RLG00000021046

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000576
Physical Location & Seq
Reverse (-)
71361820 .. 71365251
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021046

Sequence Viewer

Length: 750 bp
ATGGTAACCGTCCCTTTGATCATTCTGAAAAAAGGTTTTGATAGACATTTGGTGGACGGGATCCGCAATACGTATCAAGATTTTTATTGCCCCTTGAACTGTAGGAGCTCGGGGAGGGGGAGTCGTACCTACTGTTGTCCTTCATCCTCGAGGTGTTCAAGGAATAGCCAGTTGGCCATTTTTGCTCTTCGTCTCTCCTCTTCCCTTATAAAATGGTACATACCTCACAGCCTCTGCAACCCTTGCATTCAGCTCGGCCCAAATGGCTATCTTTCAGCTTCTCGCCTCCATCCTCTCCTCTCATGTTTCTCCGTTCTGCTTGGCCACCCCCTCCGTCCTTTCCTCTCATGTTTCTCCGTTCTGCTTGGCCACCCCCTCCGTCCTTTCCCCTCCTGTTTCTCCCTTCTGCTTGGCCACCCCCTCCATCCTTTCCTCTCCTGTTTCTCCCTTATGTTTGGCCACCCCCTCCACCCAAATGCCTATCTCTCAGCTTCTCGCCTCCACCCATGCCTTACTCTCCTTTTCCCCTCCACCACGCCGTTTGGCTACTTCACTTACCCTTATCAGTACTCCGCAGCTGATAATGATGGTTCAGACGATGAAAAGTTCCATCTTTACAAAAAACCTTCTGATCATCTTTACTTGCCACCAGAAATGTACAGACTGCCTTCAAATGAGATTTTCATTCTGGAAGGACTGAAAGAGATACTATCTCAATCCTTCGACAGTTTGAAATACGATGTGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.2

Weight (kDa)

