RLG00000027568

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000576
Physical Location & Seq
Reverse (-)
12787951 .. 12788583
633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027568

Sequence Viewer

Length: 603 bp
ATGGTAGGTGTTGATCTGCTTATGCTTTTCTTGATCGCGTTGGGGAACACTGATGCGGTATTGCTTTCGGGAGTTACATGTGCTATTGTTTCTGCATCCAAACTTGATGGTGCAGTGAAAGATGCAGCCTCGTGGGAGGGGATGGCATCTAGATGCCAGTTGAGTAGCGATCCGGTCTTGGTTTGGTCTAGATCGGATCAGAAAGGCCGATTCCGATGGAGTCTATGGGACGATGGTGTACCTGTTCCAAGTGTTGATATGTGGCGTGCCTGCGATCTTGCTGTCCAGGATGGGACTATTGTTTCTGATGGTGGTGCTCATGGATCTAACGATTGCAAGTATGGAGCCAAGAGCGGCTGTCGAAACCAACCGGGGTTGCCGGAGATGAGGACGGATCTGCTTACCCCCAGCCCGGGCACTCTAGTGGCAGGGATAATGGTATGGCTCTGCTCTTCGAAGAAGATTACCTCTGATGGTGATGCTGCTTGGTGCAGCGATGGGCTTTACCACGTAGGTGGTAGTGGTGGCTTGTTGGTTGGCAGCGACGGTGTGCTGGTCCGGTGGGGTGGATCCTGTGGGGTGCCCTTAGTAATTTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

20.76

Weight (kDa)

