RLG00000011894

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000576
Physical Location & Seq
Reverse (-)
13598401 .. 13599326
926 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011894

Sequence Viewer

Length: 540 bp
ATGCACCCAAAAAAATTCTATTTGTATCTTTTTGTTCTCTCAATTAAAAGCATAACAAGTGGAGATCGACTAAGATCGGTTCGGAAGGTTCGTTTCCGATCGGGTGATGATATTTGGCATGTTGATGACCTTGCTATTGTGGAAGACGATGATCTACAAGTTTGCTTGACCTCGAGATCTGCCATTTCTAATGGTGATATGAGGCTACCGGAGGTGAGACCGATTCTGTTTCCCTTGGACTCGGACCCTTTGTTGGTGGGGAGAATGACTTCTTTCTACTCATCGGAGGAAGCTGCTTTTGATGGTGATAACCCGGTGGCCGGGATGTTGGCTGCGAGCTCTGACATCTGTGTCTGCGCAGATTGTGACAAAGATCGATGGCAGGACGGGGATGATCTCGGGCCTATGGTGTTTTGCTCATCGCCTGAACAGTTTCGTCTGGAATCGGGCCCTACCAGTGAAGGTGGTAGAGCGGGAGACGTCCTCCTGCGAGTGGCTGAAAAGAAAAACGTTGTTGAGGATTGCATGTTATTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.87

Weight (kDa)

