Rh4DG037400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000576
Physical Location & Seq
Reverse (-)
6084706 .. 6084924
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG037400.1

Sequence Viewer

Length: 219 bp
ATGTGGGCGGATCTGTTGTTCTCCGACCCGGGTAGCTCGTTGGCGGGGCTGTTGGCGTGGCTTTGCTCATCAAAGAAGATTACCTCTGGGGATAGTGACTGGTGCAGCAACGGGGTCTACCACGTCGGCGATGGTGGAGGCTTGCTGGTTGACGGCGAAGGTGTGCTGGTCCTGTGGGGTGGTTCTTGTGGGGTGCCCTTAGCAACGGGGTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.26

Weight (kDa)

4.05

Isoelectric Point (pI)

25.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 193, 210
AccI GTMKAC 1 cut(s) 117
AciI CCGC 2 cut(s) 8, 44
AclWI GGATC 1 cut(s) 18
AjiI CACGTC 1 cut(s) 124
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
AlwI GGATC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 2 cut(s) 29, 30
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 2 cut(s) 198, 215
BanI GGYRCC 2 cut(s) 193, 210
BbvI GCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 169
BcnI CCSGG 2 cut(s) 29, 30
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 29, 30
Bme18I GGWCC 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 28
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 2 cut(s) 195, 212
BmrFI CCNGG 2 cut(s) 29, 30
Bpu10I CCTNAGC 1 cut(s) 199
BpuMI CCSGG 2 cut(s) 29, 30
BsaJI CCNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 104
BseSI GKGCMC 2 cut(s) 198, 215
BseXI GCAGC 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 124
BshNI GGYRCC 2 cut(s) 193, 210
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 2 cut(s) 198, 215
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 2 cut(s) 8, 44
BspLI GGNNCC 2 cut(s) 195, 212
BspPI GGATC 1 cut(s) 18
BspT107I GGYRCC 2 cut(s) 193, 210
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 199, 216
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 27, 28
BstSLI GKGCMC 2 cut(s) 198, 215
BstV1I GCAGC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 169
Cfr9I CCCGGG 1 cut(s) 28
CviJI RGCY 4 cut(s) 36, 49, 61, 141
CviKI_1 RGCY 4 cut(s) 36, 49, 61, 141
DdeI CTNAG 2 cut(s) 199, 216
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 28
FauI CCCGC 1 cut(s) 37
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 106
HapII CCGG 1 cut(s) 29
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HpaII CCGG 1 cut(s) 29
Hpy166II GTNNAC 2 cut(s) 118, 151
Hpy188I TCNGA 1 cut(s) 25
Hpy8I GTNNAC 2 cut(s) 118, 151
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 199, 216
HpySE526I ACGT 1 cut(s) 123
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 6 cut(s) 42, 72, 85, 131, 152, 185
Lsp1109I GCAGC 1 cut(s) 117
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 198, 215
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 2 cut(s) 94, 131
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 29, 30
NciI CCSGG 2 cut(s) 29, 30
NdeII GATC 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 195, 212
NmuCI GTSAC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 195, 212
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 1 cut(s) 10
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 2 cut(s) 29, 30
SduI GDGCHC 2 cut(s) 198, 215
SetI ASST 4 cut(s) 38, 86, 126, 163
SinI GGWCC 1 cut(s) 169
SmaI CCCGGG 1 cut(s) 30
SsiI CCGC 2 cut(s) 8, 44
StyD4I CCNGG 2 cut(s) 27, 28
TaiI ACGT 1 cut(s) 126
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 95
TspMI CCCGGG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmaI CCCGGG 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.