Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000576

Physical Location & Seq

Genomic Coordinates Reverse (-)

48501822 .. 48502253

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG268800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTGGTTATGGCAGACTTGGGTCTGCTTATTCTCTTCTTCATTGTGCTGGGTAGCGCTGAGGCTGTGTTGATTTCATGGGATGGGGGCGCTGTTTTTTCTGCGTCCAAACTCGATGGTGAAGTGAAAGATGTAGCCTCGTTTGCGGGGATGGCATCTAGGTGGCGGATGAGCAGCGATCCGATCTTGGGTTGGGCTAGATCGGTTCGGAAGGTTCGTTTCCGATCGGGTGATGATTTTTGGCATGTCGATGACCTTGCTGTTGTGGAAGACGATGATCTACTGGTTTGCTTGACCTCGGGATCTGCCATCTCTAATGGCGATACGAGGCTGCGGGAGGTGAGACCGACTCTGTTTCCCTCGGGCTCTGACCCTTTGTTGGTGGGGAGGATGACTTCTTTCTACTCATCGGAGGAAGCTGCATGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.53

Weight (kDa)

4.56

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496101
rosa_laevigata	RLG00000001000 RLG00000003686 RLG00000004631 RLG00000004905 RLG00000005430 RLG00000005713 RLG00000007389 RLG00000011894 RLG00000014857 RLG00000017726 RLG00000020028 RLG00000020869 RLG00000021046 RLG00000023109 RLG00000026629 RLG00000027568 RLG00000027741 RLG00000027989 RLG00000029466 RLG00000032523 RLG00000034953 RLG00000035012 RLG00000036930
rosa_multiflora	Rmu_sc0001298.1_g000014 Rmu_sc0010937.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236180 Rroxscaffold_4G00282370 Rroxscaffold_4G00287700 Rroxscaffold_5G00344480 Rroxscaffold_6G00420630
rosa_rugosa	Rorug04G0441100 Rorug07G0282000
rosa_samantha	Rh1AG357100 Rh1BG076300 Rh1BG240500 Rh1BG369300 Rh1CG024800 Rh1CG092500 Rh1DG099000 Rh1DG268800 Rh2AG264600 Rh2AG530800 Rh2AG530900 Rh2BG059300 Rh2BG494200 Rh2BG521900 Rh2BG545400 Rh2CG061100 Rh2CG515200 Rh2DG271900 Rh2DG503300 Rh2DG531800 Rh3AG105800 Rh3AG326600 Rh3BG110000 Rh3CG111500 Rh3DG111600 Rh4AG180600 Rh4CG191700 Rh4DG037400 Rh5AG112900 Rh5AG149800 Rh5AG470600 Rh5BG490300 Rh5BG551700 Rh5CG160600 Rh5CG514300 Rh5CG574500 Rh5DG108700 Rh5DG114200 Rh5DG148200 Rh5DG298500 Rh5DG416900 Rh6CG280200 Rh6CG397900 Rh6DG215700 Rh6DG231300 Rh6DG272800 Rh7CG104800 Rh7CG247000 Rh7DG211100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	146, 166, 334
AclWI	GGATC	2 cut(s)	173, 310
AfeI	AGCGCT	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	188, 379
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	2 cut(s)	173, 310
Ama87I	CYCGRG	2 cut(s)	298, 361
Aor51HI	AGCGCT	1 cut(s)	58
ApeKI	GCWGC	3 cut(s)	174, 331, 419
AspLEI	GCGC	2 cut(s)	59, 92
AsuHPI	GGTGA	3 cut(s)	131, 242, 352
AvaI	CYCGRG	2 cut(s)	298, 361
BanII	GRGCYC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	186, 318, 406
BccI	CCATC	4 cut(s)	77, 110, 145, 317
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	2 cut(s)	159, 198
BfoI	RGCGCY	2 cut(s)	60, 93
BisI	GCNGC	3 cut(s)	175, 332, 420
BlsI	GCNGC	3 cut(s)	176, 333, 421
BmeT110I	CYCGRG	2 cut(s)	298, 361
BmsI	GCATC	1 cut(s)	164
BoxI	GACNNNNGTC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	334, 366
Bpu10I	CCTNAGC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	297, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 379
Bse1I	ACTGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	297, 360
BseGI	GGATG	4 cut(s)	88, 156, 174, 396
BseLI	CCNNNNNNNGG	2 cut(s)	188, 379
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	186, 318, 406
BseYI	CCCAGC	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	227
BsiHKCI	CYCGRG	2 cut(s)	298, 361
BslI	CCNNNNNNNGG	2 cut(s)	188, 379
BsmAI	GTCTC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	337
BsoBI	CYCGRG	2 cut(s)	298, 361
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	6 cut(s)	178, 183, 200, 224, 277, 302
BspACI	CCGC	3 cut(s)	146, 166, 334
BspCNI	CTCAG	1 cut(s)	52
