Rh5AG470600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000576
Physical Location & Seq
Reverse (-)
80681904 .. 80683438
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG470600.1

Sequence Viewer

Length: 606 bp
ATGGCAGATCTCGGTCTGCTTATTCTCTTCCTCGTGGCGCTGGGTAGCGCTGAGACTATGTTGGTGTCGGAGATTGGGGGCGTTGTTGGATCCGCATCCAAGCTCGACGGTGAAGTCCAAGATGCGGCCTCGTTTGCGGGGATGGCATCTCGGTGGTGGGTGAGTGGTGATCCGGTCTTGGTTTGGTCAAGATCGGATCGGAAATGTCTATTCCGATCGGATCCAAGGGACGATGGTGCATCTAAGAATGGCATCTTGATTAACCGAATCTGGTTTGGTGTTCCTATTGATAGTGATGATGGATCTACTCTTGATCAGTCAATCTATGGCGGAGGCCAGGTTACTCTTGTTGGAGGTGGTGGTGATATGTGGTGGGGTTGCGTGCAACAGTGTGGCGAATTTGGGCGAGGTGATAGCTTCAGCTTCTTCTCCTCTTCCTTGAAATCTTCCGATGGTCGTAGCGGTGCAGATCTCGTGTTCGGGGCAGCTGGTTATCTTTGGTTATTGTGGAGAAAAGGCATCGGGTCTTCGATGGTGGAGGAGTGTCGTATGTTGAACATGAGGTTCAAATATTGTACTCAAAACATAAGGCTCCAAGAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.72

Weight (kDa)

