RLG00000017726

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000576
Physical Location & Seq
Reverse (-)
20459664 .. 20461227
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017726

Sequence Viewer

Length: 699 bp
ATGGCAGATTTTGGTGTGCTTATTCTCTTCCTCGTTGAGCTGGGTATCGCTGAGGCTATGTTGGTGTCGGGGGTTGGGGGCGCTGTTGGATCCGCGTCCAAGCTCGACGGTGAAGTGCAAGTTGCGGCCTCATTTGCGGGGATGGCATCTAGGTGGTGGATGAGTGGTGATCCGGTCTTGGACGGTGTGCTGCTTTGCTCGGACTCAGGGACTGTTGCTTTGGATGGCGGTGCTCTTAGGTATAGTGGCTGCAAGTGTGGTGGCAAGGGCGGCTGTCAAATTTTGTCAACTACCGGAGGTATGGACGGCCCTGCTTTCCTCTGGCCTGGATCCTTCTTTGGCGTGGATGACAGGTTGGTTCTACTCGACGGTGGTTGGTACAGCGGTAGGATGTACGACATCGATGGTGGCTACGGCGGCTTGCAAATCGGAGACGATGATCTGCAACATTTCGGGTTGCAAATGGTCTTGCACCTCACAGAGAACATCTCTTGTTGGAGAGAGTTCATGAAGAAGAATGACTGGCGGGCGGCTGTGAGTTGGAAAATCCAACCAGCGAGGGGCCGCCTCAAGGCCCTGTGTGGATGTGGTGCTCTTGATGACTCACTGGCTATTCCGACCGTCGCTAGGTGGAGATTGAGGCTTGGGTCCGCAAAGGACGACCTTCTCTGGATGGTTTGTGATGCAGGAATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

24.57

Weight (kDa)

