RLG00000032523

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000576
Physical Location & Seq
Forward (+)
16091989 .. 16092571
583 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032523

Sequence Viewer

Length: 450 bp
ATGGCGGTTATGGTAGATTTTGGTCTGCTTATTCTCTTCCTCGTTGCGCTGGGTAGCGCTGAGGCTGTGTTGATGTCAGAGGTCGGGGGCGCTGTTGGATCTGCGTCCAAGCTCGACGATGAAGTGCAAGATGTGGCCTCGTTTACAAGGATGGCATCTAGGTGTACGTGCTGCTTTGCTCGGACTCGGGGACTGTTGCTTTGGATGGCGGTGCTATTAGATGTAATGGCTGCAAGTGTGGTGGCAAGGGCGGCTGTCAAATTGTGTCGACTACCGGAGGTTAGGACGGCCCTGCTTTCCTCGAGCTTGGACCCTTTGTTGGCGGGGATGACAGCTTGGTTCTACTCGACGGTGGTTGGATGTACGACATCGGTGGCGGCAGCGACGGCTTGCAAATCGGAGACGATGGTGGGCTGGAACAGGGGGGTGGAGTCTATGGGTTGTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.58

Weight (kDa)

5.33

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 268
AciI CCGC 5 cut(s) 5, 209, 251, 323, 377
AclWI GGATC 1 cut(s) 106
AfaI GTAC 2 cut(s) 166, 364
AfeI AGCGCT 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 319
AluBI AGCT 3 cut(s) 112, 306, 335
AluI AGCT 3 cut(s) 112, 306, 335
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 106
Ama87I CYCGRG 2 cut(s) 186, 301
Aor51HI AGCGCT 1 cut(s) 58
AoxI GGCC 2 cut(s) 135, 288
ApeKI GCWGC 3 cut(s) 171, 230, 380
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
AspLEI GCGC 3 cut(s) 49, 59, 92
AspS9I GGNCC 2 cut(s) 289, 310
AvaI CYCGRG 2 cut(s) 186, 301
AvaII GGWCC 1 cut(s) 310
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 3 cut(s) 158, 217, 392
BccI CCATC 3 cut(s) 145, 199, 400
BceAI ACGGC 2 cut(s) 303, 402
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 159
BfoI RGCGCY 2 cut(s) 60, 93
BisI GCNGC 5 cut(s) 172, 231, 252, 378, 381
BlsI GCNGC 5 cut(s) 173, 232, 253, 379, 382
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 2 cut(s) 186, 301
BmgT120I GGNCC 2 cut(s) 289, 310
BmiI GGNNCC 1 cut(s) 312
BmsI GCATC 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 319
BseGI GGATG 4 cut(s) 156, 210, 333, 365
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 51
BseXI GCAGC 3 cut(s) 158, 217, 392
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 2 cut(s) 137, 290
BsiHKCI CYCGRG 2 cut(s) 186, 301
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 395
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 2 cut(s) 137, 290
BsoBI CYCGRG 2 cut(s) 186, 301
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 5 cut(s) 5, 209, 251, 323, 377
BspANI GGCC 2 cut(s) 137, 290
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 1 cut(s) 106
BssMI GATC 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 195, 352
Bst6I CTCTTC 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 2 cut(s) 60, 447
BstF5I GGATG 4 cut(s) 156, 210, 333, 365
BstH2I RGCGCY 2 cut(s) 60, 93
BstHHI GCGC 3 cut(s) 49, 59, 92
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 251, 386
BstV1I GCAGC 3 cut(s) 158, 217, 392
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BsuRI GGCC 2 cut(s) 137, 290
BtsCI GGATG 4 cut(s) 156, 210, 333, 365
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 3 cut(s) 49, 59, 92
Cfr13I GGNCC 2 cut(s) 289, 310