BspPI	GGATC	2 cut(s)	173, 310
BspTNI	GGTCTC	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	297, 360
BssMI	GATC	6 cut(s)	178, 183, 200, 224, 277, 302
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	4 cut(s)	88, 156, 174, 396
BstH2I	RGCGCY	2 cut(s)	60, 93
BstHHI	GCGC	2 cut(s)	59, 92
BstKTI	GATC	6 cut(s)	181, 186, 203, 227, 280, 305
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	6 cut(s)	178, 183, 200, 224, 277, 302
BstMCI	CGRYCG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 152
BstNSI	RCATGY	2 cut(s)	248, 426
BstPAI	GACNNNNGTC	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	186, 318, 406
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BtsCI	GGATG	4 cut(s)	88, 156, 174, 396
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	2 cut(s)	59, 92
CseI	GACGC	1 cut(s)	93
CviAII	CATG	3 cut(s)	78, 245, 423
CviJI	RGCY	6 cut(s)	65, 137, 197, 331, 366, 419
CviKI_1	RGCY	6 cut(s)	65, 137, 197, 331, 366, 419
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	6 cut(s)	180, 185, 202, 226, 279, 304
DpnII	GATC	6 cut(s)	178, 183, 200, 224, 277, 302
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	337
Eco47III	AGCGCT	1 cut(s)	58
Eco88I	CYCGRG	2 cut(s)	298, 361
EcoT38I	GRGCYC	1 cut(s)	368
FaeI	CATG	3 cut(s)	81, 248, 426
FaiI	YATR	4 cut(s)	11, 79, 246, 424
FatI	CATG	3 cut(s)	77, 244, 422
FauI	CCCGC	2 cut(s)	139, 327
Fnu4HI	GCNGC	3 cut(s)	175, 332, 420
FokI	GGATG	4 cut(s)	95, 163, 181, 403
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	3 cut(s)	175, 332, 420
FspBI	CTAG	2 cut(s)	159, 198
GlaI	GCGC	2 cut(s)	58, 91
GluI	GCNGC	3 cut(s)	175, 332, 420
GsaI	CCCAGC	1 cut(s)	53
HaeII	RGCGCY	2 cut(s)	60, 93
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	2 cut(s)	59, 92
Hin1II	CATG	3 cut(s)	81, 248, 426
Hin6I	GCGC	2 cut(s)	57, 90
HinP1I	GCGC	2 cut(s)	57, 90
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	3 cut(s)	131, 242, 352
Hpy188I	TCNGA	5 cut(s)	183, 210, 224, 370, 412
Hpy188III	TCNNGA	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 152
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	81, 248, 426
HspAI	GCGC	2 cut(s)	57, 90
Kzo9I	GATC	6 cut(s)	178, 183, 200, 224, 277, 302
LpnPI	CCDG	2 cut(s)	35, 269
Lsp1109I	GCAGC	3 cut(s)	186, 318, 406
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	2 cut(s)	159, 198
MalI	GATC	6 cut(s)	180, 185, 202, 226, 279, 304
MboI	GATC	6 cut(s)	178, 183, 200, 224, 277, 302
MboII	GAAGA	3 cut(s)	28, 31, 281
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	8 cut(s)	55, 148, 307, 321, 331, 370, 381, 406
MslI	CAYNNNNRTG	2 cut(s)	160, 249
MwoI	GCNNNNNNNGC	2 cut(s)	143, 152
NdeII	GATC	6 cut(s)	178, 183, 200, 224, 277, 302
NlaIII	CATG	3 cut(s)	81, 248, 426
NspI	RCATGY	2 cut(s)	248, 426
PaeI	GCATGC	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PkrI	GCNGC	3 cut(s)	176, 333, 421
Ple19I	CGATCG	1 cut(s)	227
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PshAI	GACNNNNGTC	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	302
PvuI	CGATCG	1 cut(s)	227
RseI	CAYNNNNRTG	2 cut(s)	160, 249
SatI	GCNGC	3 cut(s)	175, 332, 420
Sau3AI	GATC	6 cut(s)	178, 183, 200, 224, 277, 302
SchI	GAGTC	1 cut(s)	343
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	6 cut(s)	164, 216, 258, 299, 342, 421
SfaNI	GCATC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	160, 249
SphI	GCATGC	1 cut(s)	426
SsiI	CCGC	3 cut(s)	146, 166, 334
SspMI	CTAG	2 cut(s)	159, 198
TaqI	TCGA	2 cut(s)	114, 249
TaqII	GACCGA	1 cut(s)	361
TseI	GCWGC	3 cut(s)	174, 331, 419
TspDTI	ATGAA	2 cut(s)	31, 66
XceI	RCATGY	2 cut(s)	248, 426
XspI	CTAG	2 cut(s)	159, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.