Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000576

Physical Location & Seq

Genomic Coordinates Forward (+)

72534143 .. 72534949

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG503300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTAGTGATGGCAGGTCTTGATCTGCTTATGCTTTTCTTAATAACTTTGGGGAACACTGATGTTGTATTGCGTTCTGGGGTTGCAGGTGCTGTTGTTTTTGCGTCCAAGCTTGATGGTGTTGATCTGTGGTGTGTAGGAGATCTTGTTATCCCTGATGGTGACGGAGTGCTGGCTTGCTCTAAACTAGGGACTATTATTTCTAATGGTGGTGCTCATAGATCTAACGACTGCAAGTGTGGAGGCAAGAGCGACTGTCAAAACCAACCAGGGTTGTCGGAGATGAGGGCGAATCTGCTTACCCCCGGCCTGGGCACTCCAGTGGTAGGGATGATGGTATGGCTCTGCTCTTCGGAGAAGATTACTTCTGATGGTGATGCTGCCTGGTGCAGCGATGGGATTTACCATGTAGGTGGTGGCGGTGGCTTATTAGTTGGCTGCGACGGTGTGCCTGTCCAGTGGGGTGGATCCTGTGGGGTGCCCTTAGCAATTTCTGCTTGGGCCCTCTGTGGTTCACTCTGTTTTGTGGGCTCTATGCAAGGCTGGGTTTGGGTGGGCTGCACATTCTATTTTAGGATTTGGGCTGCCTTTGTTAAGGGAGTGGATGGTGATATGTTACCTTTCACTCCAATTACAAATGAAGCGTCTTTCAGAGAACAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

22.95

Weight (kDa)

4.48

Isoelectric Point (pI)