4.76

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AclWI GGATC 5 cut(s) 84, 97, 164, 324, 337
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 2 cut(s) 380, 395
AfiI CCNNNNNNNGG 3 cut(s) 560, 571, 627
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 2 cut(s) 40, 103
AluI AGCT 2 cut(s) 40, 103
Alw21I GWGCWC 2 cut(s) 235, 595
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 5 cut(s) 84, 97, 164, 324, 337
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 5 cut(s) 126, 307, 323, 562, 573
ApeKI GCWGC 2 cut(s) 190, 249
ApoI RAATTY 1 cut(s) 279
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 4 cut(s) 308, 562, 574, 648
AsuHPI GGTGA 2 cut(s) 122, 179
AvaII GGWCC 1 cut(s) 648
BaeI ACNNNNGTAYC 2 cut(s) 370, 403
BamHI GGATCC 2 cut(s) 89, 329
Bbv12I GWGCWC 2 cut(s) 235, 595
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 177, 236
BccI CCATC 4 cut(s) 136, 218, 398, 667
BceAI ACGGC 2 cut(s) 322, 430
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 2 cut(s) 150, 627
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 7 cut(s) 126, 191, 250, 271, 418, 531, 565
BlsI GCNGC 7 cut(s) 127, 192, 251, 272, 419, 532, 566
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 648
BmgT120I GGNCC 4 cut(s) 308, 562, 574, 648
BmiI GGNNCC 4 cut(s) 91, 331, 563, 649
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 155, 673
BplI GAGNNNNNCTC 2 cut(s) 473, 505
Bpu10I CCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 554
Bsa29I ATCGAT 1 cut(s) 402
BsaWI WCCGGW 2 cut(s) 172, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 560, 571, 627
Bse1I ACTGG 2 cut(s) 527, 612
BseBI CCWGG 1 cut(s) 327
BseCI ATCGAT 1 cut(s) 402
BseGI GGATG 7 cut(s) 147, 165, 229, 352, 396, 590, 678
BseLI CCNNNNNNNGG 3 cut(s) 560, 571, 627
BseMII CTCAG 2 cut(s) 42, 219
BseNI ACTGG 2 cut(s) 527, 612
BseXI GCAGC 2 cut(s) 177, 236
BseYI CCCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 621
BshFI GGCC 5 cut(s) 128, 309, 325, 564, 575
BshVI ATCGAT 1 cut(s) 402
BsiEI CGRYCG 1 cut(s) 621
BsiHKAI GWGCWC 2 cut(s) 235, 595
BsiSI CCGG 2 cut(s) 173, 294
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 3 cut(s) 560, 571, 627
BsmAI GTCTC 1 cut(s) 426
BsmBI CGTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 5 cut(s) 128, 309, 325, 564, 575
Bsp1286I GDGCHC 2 cut(s) 235, 595
Bsp143I GATC 4 cut(s) 89, 169, 329, 439
BspANI GGCC 5 cut(s) 128, 309, 325, 564, 575
BspCNI CTCAG 2 cut(s) 43, 218
BspDI ATCGAT 1 cut(s) 402
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 4 cut(s) 91, 331, 563, 649
BspPI GGATC 5 cut(s) 84, 97, 164, 324, 337
BsrI ACTGG 2 cut(s) 527, 612
BssMI GATC 4 cut(s) 89, 169, 329, 439
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 5 cut(s) 110, 185, 214, 371, 622
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 422, 528
BstDEI CTNAG 4 cut(s) 51, 205, 236, 696
BstF5I GGATG 7 cut(s) 147, 165, 229, 352, 396, 590, 678
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 4 cut(s) 92, 172, 332, 442
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 4 cut(s) 89, 169, 329, 439
BstMCI CGRYCG 1 cut(s) 621
BstMWI GCNNNNNNNGC 5 cut(s) 134, 143, 270, 417, 692
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 177, 236
BstX2I RGATCY 2 cut(s) 89, 329
BstYI RGATCY 2 cut(s) 89, 329
Bsu15I ATCGAT 1 cut(s) 402
BsuRI GGCC 5 cut(s) 128, 309, 325, 564, 575
BsuTUI ATCGAT 1 cut(s) 402
BtsCI GGATG 7 cut(s) 147, 165, 229, 352, 396, 590, 678
BtsIMutI CAGTG 1 cut(s) 605
Cac8I GCNNGC 2 cut(s) 422, 528
CaiI CAGNNNCTG 1 cut(s) 212
CciI TCATGA 1 cut(s) 507
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 4 cut(s) 308, 562, 574, 648
ClaI ATCGAT 1 cut(s) 402
CseI GACGC 1 cut(s) 84
Csp6I GTAC 2 cut(s) 379, 394
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 1 cut(s) 508
CviQI GTAC 2 cut(s) 379, 394
DdeI CTNAG 4 cut(s) 51, 205, 236, 696
DpnI GATC 4 cut(s) 91, 171, 331, 441
DpnII GATC 4 cut(s) 89, 169, 329, 439
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 648
EcoO109I RGGNCCY 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 426
FaeI CATG 1 cut(s) 511
FaiI YATR 4 cut(s) 59, 243, 302, 509
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 507
FauI CCCGC 2 cut(s) 130, 519
Fnu4HI GCNGC 7 cut(s) 126, 191, 250, 271, 418, 531, 565
FokI GGATG 7 cut(s) 154, 172, 236, 359, 403, 597, 685
Fsp4HI GCNGC 7 cut(s) 126, 191, 250, 271, 418, 531, 565
FspBI CTAG 2 cut(s) 150, 627
GlaI GCGC 1 cut(s) 82
GluI GCNGC 7 cut(s) 126, 191, 250, 271, 418, 531, 565
GsaI CCCAGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 5 cut(s) 128, 309, 325, 564, 575
HapII CCGG 2 cut(s) 173, 294
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 511
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 2 cut(s) 203, 602
HpaII CCGG 2 cut(s) 173, 294
HphI GGTGA 2 cut(s) 122, 179
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 3 cut(s) 202, 431, 618
Hpy188III TCNNGA 3 cut(s) 508, 596, 670
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 3 cut(s) 110, 371, 626
HpyAV CCTTC 2 cut(s) 343, 674
HpyCH4III ACNGT 5 cut(s) 110, 185, 214, 371, 622
HpyCH4V TGCA 7 cut(s) 118, 252, 424, 445, 460, 472, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 143, 270, 417, 692
HpyF3I CTNAG 4 cut(s) 51, 205, 236, 696
Hsp92II CATG 1 cut(s) 511
HspAI GCGC 1 cut(s) 81
Kzo9I GATC 4 cut(s) 89, 169, 329, 439
Lsp1109I GCAGC 2 cut(s) 177, 236
LweI GCATC 2 cut(s) 155, 673
MaeI CTAG 2 cut(s) 150, 627
MalI GATC 4 cut(s) 91, 171, 331, 441
MboI GATC 4 cut(s) 89, 169, 329, 439
MboII GAAGA 3 cut(s) 19, 523, 526
MflI RGATCY 2 cut(s) 89, 329
MhlI GDGCHC 2 cut(s) 235, 595
MluCI AATT 1 cut(s) 279
MlyI GAGTC 2 cut(s) 197, 596
MmeI TCCRAC 5 cut(s) 67, 476, 521, 574, 641
MnlI CCTC 9 cut(s) 41, 46, 139, 290, 329, 485, 552, 578, 633
MslI CAYNNNNRTG 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 384
MspI CCGG 2 cut(s) 173, 294
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 5 cut(s) 134, 143, 270, 417, 692
NdeII GATC 4 cut(s) 89, 169, 329, 439
NlaIII CATG 1 cut(s) 511
NlaIV GGNNCC 4 cut(s) 91, 331, 563, 649
PagI TCATGA 1 cut(s) 507
PkrI GCNGC 7 cut(s) 127, 192, 251, 272, 419, 532, 566
PleI GAGTC 2 cut(s) 197, 596
PpsI GAGTC 2 cut(s) 197, 596
Psp6I CCWGG 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 4 cut(s) 91, 331, 563, 649
PspPI GGNCC 4 cut(s) 308, 562, 574, 648
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 2 cut(s) 89, 329
RsaI GTAC 2 cut(s) 380, 395
RsaNI GTAC 2 cut(s) 379, 394
RseI CAYNNNNRTG 1 cut(s) 151
SatI GCNGC 7 cut(s) 126, 191, 250, 271, 418, 531, 565
Sau3AI GATC 4 cut(s) 89, 169, 329, 439
Sau96I GGNCC 4 cut(s) 308, 562, 574, 648
SchI GAGTC 2 cut(s) 197, 596
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 235, 595
SetI ASST 9 cut(s) 42, 105, 155, 242, 301, 356, 477, 632, 666
SfaNI GCATC 2 cut(s) 155, 673
SinI GGWCC 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 1 cut(s) 279
SspMI CTAG 2 cut(s) 150, 627
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 5 cut(s) 110, 185, 214, 371, 622
TaqI TCGA 3 cut(s) 105, 366, 402
TasI AATT 1 cut(s) 279
TauI GCSGC 5 cut(s) 128, 273, 420, 533, 567
TscAI CASTG 1 cut(s) 612
TseI GCWGC 2 cut(s) 190, 249
TspDTI ATGAA 2 cut(s) 496, 524
TspRI CASTG 1 cut(s) 612
VpaK11BI GGWCC 1 cut(s) 648
XapI RAATTY 1 cut(s) 279
XspI CTAG 2 cut(s) 150, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.