RLG00000005430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000576
Physical Location & Seq
Forward (+)
67588305 .. 67588911
607 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005430

Sequence Viewer

Length: 309 bp
ATGGTGGTGATGGCAAATTTTGGTCTGCTTGTTATGTTCTTCCTTGCGTTGTGGGACGCTGAGGCGGCGTTGAGTTCAGGGGTTGCAGGCGCTGTTGTTTCTGCGCCCAAGCTCGACGGCGATCTTGCTTTCCTGGACGGTGACAGAGAGCGGGTTTGCTCGGACGTAGGGACTATTGCTTCTGCTGGTGGTGCTCATTGGATGCTTGGTGCAACGACGGGCCCTACCACGTCTTTGGTGGCTGTGGCTTGCTGGTTGGCGGCGAAGGTGTGCAGGTCCGGTGGGGGGGATCCTGTGGGGTGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.19

Weight (kDa)

4.47

Isoelectric Point (pI)

26.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AccBSI CCGCTC 1 cut(s) 151
AciI CCGC 3 cut(s) 65, 151, 260
AclWI GGATC 2 cut(s) 284, 297
AcsI RAATTY 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 285
AjiI CACGTC 1 cut(s) 231
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 2 cut(s) 196, 305
AlwI GGATC 2 cut(s) 284, 297
AlwNI CAGNNNCTG 1 cut(s) 92
AoxI GGCC 1 cut(s) 220
ApaI GGGCCC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 16
AspLEI GCGC 2 cut(s) 92, 106
AspS9I GGNCC 3 cut(s) 220, 221, 276
AsuHPI GGTGA 2 cut(s) 19, 152
AvaII GGWCC 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 224
BamHI GGATCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 224
Bbv12I GWGCWC 2 cut(s) 196, 305
BbvCI CCTCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 264
BisI GCNGC 2 cut(s) 66, 261
BlsI GCNGC 2 cut(s) 67, 262
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 276
BmgBI CACGTC 1 cut(s) 231
BmgT120I GGNCC 3 cut(s) 220, 221, 276
BmiI GGNNCC 2 cut(s) 222, 291
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 292
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 196, 305
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 2 cut(s) 68, 184
BslI CCNNNNNNNGG 1 cut(s) 285
BsmFI GGGAC 2 cut(s) 68, 184
BsnI GGCC 1 cut(s) 222
Bsp120I GGGCCC 1 cut(s) 220
Bsp1286I GDGCHC 3 cut(s) 196, 224, 305
Bsp143I GATC 2 cut(s) 121, 289
BspACI CCGC 3 cut(s) 65, 151, 260
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 222, 291
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 2 cut(s) 284, 297
BsrBI CCGCTC 1 cut(s) 151
BssMI GATC 2 cut(s) 121, 289
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 88, 250
BstDEI CTNAG 2 cut(s) 60, 306
BstF5I GGATG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 2 cut(s) 92, 106
BstKTI GATC 2 cut(s) 124, 292
BstMBI GATC 2 cut(s) 121, 289
BstMWI GCNNNNNNNGC 2 cut(s) 65, 191
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 222
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 88, 250
CaiI CAGNNNCTG 1 cut(s) 92
CfoI GCGC 2 cut(s) 92, 106
Cfr13I GGNCC 3 cut(s) 220, 221, 276
CseI GACGC 1 cut(s) 65
CviJI RGCY 4 cut(s) 112, 222, 242, 248
CviKI_1 RGCY 4 cut(s) 112, 222, 242, 248
DdeI CTNAG 2 cut(s) 60, 306
DpnI GATC 2 cut(s) 123, 291
DpnII GATC 2 cut(s) 121, 289
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 224
FaiI YATR 1 cut(s) 35
FaqI GGGAC 2 cut(s) 68, 184
FauI CCCGC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 66, 261
FokI GGATG 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 66, 261
GlaI GCGC 2 cut(s) 91, 105
GluI GCNGC 2 cut(s) 66, 261
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 279
HgaI GACGC 1 cut(s) 65
HhaI GCGC 2 cut(s) 92, 106
Hin6I GCGC 2 cut(s) 90, 104
HinP1I GCGC 2 cut(s) 90, 104
HpaII CCGG 1 cut(s) 279
HphI GGTGA 2 cut(s) 19, 152
Hpy188I TCNGA 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 119, 220
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 165, 230
HpyCH4V TGCA 3 cut(s) 86, 212, 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 191
HpyF3I CTNAG 2 cut(s) 60, 306
HpySE526I ACGT 2 cut(s) 165, 230
HspAI GCGC 2 cut(s) 90, 104
Kzo9I GATC 2 cut(s) 121, 289
LpnPI CCDG 8 cut(s) 63, 72, 119, 146, 171, 238, 259, 292
LweI GCATC 1 cut(s) 192
MaeII ACGT 2 cut(s) 165, 230
MaeIII GTNAC 1 cut(s) 140
MalI GATC 2 cut(s) 123, 291
MbiI CCGCTC 1 cut(s) 151
MboI GATC 2 cut(s) 121, 289
MboII GAAGA 1 cut(s) 31
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 3 cut(s) 196, 224, 305
MluCI AATT 1 cut(s) 16
MnlI CCTC 1 cut(s) 55
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 65, 191
NdeII GATC 2 cut(s) 121, 289
NlaIV GGNNCC 2 cut(s) 222, 291
NmuCI GTSAC 1 cut(s) 140
PfoI TCCNGGA 1 cut(s) 132
PkrI GCNGC 2 cut(s) 67, 262
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 222, 291
PspOMI GGGCCC 1 cut(s) 220
PspPI GGNCC 3 cut(s) 220, 221, 276
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 289
SatI GCNGC 2 cut(s) 66, 261
Sau3AI GATC 2 cut(s) 121, 289
Sau96I GGNCC 3 cut(s) 220, 221, 276
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 3 cut(s) 196, 224, 305
SetI ASST 5 cut(s) 114, 168, 233, 270, 278
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 1 cut(s) 276
Sse9I AATT 1 cut(s) 16
SsiI CCGC 3 cut(s) 65, 151, 260
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 2 cut(s) 168, 233
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 16
TauI GCSGC 2 cut(s) 68, 263
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.