24.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496101
rosa_laevigata	RLG00000001000 RLG00000003686 RLG00000004631 RLG00000004905 RLG00000005430 RLG00000005713 RLG00000007389 RLG00000011894 RLG00000014857 RLG00000017726 RLG00000020028 RLG00000020869 RLG00000021046 RLG00000023109 RLG00000026629 RLG00000027568 RLG00000027741 RLG00000027989 RLG00000029466 RLG00000032523 RLG00000034953 RLG00000035012 RLG00000036930
rosa_multiflora	Rmu_sc0001298.1_g000014 Rmu_sc0010937.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236180 Rroxscaffold_4G00282370 Rroxscaffold_4G00287700 Rroxscaffold_5G00344480 Rroxscaffold_6G00420630
rosa_rugosa	Rorug04G0441100 Rorug07G0282000
rosa_samantha	Rh1AG357100 Rh1BG076300 Rh1BG240500 Rh1BG369300 Rh1CG024800 Rh1CG092500 Rh1DG099000 Rh1DG268800 Rh2AG264600 Rh2AG530800 Rh2AG530900 Rh2BG059300 Rh2BG494200 Rh2BG521900 Rh2BG545400 Rh2CG061100 Rh2CG515200 Rh2DG271900 Rh2DG503300 Rh2DG531800 Rh3AG105800 Rh3AG326600 Rh3BG110000 Rh3CG111500 Rh3DG111600 Rh4AG180600 Rh4CG191700 Rh4DG037400 Rh5AG112900 Rh5AG149800 Rh5AG470600 Rh5BG490300 Rh5BG551700 Rh5CG160600 Rh5CG514300 Rh5CG574500 Rh5DG108700 Rh5DG114200 Rh5DG148200 Rh5DG298500 Rh5DG416900 Rh6CG280200 Rh6CG397900 Rh6DG215700 Rh6DG231300 Rh6DG272800 Rh7CG104800 Rh7CG247000 Rh7DG211100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
Acc36I	ACCTGC	2 cut(s)	5, 77
AccB1I	GGYRCC	1 cut(s)	478
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	2 cut(s)	462, 475
AfiI	CCNNNNNNNGG	3 cut(s)	310, 311, 326
AjnI	CCWGG	3 cut(s)	268, 309, 383
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	2 cut(s)	462, 475
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	307, 501
ApaI	GGGCCC	1 cut(s)	505
ApeKI	GCWGC	5 cut(s)	380, 390, 438, 558, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AspS9I	GGNCC	2 cut(s)	501, 502
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	173, 386, 620
BaeGI	GKGCMC	3 cut(s)	317, 483, 505
BamHI	GGATCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	2 cut(s)	505, 533
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	5 cut(s)	367, 402, 425, 545, 571
BccI	CCATC	7 cut(s)	4, 110, 152, 328, 365, 389, 599
BciT130I	CCWGG	3 cut(s)	270, 311, 385
BcnI	CCSGG	1 cut(s)	306
BfaI	CTAG	1 cut(s)	188
BfuAI	ACCTGC	2 cut(s)	5, 77
BglII	AGATCT	2 cut(s)	142, 221
BisI	GCNGC	5 cut(s)	381, 391, 439, 559, 585
BlsI	GCNGC	5 cut(s)	382, 392, 440, 560, 586
Bme1390I	CCNGG	4 cut(s)	270, 306, 311, 385
BmgT120I	GGNCC	2 cut(s)	501, 502
BmiI	GGNNCC	3 cut(s)	469, 480, 503
BmrFI	CCNGG	4 cut(s)	270, 306, 311, 385
BmsI	GCATC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	269, 304, 310
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 311, 326
Bse1I	ACTGG	2 cut(s)	320, 457
BseBI	CCWGG	3 cut(s)	270, 311, 385
BseDI	CCNNGG	3 cut(s)	269, 304, 310
BseGI	GGATG	2 cut(s)	336, 610
BseLI	CCNNNNNNNGG	3 cut(s)	310, 311, 326
BseNI	ACTGG	2 cut(s)	320, 457
BseSI	GKGCMC	3 cut(s)	317, 483, 505
BseXI	GCAGC	5 cut(s)	367, 402, 425, 545, 571
BseYI	CCCAGC	1 cut(s)	543
BsgI	GTGCAG	2 cut(s)	409, 544
BshFI	GGCC	2 cut(s)	309, 503
BshNI	GGYRCC	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	3 cut(s)	310, 311, 326
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	309, 503
Bsp120I	GGGCCC	1 cut(s)	501
Bsp1286I	GDGCHC	5 cut(s)	217, 317, 483, 505, 533
Bsp143I	GATC	5 cut(s)	22, 124, 142, 221, 467
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	2 cut(s)	309, 503
BspLI	GGNNCC	3 cut(s)	469, 480, 503
BspMI	ACCTGC	2 cut(s)	5, 77
BspPI	GGATC	2 cut(s)	462, 475
BspQI	GCTCTTC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	320, 457
BssECI	CCNNGG	3 cut(s)	269, 304, 310
BssMI	GATC	5 cut(s)	22, 124, 142, 221, 467
Bst2UI	CCWGG	3 cut(s)	270, 311, 385
Bst4CI	ACNGT	2 cut(s)	257, 446
Bst6I	CTCTTC	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstC8I	GCNNGC	2 cut(s)	174, 178
BstDEI	CTNAG	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	336, 610
BstKTI	GATC	5 cut(s)	25, 127, 145, 224, 470
BstMBI	GATC	5 cut(s)	22, 124, 142, 221, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNI	CCWGG	3 cut(s)	270, 311, 385