4.55

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 350
AatII GACGTC 1 cut(s) 483
Acc16I TGCGCA 1 cut(s) 358
AccBSI CCGCTC 1 cut(s) 473
AciI CCGC 1 cut(s) 473
AclI AACGTT 1 cut(s) 510
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 480
AfiI CCNNNNNNNGG 3 cut(s) 253, 320, 493
AluBI AGCT 2 cut(s) 293, 339
AluI AGCT 2 cut(s) 293, 339
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 2 cut(s) 211, 471
Ama87I CYCGRG 2 cut(s) 172, 398
AoxI GGCC 3 cut(s) 318, 401, 448
ApaI GGGCCC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 293, 332
ApoI RAATTY 1 cut(s) 14
Asp700I GAANNNNTTC 2 cut(s) 268, 432
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 4 cut(s) 244, 401, 448, 449
AsuC2I CCSGG 2 cut(s) 314, 322
AsuHPI GGTGA 4 cut(s) 116, 206, 226, 317
AvaI CYCGRG 2 cut(s) 172, 398
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 452
BanII GRGCYC 2 cut(s) 341, 452
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 280, 319
BccI CCATC 2 cut(s) 296, 372
BcnI CCSGG 2 cut(s) 314, 322
BcoDI GTCTC 2 cut(s) 211, 471
BglII AGATCT 1 cut(s) 176
BisI GCNGC 2 cut(s) 294, 333
BlsI GCNGC 2 cut(s) 295, 334
Bme1390I CCNGG 2 cut(s) 314, 322
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 2 cut(s) 172, 398
BmgT120I GGNCC 4 cut(s) 244, 401, 448, 449
BmiI GGNNCC 2 cut(s) 246, 450
BmrFI CCNGG 2 cut(s) 314, 322
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 468, 500
BpuMI CCSGG 2 cut(s) 314, 322
Bsa29I ATCGAT 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 320, 493
Bse1I ACTGG 1 cut(s) 456
BseCI ATCGAT 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 330, 397
BseLI CCNNNNNNNGG 3 cut(s) 253, 320, 493
BseNI ACTGG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 2 cut(s) 280, 319
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 3 cut(s) 320, 403, 450
BshVI ATCGAT 1 cut(s) 376
BsiEI CGRYCG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 341
BsiHKCI CYCGRG 2 cut(s) 172, 398
BsiSI CCGG 3 cut(s) 209, 314, 321
BslI CCNNNNNNNGG 3 cut(s) 253, 320, 493
BsmAI GTCTC 2 cut(s) 211, 471
BsmBI CGTCTC 1 cut(s) 471
BsnI GGCC 3 cut(s) 320, 403, 450
Bso31I GGTCTC 1 cut(s) 211
BsoBI CYCGRG 2 cut(s) 172, 398
Bsp120I GGGCCC 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 341, 452
Bsp143I GATC 7 cut(s) 64, 74, 98, 151, 176, 373, 394
BspACI CCGC 1 cut(s) 473
BspANI GGCC 3 cut(s) 320, 403, 450
BspDI ATCGAT 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 246, 450
BspTNI GGTCTC 1 cut(s) 211
BsrBI CCGCTC 1 cut(s) 473
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 7 cut(s) 64, 74, 98, 151, 176, 373, 394
BssNI GRCGYC 1 cut(s) 480
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 432
BstACI GRCGYC 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 330, 397
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 7 cut(s) 67, 77, 101, 154, 179, 376, 397
BstMAI GTCTC 2 cut(s) 211, 471
BstMBI GATC 7 cut(s) 64, 74, 98, 151, 176, 373, 394
BstMCI CGRYCG 1 cut(s) 101
BstNSI RCATGY 2 cut(s) 122, 529
BstSCI CCNGG 2 cut(s) 312, 320
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 280, 319
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
Bsu15I ATCGAT 1 cut(s) 376
BsuRI GGCC 3 cut(s) 320, 403, 450
BsuTUI ATCGAT 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 405
BtsCI GGATG 2 cut(s) 330, 397
BtsIMutI CAGTG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 337
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 4 cut(s) 244, 401, 448, 449
ClaI ATCGAT 1 cut(s) 376
CviAII CATG 2 cut(s) 119, 526
CviJI RGCY 8 cut(s) 205, 293, 320, 332, 339, 403, 450, 497
CviKI_1 RGCY 8 cut(s) 205, 293, 320, 332, 339, 403, 450, 497
DdeI CTNAG 1 cut(s) 71
DpnI GATC 7 cut(s) 66, 76, 100, 153, 178, 375, 396
DpnII GATC 7 cut(s) 64, 74, 98, 151, 176, 373, 394
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 2 cut(s) 341, 452
Eco31I GGTCTC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 172, 398
EcoICRI GAGCTC 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 2 cut(s) 341, 452
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 471
FaeI CATG 2 cut(s) 122, 529
FaiI YATR 5 cut(s) 53, 120, 200, 407, 527
FatI CATG 2 cut(s) 118, 525
FauI CCCGC 1 cut(s) 466
Fnu4HI GCNGC 2 cut(s) 294, 333
FokI GGATG 2 cut(s) 337, 404
FriOI GRGCYC 2 cut(s) 341, 452
Fsp4HI GCNGC 2 cut(s) 294, 333
FspI TGCGCA 1 cut(s) 358
GlaI GCGC 1 cut(s) 358
GluI GCNGC 2 cut(s) 294, 333
HaeIII GGCC 3 cut(s) 320, 403, 450
HapII CCGG 3 cut(s) 209, 314, 321
HhaI GCGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 2 cut(s) 122, 529
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HinfI GANTC 3 cut(s) 223, 239, 443
HpaII CCGG 3 cut(s) 209, 314, 321
HphI GGTGA 4 cut(s) 116, 206, 226, 317
Hpy188I TCNGA 5 cut(s) 84, 98, 244, 286, 343
Hpy188III TCNNGA 2 cut(s) 174, 440
HpyAV CCTTC 2 cut(s) 79, 455
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4IV ACGT 2 cut(s) 480, 510
HpyCH4V TGCA 2 cut(s) 4, 525
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 2 cut(s) 480, 510
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 2 cut(s) 122, 529
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 7 cut(s) 64, 74, 98, 151, 176, 373, 394
LpnPI CCDG 8 cut(s) 222, 327, 334, 368, 425, 438, 469, 500
Lsp1109I GCAGC 2 cut(s) 280, 319
MaeII ACGT 2 cut(s) 480, 510
MaeIII GTNAC 1 cut(s) 365
MalI GATC 7 cut(s) 66, 76, 100, 153, 178, 375, 396
MbiI CCGCTC 1 cut(s) 473
MboI GATC 7 cut(s) 64, 74, 98, 151, 176, 373, 394
MboII GAAGA 1 cut(s) 155
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 341, 452
MluCI AATT 2 cut(s) 14, 42
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 6 cut(s) 181, 195, 205, 280, 494, 511
MroXI GAANNNNTTC 2 cut(s) 268, 432
MseI TTAA 2 cut(s) 45, 538
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 3 cut(s) 209, 314, 321
MspR9I CCNGG 2 cut(s) 314, 322
NciI CCSGG 2 cut(s) 314, 322
NdeII GATC 7 cut(s) 64, 74, 98, 151, 176, 373, 394
NlaIII CATG 2 cut(s) 122, 529
NlaIV GGNNCC 2 cut(s) 246, 450
NmuCI GTSAC 1 cut(s) 365
NsbI TGCGCA 1 cut(s) 358
NspI RCATGY 2 cut(s) 122, 529
PaeR7I CTCGAG 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PdmI GAANNNNTTC 2 cut(s) 268, 432
PfeI GAWTC 2 cut(s) 223, 443
PkrI GCNGC 2 cut(s) 295, 334
Ple19I CGATCG 1 cut(s) 101
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 341
Psp1406I AACGTT 1 cut(s) 510
PspN4I GGNNCC 2 cut(s) 246, 450
PspOMI GGGCCC 1 cut(s) 448
PspPI GGNCC 4 cut(s) 244, 401, 448, 449
PsuI RGATCY 1 cut(s) 176
PvuI CGATCG 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 45, 538
SatI GCNGC 2 cut(s) 294, 333
Sau3AI GATC 7 cut(s) 64, 74, 98, 151, 176, 373, 394
Sau96I GGNCC 4 cut(s) 244, 401, 448, 449
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 314, 322
SduI GDGCHC 2 cut(s) 341, 452
SetI ASST 9 cut(s) 90, 132, 173, 216, 295, 341, 466, 483, 513
Sfr274I CTCGAG 1 cut(s) 172
SinI GGWCC 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 2 cut(s) 14, 42
SsiI CCGC 1 cut(s) 473
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 312, 320
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 432
TaiI ACGT 2 cut(s) 483, 513
TaqI TCGA 3 cut(s) 67, 173, 376
TaqII GACCGA 1 cut(s) 235
TasI AATT 2 cut(s) 14, 42
TfiI GAWTC 2 cut(s) 223, 443
Tru1I TTAA 2 cut(s) 45, 538
Tru9I TTAA 2 cut(s) 45, 538
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 2 cut(s) 293, 332
Tsp45I GTSAC 1 cut(s) 365
TspRI CASTG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 14
XceI RCATGY 2 cut(s) 122, 529
XhoI CTCGAG 1 cut(s) 172
XmnI GAANNNNTTC 2 cut(s) 268, 432
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.