8.7

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AbsI CCTCGAGG 1 cut(s) 148
AciI CCGC 2 cut(s) 64, 573
AclWI GGATC 2 cut(s) 55, 68
AcoI YGGCCR 5 cut(s) 174, 322, 367, 412, 457
AfaI GTAC 4 cut(s) 127, 218, 569, 659
AgsI TTSAA 4 cut(s) 97, 159, 672, 733
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 5 cut(s) 108, 253, 278, 491, 578
AluI AGCT 5 cut(s) 108, 253, 278, 491, 578
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 55, 68
AlwNI CAGNNNCTG 1 cut(s) 234
Ama87I CYCGRG 2 cut(s) 109, 148
AoxI GGCC 6 cut(s) 174, 256, 322, 367, 412, 457
ApeKI GCWGC 1 cut(s) 575
AspS9I GGNCC 1 cut(s) 257
AvaI CYCGRG 2 cut(s) 109, 148
BalI TGGCCA 5 cut(s) 176, 324, 369, 414, 459
BamHI GGATCC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 587
BccI CCATC 4 cut(s) 297, 432, 581, 618
BceAI ACGGC 1 cut(s) 523
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BclI TGATCA 2 cut(s) 18, 631
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 748
BfmI CTRYAG 1 cut(s) 100
BglI GCCNNNNNGGC 1 cut(s) 264
BisI GCNGC 1 cut(s) 576
BlsI GCNGC 1 cut(s) 577
BmcAI AGTACT 1 cut(s) 569
BmeT110I CYCGRG 2 cut(s) 109, 148
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bse1I ACTGG 1 cut(s) 169
BseGI GGATG 3 cut(s) 143, 289, 424
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 2 cut(s) 187, 287
BseXI GCAGC 1 cut(s) 587
BshFI GGCC 6 cut(s) 176, 258, 324, 369, 414, 459
BsiHKAI GWGCWC 1 cut(s) 110
BsiHKCI CYCGRG 2 cut(s) 109, 148
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 6 cut(s) 176, 258, 324, 369, 414, 459
BsoBI CYCGRG 2 cut(s) 109, 148
Bsp1286I GDGCHC 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 657
Bsp143I GATC 3 cut(s) 18, 60, 631
BspACI CCGC 2 cut(s) 64, 573
BspANI GGCC 6 cut(s) 176, 258, 324, 369, 414, 459
BspCNI CTCAG 1 cut(s) 500
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 2 cut(s) 55, 68
BspQI GCTCTTC 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 657
BsrI ACTGG 1 cut(s) 169
BssMI GATC 3 cut(s) 18, 60, 631
Bst4CI ACNGT 4 cut(s) 10, 101, 134, 728
Bst6I CTCTTC 2 cut(s) 192, 205
BstAPI GCANNNNNTGC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 657
BstBAI YACGTR 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 487
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 3 cut(s) 143, 289, 424
BstKTI GATC 3 cut(s) 21, 63, 634
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 3 cut(s) 18, 60, 631
BstMWI GCNNNNNNNGC 3 cut(s) 182, 243, 264
BstPI GGTNACC 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 100
BstSNI TACGTA 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 587
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 6 cut(s) 176, 258, 324, 369, 414, 459
BtsCI GGATG 3 cut(s) 143, 289, 424
CaiI CAGNNNCTG 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 4 cut(s) 126, 217, 568, 658
CspCI CAANNNNNGTGG 2 cut(s) 523, 558
CviAII CATG 3 cut(s) 303, 348, 507
CviQI GTAC 4 cut(s) 126, 217, 568, 658
DdeI CTNAG 1 cut(s) 487
DpnI GATC 3 cut(s) 20, 62, 633
DpnII GATC 3 cut(s) 18, 60, 631
EaeI YGGCCR 5 cut(s) 174, 322, 367, 412, 457
Eam1104I CTCTTC 2 cut(s) 192, 205
EarI CTCTTC 2 cut(s) 192, 205
Ecl136II GAGCTC 1 cut(s) 108
Eco105I TACGTA 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 108
Eco88I CYCGRG 2 cut(s) 109, 148
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 108
EcoO65I GGTNACC 1 cut(s) 4
EcoT38I GRGCYC 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 3 cut(s) 306, 351, 510
FaiI YATR 6 cut(s) 209, 221, 304, 349, 452, 508
FatI CATG 3 cut(s) 302, 347, 506
FbaI TGATCA 2 cut(s) 18, 631
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 3 cut(s) 130, 276, 411
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 576
FspBI CTAG 1 cut(s) 748
GluI GCNGC 1 cut(s) 576
HaeIII GGCC 6 cut(s) 176, 258, 324, 369, 414, 459
Hin1II CATG 3 cut(s) 306, 351, 510
HinfI GANTC 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 27, 595, 631
Hpy188III TCNNGA 2 cut(s) 77, 689
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 6 cut(s) 150, 413, 636, 678, 686, 730
HpyCH4III ACNGT 4 cut(s) 10, 101, 134, 728
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 237, 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 243, 264
HpyF3I CTNAG 1 cut(s) 487
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 3 cut(s) 306, 351, 510
Ksp22I TGATCA 2 cut(s) 18, 631
Kzo9I GATC 3 cut(s) 18, 60, 631
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 5 cut(s) 182, 406, 451, 663, 674
Lsp1109I GCAGC 1 cut(s) 587
MaeI CTAG 1 cut(s) 748
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 4, 742
MalI GATC 3 cut(s) 20, 62, 633
MboI GATC 3 cut(s) 18, 60, 631
MboII GAAGA 2 cut(s) 179, 192
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 110
MlsI TGGCCA 5 cut(s) 176, 324, 369, 414, 459
MluNI TGGCCA 5 cut(s) 176, 324, 369, 414, 459
MlyI GAGTC 1 cut(s) 130
Mox20I TGGCCA 5 cut(s) 176, 324, 369, 414, 459
MscI TGGCCA 5 cut(s) 176, 324, 369, 414, 459
MslI CAYNNNNRTG 1 cut(s) 474
Msp20I TGGCCA 5 cut(s) 176, 324, 369, 414, 459
MspA1I CMGCKG 1 cut(s) 578
Mva1269I GAATGC 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 182, 243, 264
NdeII GATC 3 cut(s) 18, 60, 631
NlaIII CATG 3 cut(s) 306, 351, 510
NlaIV GGNNCC 1 cut(s) 62
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 742
PaeR7I CTCGAG 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 192
PctI GAATGC 1 cut(s) 246
PkrI GCNGC 1 cut(s) 577
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
Ppu21I YACGTR 1 cut(s) 72
PsiI TTATAA 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 110
PspEI GGTNACC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 257
PspXI VCTCGAGB 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 234
PsuI RGATCY 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 4 cut(s) 127, 218, 569, 659
RsaNI GTAC 4 cut(s) 126, 217, 568, 658
RseI CAYNNNNRTG 1 cut(s) 474
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 192
SatI GCNGC 1 cut(s) 576
Sau3AI GATC 3 cut(s) 18, 60, 631
Sau96I GGNCC 1 cut(s) 257
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 110
SfcI CTRYAG 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 148
SlaI CTCGAG 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SnaBI TACGTA 1 cut(s) 72
SsiI CCGC 2 cut(s) 64, 573
SspMI CTAG 1 cut(s) 748
SstI GAGCTC 1 cut(s) 110
TaaI ACNGT 4 cut(s) 10, 101, 134, 728
TaiI ACGT 1 cut(s) 74
TaqI TCGA 2 cut(s) 149, 723
TatI WGTACW 2 cut(s) 567, 657
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 3 cut(s) 132, 615, 673
TspGWI ACGGA 4 cut(s) 301, 323, 346, 368
XhoI CTCGAG 1 cut(s) 148
XspI CTAG 1 cut(s) 748
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.