BstSCI	CCNGG	4 cut(s)	268, 304, 309, 383
BstSLI	GKGCMC	3 cut(s)	317, 483, 505
BstV1I	GCAGC	5 cut(s)	367, 402, 425, 545, 571
BstX2I	RGATCY	3 cut(s)	142, 221, 467
BstXI	CCANNNNNNTGG	2 cut(s)	413, 464
BstYI	RGATCY	3 cut(s)	142, 221, 467
BsuRI	GGCC	2 cut(s)	309, 503
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	336, 610
BtsIMutI	CAGTG	3 cut(s)	57, 327, 464
BveI	ACCTGC	2 cut(s)	5, 77
Cac8I	GCNNGC	2 cut(s)	174, 178
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	501, 502
CseI	GACGC	2 cut(s)	93, 633
CviAII	CATG	1 cut(s)	407
DdeI	CTNAG	1 cut(s)	484
DpnI	GATC	5 cut(s)	24, 126, 144, 223, 469
DpnII	GATC	5 cut(s)	22, 124, 142, 221, 467
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco24I	GRGCYC	2 cut(s)	505, 533
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	3 cut(s)	268, 309, 383
EcoT38I	GRGCYC	2 cut(s)	505, 533
FaeI	CATG	1 cut(s)	410
FaiI	YATR	6 cut(s)	32, 219, 340, 408, 536, 614
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	406
Fnu4HI	GCNGC	5 cut(s)	381, 391, 439, 559, 585
FokI	GGATG	2 cut(s)	343, 617
FriOI	GRGCYC	2 cut(s)	505, 533
Fsp4HI	GCNGC	5 cut(s)	381, 391, 439, 559, 585
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	5 cut(s)	381, 391, 439, 559, 585
GsaI	CCCAGC	1 cut(s)	547
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	309, 503
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	2 cut(s)	93, 633
Hin1II	CATG	1 cut(s)	410
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	3 cut(s)	173, 386, 620
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	4 cut(s)	280, 355, 370, 653
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	515
Hpy99I	CGWCG	1 cut(s)	446
HpyCH4III	ACNGT	2 cut(s)	257, 446
HpyCH4V	TGCA	5 cut(s)	86, 234, 390, 538, 561
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	1 cut(s)	484
Hsp92II	CATG	1 cut(s)	410
Kzo9I	GATC	5 cut(s)	22, 124, 142, 221, 467
LguI	GCTCTTC	1 cut(s)	355
Lsp1109I	GCAGC	5 cut(s)	367, 402, 425, 545, 571
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	161, 615
MalI	GATC	5 cut(s)	24, 126, 144, 223, 469
MboI	GATC	5 cut(s)	22, 124, 142, 221, 467
MboII	GAAGA	2 cut(s)	342, 370
MflI	RGATCY	3 cut(s)	142, 221, 467
MhlI	GDGCHC	5 cut(s)	217, 317, 483, 505, 533
MluCI	AATT	2 cut(s)	489, 630
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	3 cut(s)	236, 279, 515
MseI	TTAA	2 cut(s)	41, 594
MslI	CAYNNNNRTG	2 cut(s)	320, 411
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	4 cut(s)	270, 306, 311, 385
MvaI	CCWGG	3 cut(s)	270, 311, 385
MwoI	GCNNNNNNNGC	1 cut(s)	494
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	22, 124, 142, 221, 467
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	3 cut(s)	469, 480, 503
NmuCI	GTSAC	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	320
PaqCI	CACCTGC	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	5 cut(s)	382, 392, 440, 560, 586
Psp6I	CCWGG	3 cut(s)	268, 309, 383
PspFI	CCCAGC	1 cut(s)	543
PspGI	CCWGG	3 cut(s)	268, 309, 383
PspN4I	GGNNCC	3 cut(s)	469, 480, 503
PspOMI	GGGCCC	1 cut(s)	501
PspPI	GGNCC	2 cut(s)	501, 502
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	3 cut(s)	142, 221, 467
RseI	CAYNNNNRTG	2 cut(s)	320, 411
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	41, 594
SatI	GCNGC	5 cut(s)	381, 391, 439, 559, 585
Sau3AI	GATC	5 cut(s)	22, 124, 142, 221, 467
Sau96I	GGNCC	2 cut(s)	501, 502
ScrFI	CCNGG	4 cut(s)	270, 306, 311, 385
SduI	GDGCHC	5 cut(s)	217, 317, 483, 505, 533
SetI	ASST	5 cut(s)	19, 91, 114, 415, 622
SfaNI	GCATC	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	320, 411
Sse9I	AATT	2 cut(s)	489, 630
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	4 cut(s)	268, 304, 309, 383
TaaI	ACNGT	2 cut(s)	257, 446
TasI	AATT	2 cut(s)	489, 630
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	41, 594
Tru9I	TTAA	2 cut(s)	41, 594
TscAI	CASTG	3 cut(s)	64, 327, 464
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	5 cut(s)	380, 390, 438, 558, 584
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	654
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	3 cut(s)	64, 327, 464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.