCTTC 3 cut(s) 32, 383, 490
EarI CTCTTC 3 cut(s) 32, 383, 490
EciI GGCGGA 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 555
Eco47III AGCGCT 1 cut(s) 665
Eco52I CGGCCG 1 cut(s) 617
Eco88I CYCGRG 2 cut(s) 384, 498
Eco91I GGTNACC 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 480
EcoO65I GGTNACC 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 259
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 2 cut(s) 358, 559
FaiI YATR 4 cut(s) 17, 255, 356, 557
FaqI GGGAC 1 cut(s) 242
FatI CATG 2 cut(s) 354, 555
FauI CCCGC 2 cut(s) 130, 637
Fnu4HI GCNGC 6 cut(s) 126, 272, 370, 460, 541, 626
FokI GGATG 4 cut(s) 154, 172, 263, 456
Fsp4HI GCNGC 6 cut(s) 126, 272, 370, 460, 541, 626
FspBI CTAG 2 cut(s) 150, 438
GlaI GCGC 4 cut(s) 82, 373, 375, 665
GluI GCNGC 6 cut(s) 126, 272, 370, 460, 541, 626
HaeII RGCGCY 2 cut(s) 84, 667
HaeIII GGCC 4 cut(s) 128, 482, 554, 619
HhaI GCGC 4 cut(s) 83, 374, 376, 666
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 2 cut(s) 358, 559
Hin6I GCGC 4 cut(s) 81, 372, 374, 664
HinP1I GCGC 4 cut(s) 81, 372, 374, 664
HinfI GANTC 1 cut(s) 210
HphI GGTGA 3 cut(s) 122, 179, 595
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 4 cut(s) 196, 215, 320, 572
Hpy188III TCNNGA 4 cut(s) 189, 349, 658, 678
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 3 cut(s) 110, 366, 425
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 3 cut(s) 110, 337, 519
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 5 cut(s) 118, 239, 249, 257, 326
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 143, 417, 605, 625
HpySE526I ACGT 1 cut(s) 423
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 358, 559
HspAI GCGC 4 cut(s) 81, 372, 374, 664
KasI GGCGCC 1 cut(s) 80
LguI GCTCTTC 1 cut(s) 383
LpnPI CCDG 2 cut(s) 25, 397
LweI GCATC 3 cut(s) 112, 155, 478
MaeI CTAG 2 cut(s) 150, 438
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 601
MbiI CCGCTC 1 cut(s) 274
MboII GAAGA 3 cut(s) 19, 370, 477
MhlI GDGCHC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 1 cut(s) 250
MluNI TGGCCA 1 cut(s) 554
Mly113I GGCGCC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 67
Mox20I TGGCCA 1 cut(s) 554
Mph1103I ATGCAT 1 cut(s) 259
MscI TGGCCA 1 cut(s) 554
MslI CAYNNNNRTG 1 cut(s) 151
Msp20I TGGCCA 1 cut(s) 554
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 5 cut(s) 134, 143, 417, 605, 625
NarI GGCGCC 1 cut(s) 81
NcoI CCATGG 1 cut(s) 555
NlaIII CATG 2 cut(s) 358, 559
NlaIV GGNNCC 2 cut(s) 82, 481
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 1 cut(s) 358
PauI GCGCGC 1 cut(s) 372
PciI ACATGT 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 383
PcsI WCGNNNNNNNCGW 2 cut(s) 205, 568
PfeI GAWTC 1 cut(s) 210
Pfl23II CGTACG 1 cut(s) 544
PkrI GCNGC 6 cut(s) 127, 273, 371, 461, 542, 627
Ple19I CGATCG 3 cut(s) 218, 401, 492
PluTI GGCGCC 1 cut(s) 84
PscI ACATGT 1 cut(s) 354
PspEI GGTNACC 1 cut(s) 601
PspLI CGTACG 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 82, 481
PspPI GGNCC 1 cut(s) 480
PteI GCGCGC 1 cut(s) 372
PvuI CGATCG 3 cut(s) 218, 401, 492
RsaI GTAC 5 cut(s) 334, 407, 416, 434, 546
RsaNI GTAC 5 cut(s) 333, 406, 415, 433, 545
RseI CAYNNNNRTG 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 383
SatI GCNGC 6 cut(s) 126, 272, 370, 460, 541, 626
Sau96I GGNCC 1 cut(s) 480
SduI GDGCHC 1 cut(s) 241
SetI ASST 7 cut(s) 105, 155, 244, 395, 416, 426, 585
SfaNI GCATC 3 cut(s) 112, 155, 478
SfoI GGCGCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 1 cut(s) 250
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 2 cut(s) 150, 438
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 3 cut(s) 110, 337, 519
TaiI ACGT 1 cut(s) 426
TaqI TCGA 8 cut(s) 105, 199, 208, 223, 293, 361, 488, 562
TasI AATT 1 cut(s) 250
TatI WGTACW 1 cut(s) 332
TauI GCSGC 6 cut(s) 128, 274, 372, 462, 543, 628
TfiI GAWTC 1 cut(s) 210
TseFI GTSAC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 1 cut(s) 496
VneI GTGCAC 1 cut(s) 237
XceI RCATGY 1 cut(s) 358
XspI CTAG 2 cut(s) 150, 438
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.