4.76

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AciI CCGC 5 cut(s) 93, 125, 137, 330, 462
AclWI GGATC 7 cut(s) 84, 97, 164, 204, 215, 228, 310
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 403
AfaI GTAC 1 cut(s) 577
AfeI AGCGCT 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 3 cut(s) 442, 556, 568
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 4 cut(s) 103, 417, 423, 488
AluI AGCT 4 cut(s) 103, 417, 423, 488
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 7 cut(s) 84, 97, 164, 204, 215, 228, 310
Aor51HI AGCGCT 1 cut(s) 49
AoxI GGCC 2 cut(s) 126, 334
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 1 cut(s) 398
AspLEI GCGC 2 cut(s) 40, 50
AsuHPI GGTGA 5 cut(s) 122, 172, 179, 374, 422
BamHI GGATCC 2 cut(s) 89, 220
BauI CACGAG 2 cut(s) 32, 473
BbsI GAAGAC 1 cut(s) 519
BbvI GCAGC 1 cut(s) 497
BccI CCATC 5 cut(s) 136, 227, 293, 446, 526
BciT130I CCWGG 1 cut(s) 338
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 602
BfoI RGCGCY 2 cut(s) 41, 51
BglII AGATCT 2 cut(s) 7, 469
BisI GCNGC 2 cut(s) 126, 486
BlsI GCNGC 2 cut(s) 127, 487
Bme1390I CCNGG 1 cut(s) 338
BmiI GGNNCC 3 cut(s) 91, 222, 593
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 6 cut(s) 104, 112, 155, 248, 261, 528
BpiI GAAGAC 1 cut(s) 519
BsaBI GATNNNNATC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 94
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 2 cut(s) 95, 147
BseJI GATNNNNATC 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 2 cut(s) 421, 554
BseXI GCAGC 1 cut(s) 497
BseYI CCCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 486
Bsh1285I CGRYCG 1 cut(s) 218
BshFI GGCC 2 cut(s) 128, 336
BsiEI CGRYCG 1 cut(s) 218
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 2 cut(s) 128, 336
BspACI CCGC 5 cut(s) 93, 125, 137, 330, 462
BspANI GGCC 2 cut(s) 128, 336
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 3 cut(s) 91, 222, 593
BspPI GGATC 7 cut(s) 84, 97, 164, 204, 215, 228, 310
BssECI CCNNGG 1 cut(s) 224
BssSI CACGAG 2 cut(s) 32, 473
BssT1I CCWWGG 1 cut(s) 224
Bst2BI CACGAG 2 cut(s) 32, 473
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 110, 390
Bst6I CTCTTC 2 cut(s) 32, 439
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 2 cut(s) 51, 243
BstF5I GGATG 2 cut(s) 95, 147
BstH2I RGCGCY 2 cut(s) 41, 51
BstHHI GCGC 2 cut(s) 40, 50
BstMAI GTCTC 1 cut(s) 47
BstMCI CGRYCG 1 cut(s) 218
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 602
BstV1I GCAGC 1 cut(s) 497
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 5 cut(s) 7, 89, 220, 302, 469
BstYI RGATCY 5 cut(s) 7, 89, 220, 302, 469
BsuRI GGCC 2 cut(s) 128, 336
BtsCI GGATG 2 cut(s) 95, 147
BtsIMutI CAGTG 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 383
CfoI GCGC 2 cut(s) 40, 50
Csp6I GTAC 1 cut(s) 576
CviAII CATG 1 cut(s) 559
CviJI RGCY 7 cut(s) 103, 128, 336, 417, 423, 488, 592
CviKI_1 RGCY 7 cut(s) 103, 128, 336, 417, 423, 488, 592
CviQI GTAC 1 cut(s) 576
DdeI CTNAG 2 cut(s) 51, 243
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 32, 439
EarI CTCTTC 2 cut(s) 32, 439
EciI GGCGGA 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 224
Eco47III AGCGCT 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 1 cut(s) 562
FaiI YATR 7 cut(s) 59, 327, 368, 551, 560, 587, 604
FaqI GGGAC 1 cut(s) 242
FatI CATG 1 cut(s) 558
FauI CCCGC 1 cut(s) 130
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 126, 486
FokI GGATG 2 cut(s) 82, 154
Fsp4HI GCNGC 2 cut(s) 126, 486
GlaI GCGC 2 cut(s) 39, 49
GluI GCNGC 2 cut(s) 126, 486
GsaI CCCAGC 1 cut(s) 44
HaeII RGCGCY 2 cut(s) 41, 51
HaeIII GGCC 2 cut(s) 128, 336
HapII CCGG 1 cut(s) 173
HhaI GCGC 2 cut(s) 40, 50
Hin1II CATG 1 cut(s) 562
Hin6I GCGC 2 cut(s) 38, 48
HinP1I GCGC 2 cut(s) 38, 48
HinfI GANTC 1 cut(s) 267
HpaII CCGG 1 cut(s) 173
HphI GGTGA 5 cut(s) 122, 172, 179, 374, 422
Hpy188I TCNGA 6 cut(s) 70, 196, 201, 215, 220, 451
Hpy188III TCNNGA 3 cut(s) 189, 256, 311
Hpy99I CGWCG 1 cut(s) 110
HpyCH4III ACNGT 2 cut(s) 110, 390
HpyCH4V TGCA 3 cut(s) 239, 385, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
HpyF3I CTNAG 2 cut(s) 51, 243
Hsp92II CATG 1 cut(s) 562
HspAI GCGC 2 cut(s) 38, 48
Ksp22I TGATCA 1 cut(s) 313
LmnI GCTCC 1 cut(s) 597
LpnPI CCDG 6 cut(s) 26, 186, 256, 323, 350, 474
Lsp1109I GCAGC 1 cut(s) 497
LweI GCATC 6 cut(s) 104, 112, 155, 248, 261, 528
MaeIII GTNAC 1 cut(s) 340
MboII GAAGA 5 cut(s) 19, 418, 426, 438, 519
MflI RGATCY 5 cut(s) 7, 89, 220, 302, 469
MluCI AATT 1 cut(s) 398
MmeI TCCRAC 3 cut(s) 48, 67, 331
MnlI CCTC 8 cut(s) 41, 139, 326, 347, 401, 442, 532, 555
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 3 cut(s) 91, 222, 593
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 2 cut(s) 127, 487
Ple19I CGATCG 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 3 cut(s) 91, 222, 593
PsuI RGATCY 5 cut(s) 7, 89, 220, 302, 469
PvuI CGATCG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 577
RsaNI GTAC 1 cut(s) 576
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 2 cut(s) 126, 486
ScrFI CCNGG 1 cut(s) 338
SetI ASST 8 cut(s) 105, 342, 358, 412, 419, 425, 490, 566
SfaNI GCATC 6 cut(s) 104, 112, 155, 248, 261, 528
SfcI CTRYAG 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 1 cut(s) 398
SsiI CCGC 5 cut(s) 93, 125, 137, 330, 462
SspI AATATT 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 110, 390
TaqI TCGA 2 cut(s) 105, 530
TasI AATT 1 cut(s) 398
TatI WGTACW 1 cut(s) 575
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 395
TseI GCWGC 1 cut(s) 485
TspRI CASTG 1 cut(s) 395
XapI RAATTY 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.