CseI GACGC 1 cut(s) 93
Csp6I GTAC 2 cut(s) 165, 363
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviQI GTAC 2 cut(s) 165, 363
DdeI CTNAG 2 cut(s) 60, 447
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 310
Eco47III AGCGCT 1 cut(s) 58
Eco88I CYCGRG 2 cut(s) 186, 301
Esp3I CGTCTC 1 cut(s) 395
FaiI YATR 2 cut(s) 11, 437
FaqI GGGAC 1 cut(s) 204
FauI CCCGC 1 cut(s) 316
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 5 cut(s) 172, 231, 252, 378, 381
FokI GGATG 4 cut(s) 163, 217, 340, 372
Fsp4HI GCNGC 5 cut(s) 172, 231, 252, 378, 381
FspBI CTAG 1 cut(s) 159
GlaI GCGC 3 cut(s) 48, 58, 91
GluI GCNGC 5 cut(s) 172, 231, 252, 378, 381
GsaI CCCAGC 1 cut(s) 53
HaeII RGCGCY 2 cut(s) 60, 93
HaeIII GGCC 2 cut(s) 137, 290
HapII CCGG 1 cut(s) 275
HgaI GACGC 1 cut(s) 93
HhaI GCGC 3 cut(s) 49, 59, 92
Hin6I GCGC 3 cut(s) 47, 57, 90
HinP1I GCGC 3 cut(s) 47, 57, 90
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HinfI GANTC 2 cut(s) 184, 431
HpaII CCGG 1 cut(s) 275
Hpy166II GTNNAC 3 cut(s) 144, 165, 269
Hpy188I TCNGA 3 cut(s) 79, 183, 400
Hpy8I GTNNAC 3 cut(s) 144, 165, 269
Hpy99I CGWCG 3 cut(s) 119, 352, 388
HpyCH4III ACNGT 2 cut(s) 195, 352
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 127, 233, 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 386
HpyF3I CTNAG 2 cut(s) 60, 447
HpySE526I ACGT 1 cut(s) 167
HspAI GCGC 3 cut(s) 47, 57, 90
Kzo9I GATC 1 cut(s) 98
LpnPI CCDG 5 cut(s) 35, 288, 305, 400, 406
Lsp1109I GCAGC 3 cut(s) 158, 217, 392
LweI GCATC 1 cut(s) 164
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 167
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 1 cut(s) 28
MflI RGATCY 1 cut(s) 98
MluCI AATT 1 cut(s) 260
MlyI GAGTC 2 cut(s) 178, 440
MmeI TCCRAC 2 cut(s) 76, 337
MnlI CCTC 6 cut(s) 50, 55, 73, 148, 271, 310
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 251, 386
NdeII GATC 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 312
PaeR7I CTCGAG 1 cut(s) 301
PkrI GCNGC 5 cut(s) 173, 232, 253, 379, 382
PleI GAGTC 2 cut(s) 178, 439
PpsI GAGTC 2 cut(s) 178, 439
Ppu21I YACGTR 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 289, 310
PspXI VCTCGAGB 1 cut(s) 301
PsuI RGATCY 1 cut(s) 98
RsaI GTAC 2 cut(s) 166, 364
RsaNI GTAC 2 cut(s) 165, 363
RseI CAYNNNNRTG 1 cut(s) 160
SalI GTCGAC 1 cut(s) 267
SatI GCNGC 5 cut(s) 172, 231, 252, 378, 381
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 2 cut(s) 289, 310
SchI GAGTC 2 cut(s) 178, 440
SetI ASST 7 cut(s) 84, 114, 164, 170, 282, 308, 337
SfaNI GCATC 1 cut(s) 164
Sfr274I CTCGAG 1 cut(s) 301
SinI GGWCC 1 cut(s) 310
SlaI CTCGAG 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 1 cut(s) 260
SsiI CCGC 5 cut(s) 5, 209, 251, 323, 377
SspMI CTAG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 195, 352
TaiI ACGT 1 cut(s) 170
TaqI TCGA 4 cut(s) 114, 268, 302, 347
TasI AATT 1 cut(s) 260
TauI GCSGC 2 cut(s) 254, 380
TseI GCWGC 3 cut(s) 171, 230, 380
TspDTI ATGAA 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 310
XhoI CTCGAG 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 268
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.