4.84

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 580
AccBSI CCGCTC 1 cut(s) 354
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 56, 354
AclWI GGATC 6 cut(s) 164, 204, 331, 402, 564, 577
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 412, 413
AflIII ACRYGT 1 cut(s) 77
AjnI CCWGG 1 cut(s) 285
AleI CACNNNNGTG 2 cut(s) 422, 513
Alw21I GWGCWC 1 cut(s) 319
AlwI GGATC 6 cut(s) 164, 204, 331, 402, 564, 577
Ama87I CYCGRG 1 cut(s) 412
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 125, 482, 492, 540
AspS9I GGNCC 1 cut(s) 556
AsuC2I CCSGG 3 cut(s) 372, 413, 414
AsuHPI GGTGA 1 cut(s) 488
AsuII TTCGAA 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 2 cut(s) 419, 585
BamHI GGATCC 1 cut(s) 569
BanI GGYRCC 1 cut(s) 580
BauI CACGAG 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 4 cut(s) 137, 469, 504, 552
BccI CCATC 8 cut(s) 101, 136, 210, 227, 284, 302, 467, 491
BciT130I CCWGG 1 cut(s) 287
BcnI CCSGG 3 cut(s) 372, 413, 414
BfaI CTAG 3 cut(s) 150, 189, 422
BisI GCNGC 5 cut(s) 126, 355, 483, 493, 541
BlsI GCNGC 5 cut(s) 127, 356, 484, 494, 542
Bme1390I CCNGG 4 cut(s) 287, 372, 413, 414
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 3 cut(s) 346, 571, 582
BmrFI CCNGG 4 cut(s) 287, 372, 413, 414
BmsI GCATC 6 cut(s) 43, 104, 112, 143, 155, 469
Bpu14I TTCGAA 1 cut(s) 455
BpuMI CCSGG 3 cut(s) 372, 413, 414
BsaAI YACGTR 1 cut(s) 511
BsaJI CCNNGG 2 cut(s) 371, 412
BsaWI WCCGGW 2 cut(s) 172, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 413
Bse1I ACTGG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 371, 412
BseGI GGATG 3 cut(s) 95, 147, 295
BseLI CCNNNNNNNGG 2 cut(s) 412, 413
BseNI ACTGG 1 cut(s) 157
BseSI GKGCMC 2 cut(s) 419, 585
BseXI GCAGC 4 cut(s) 137, 469, 504, 552
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 2 cut(s) 132, 511
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 5 cut(s) 173, 371, 380, 413, 559
BslFI GGGAC 2 cut(s) 242, 307
BslI CCNNNNNNNGG 2 cut(s) 412, 413
BsmFI GGGAC 2 cut(s) 242, 307
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 319, 419, 585
Bsp143I GATC 9 cut(s) 13, 33, 169, 191, 196, 274, 323, 394, 569
BspACI CCGC 2 cut(s) 56, 354
BspANI GGCC 1 cut(s) 207
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 3 cut(s) 346, 571, 582
BspPI GGATC 6 cut(s) 164, 204, 331, 402, 564, 577
BspQI GCTCTTC 1 cut(s) 457
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 580
BsrBI CCGCTC 1 cut(s) 354
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 371, 412
BssMI GATC 9 cut(s) 13, 33, 169, 191, 196, 274, 323, 394, 569
BssSI CACGAG 1 cut(s) 130
Bst2BI CACGAG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 511
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 267, 271
BstDEI CTNAG 2 cut(s) 586, 600
BstF5I GGATG 3 cut(s) 95, 147, 295
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 9 cut(s) 16, 36, 172, 194, 199, 277, 326, 397, 572
BstMBI GATC 9 cut(s) 13, 33, 169, 191, 196, 274, 323, 394, 569
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 81
BstSCI CCNGG 4 cut(s) 285, 370, 411, 412
BstSLI GKGCMC 2 cut(s) 419, 585
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 4 cut(s) 137, 469, 504, 552
BstX2I RGATCY 3 cut(s) 323, 394, 569
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 3 cut(s) 323, 394, 569
BsuRI GGCC 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 3 cut(s) 95, 147, 295
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 48, 120
Cac8I GCNNGC 2 cut(s) 267, 271
Cfr13I GGNCC 1 cut(s) 556
Cfr9I CCCGGG 1 cut(s) 412
Csp6I GTAC 1 cut(s) 239
CviAII CATG 2 cut(s) 78, 320
CviJI RGCY 8 cut(s) 128, 207, 347, 357, 411, 445, 502, 528
CviKI_1 RGCY 8 cut(s) 128, 207, 347, 357, 411, 445, 502, 528
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 2 cut(s) 586, 600
DpnI GATC 9 cut(s) 15, 35, 171, 193, 198, 276, 325, 396, 571
DpnII GATC 9 cut(s) 13, 33, 169, 191, 196, 274, 323, 394, 569
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 556
Eco88I CYCGRG 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 81, 323
FaiI YATR 7 cut(s) 23, 79, 226, 260, 321, 342, 442
FaqI GGGAC 2 cut(s) 242, 307
FatI CATG 2 cut(s) 77, 319
Fnu4HI GCNGC 5 cut(s) 126, 355, 483, 493, 541
FokI GGATG 3 cut(s) 82, 154, 302
Fsp4HI GCNGC 5 cut(s) 126, 355, 483, 493, 541
FspBI CTAG 3 cut(s) 150, 189, 422
GluI GCNGC 5 cut(s) 126, 355, 483, 493, 541
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 207
HapII CCGG 5 cut(s) 173, 371, 380, 413, 559
Hin1II CATG 2 cut(s) 81, 323
HinfI GANTC 2 cut(s) 210, 220
HpaII CCGG 5 cut(s) 173, 371, 380, 413, 559
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 5 cut(s) 196, 201, 215, 307, 472
Hpy188III TCNNGA 4 cut(s) 31, 69, 150, 189
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 548
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 5 cut(s) 95, 113, 125, 336, 492
HpyF3I CTNAG 2 cut(s) 586, 600
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 2 cut(s) 81, 323
Kzo9I GATC 9 cut(s) 13, 33, 169, 191, 196, 274, 323, 394, 569
LguI GCTCTTC 1 cut(s) 457
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 4 cut(s) 137, 469, 504, 552
LweI GCATC 6 cut(s) 43, 104, 112, 143, 155, 469
MaeI CTAG 3 cut(s) 150, 189, 422
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 73
MalI GATC 9 cut(s) 15, 35, 171, 193, 198, 276, 325, 396, 571
MbiI CCGCTC 1 cut(s) 354
MboI GATC 9 cut(s) 13, 33, 169, 191, 196, 274, 323, 394, 569
MboII GAAGA 3 cut(s) 444, 469, 472
MflI RGATCY 3 cut(s) 323, 394, 569
MhlI GDGCHC 3 cut(s) 319, 419, 585
MluCI AATT 1 cut(s) 591
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 4 cut(s) 130, 139, 381, 478
MslI CAYNNNNRTG 3 cut(s) 151, 422, 513
MspI CCGG 5 cut(s) 173, 371, 380, 413, 559
MspR9I CCNGG 4 cut(s) 287, 372, 413, 414
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 38
NciI CCSGG 3 cut(s) 372, 413, 414
NdeII GATC 9 cut(s) 13, 33, 169, 191, 196, 274, 323, 394, 569
NlaIII CATG 2 cut(s) 81, 323
NlaIV GGNNCC 3 cut(s) 346, 571, 582
NspI RCATGY 1 cut(s) 81
NspV TTCGAA 1 cut(s) 455
OliI CACNNNNGTG 2 cut(s) 422, 513
PciI ACATGT 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 285
PkrI GCNGC 5 cut(s) 127, 356, 484, 494, 542
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 511
PscI ACATGT 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 3 cut(s) 346, 571, 582
PspPI GGNCC 1 cut(s) 556
PsuI RGATCY 3 cut(s) 323, 394, 569
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 3 cut(s) 151, 422, 513
SapI GCTCTTC 1 cut(s) 457
SatI GCNGC 5 cut(s) 126, 355, 483, 493, 541
Sau3AI GATC 9 cut(s) 13, 33, 169, 191, 196, 274, 323, 394, 569
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 4 cut(s) 287, 372, 413, 414
SduI GDGCHC 3 cut(s) 319, 419, 585
SetI ASST 5 cut(s) 10, 244, 470, 513, 517
SfaNI GCATC 6 cut(s) 43, 104, 112, 143, 155, 469
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 1 cut(s) 556
SmaI CCCGGG 1 cut(s) 414
SmiMI CAYNNNNRTG 3 cut(s) 151, 422, 513
SrfI GCCCGGGC 1 cut(s) 414
Sse9I AATT 1 cut(s) 591
SsiI CCGC 2 cut(s) 56, 354
SspMI CTAG 3 cut(s) 150, 189, 422
StyD4I CCNGG 4 cut(s) 285, 370, 411, 412
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 1 cut(s) 513
TaqI TCGA 2 cut(s) 361, 455
TasI AATT 1 cut(s) 591
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 210
TscAI CASTG 2 cut(s) 55, 120
TseI GCWGC 4 cut(s) 125, 482, 492, 540
TspGWI ACGGA 1 cut(s) 407
TspMI CCCGGG 1 cut(s) 412
TspRI CASTG 2 cut(s) 55, 120
VpaK11BI GGWCC 1 cut(s) 556
XbaI TCTAGA 2 cut(s) 149, 188
XceI RCATGY 1 cut(s) 81
XmaI CCCGGG 1 cut(s) 412
XspI CTAG 3 cut(s) 150, 189, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.