Rh5AG149800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000576
Physical Location & Seq
Forward (+)
15706601 .. 15707143
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG149800.1

Sequence Viewer

Length: 543 bp
ATGTTGGGGGTTGGGGGCGCTGTTGGATCTGCATCCAAGCTCGACGATGAAGTGCAAGATGCCACCTCGTTTACAGGGATGGCATCTAGGCGGGGCTTGGGTTGGTCAAGATCGGATCGGAAGGGTCGATTCCGATCGGGTCCAAGAGACGATGGTGCATCTACTACAGGTGTTGATATTTGGTGTGCCGCCATCGTGGAAGGTCTGCTTCTTTGGTCGGACTCGGAGACTGCTGCTTTGGATGGCGGTGCTATTAGGTATAATGGCTGCAAGTGTGATGGCAAGGGAGGCTGTCAAATTCTGTCGACTACCGGAGGTAAGGATGGCCCTGCTTTCCTCGGGCCTGGACCCTTTGTTGGCGGGGATGATAGCTTGGTTCTACTCGACGGTGGTTGGATGTACGACATCAGTGGAAGCGGCGGCGACTTGCAAATCAGAGACGATGGTGGGCTGGAACAGAGGGGTGGAGTCTATGGGGTGTCCTTAGTAATCTATGCTTGGGCCCTCTGGGCTTCATTCTGGTCTGTGAGCATTATTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

18.61

Weight (kDa)

4.47

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 305
AciI CCGC 6 cut(s) 91, 189, 246, 360, 417, 420
AclWI GGATC 2 cut(s) 34, 123
AcsI RAATTY 1 cut(s) 297
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 356
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 2 cut(s) 40, 372
AluI AGCT 2 cut(s) 40, 372
Alw26I GTCTC 3 cut(s) 141, 221, 432
AlwI GGATC 2 cut(s) 34, 123
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 3 cut(s) 325, 341, 501
ApaI GGGCCC 1 cut(s) 505
ApeKI GCWGC 2 cut(s) 233, 267
ApoI RAATTY 1 cut(s) 297
ArsI GACNNNNNNTTYG 2 cut(s) 220, 252
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 6 cut(s) 140, 326, 341, 347, 501, 502
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 2 cut(s) 140, 347
BaeGI GKGCMC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 505
BbvI GCAGC 2 cut(s) 220, 254
BccI CCATC 7 cut(s) 73, 146, 200, 236, 272, 317, 437
BciT130I CCWGG 1 cut(s) 345
BcoDI GTCTC 3 cut(s) 141, 221, 432
BfaI CTAG 2 cut(s) 87, 541
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 21
BglI GCCNNNNNGGC 1 cut(s) 509
BisI GCNGC 5 cut(s) 189, 234, 268, 418, 421
BlsI GCNGC 5 cut(s) 190, 235, 269, 419, 422
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 2 cut(s) 140, 347
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 6 cut(s) 140, 326, 341, 347, 501, 502
BmiI GGNNCC 3 cut(s) 141, 349, 503
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 4 cut(s) 41, 49, 92, 167
BsaBI GATNNNNATC 2 cut(s) 31, 133
BsaJI CCNNGG 1 cut(s) 337
BsaWI WCCGGW 1 cut(s) 311
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse8I GATNNNNATC 2 cut(s) 31, 133
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 6 cut(s) 32, 84, 247, 328, 370, 402
BseJI GATNNNNATC 2 cut(s) 31, 133
BseLI CCNNNNNNNGG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 2 cut(s) 220, 254
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 3 cut(s) 327, 343, 503
BsiEI CGRYCG 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 3 cut(s) 141, 221, 432
BsmBI CGTCTC 2 cut(s) 141, 432
BsnI GGCC 3 cut(s) 327, 343, 503
BsoBI CYCGRG 1 cut(s) 338
Bsp120I GGGCCC 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 4 cut(s) 26, 110, 115, 134
BspACI CCGC 6 cut(s) 91, 189, 246, 360, 417, 420
BspANI GGCC 3 cut(s) 327, 343, 503
BspLI GGNNCC 3 cut(s) 141, 349, 503
BspPI GGATC 2 cut(s) 34, 123
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 4 cut(s) 26, 110, 115, 134
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 389
BstAPI GCANNNNNTGC 1 cut(s) 537
BstDEI CTNAG 1 cut(s) 484
BstF5I GGATG 6 cut(s) 32, 84, 247, 328, 370, 402
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 4 cut(s) 29, 113, 118, 137
BstMAI GTCTC 3 cut(s) 141, 221, 432
BstMBI GATC 4 cut(s) 26, 110, 115, 134
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 3 cut(s) 288, 509, 537
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 2 cut(s) 220, 254
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 3 cut(s) 327, 343, 503
BtsCI GGATG 6 cut(s) 32, 84, 247, 328, 370, 402
BtsIMutI CAGTG 1 cut(s) 415
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 6 cut(s) 140, 326, 341, 347, 501, 502
Csp6I GTAC 1 cut(s) 400
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 1 cut(s) 484
DpnI GATC 4 cut(s) 28, 112, 117, 136
DpnII GATC 4 cut(s) 26, 110, 115, 134
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 140, 347
Eco88I CYCGRG 1 cut(s) 338
EcoO109I RGGNCCY 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 505
Esp3I CGTCTC 2 cut(s) 141, 432
FaiI YATR 3 cut(s) 261, 474, 495
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FauI CCCGC 2 cut(s) 84, 353
FblI GTMKAC 1 cut(s) 305
Fnu4HI GCNGC 5 cut(s) 189, 234, 268, 418, 421
FokI GGATG 6 cut(s) 19, 91, 254, 335, 377, 409
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 5 cut(s) 189, 234, 268, 418, 421
FspBI CTAG 2 cut(s) 87, 541
GlaI GCGC 1 cut(s) 19
GluI GCNGC 5 cut(s) 189, 234, 268, 418, 421
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 3 cut(s) 327, 343, 503
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 20
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 3 cut(s) 129, 221, 468
HpaII CCGG 1 cut(s) 312
Hpy166II GTNNAC 2 cut(s) 72, 306
Hpy188I TCNGA 6 cut(s) 115, 120, 134, 220, 226, 437
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 2 cut(s) 72, 306
Hpy99I CGWCG 2 cut(s) 47, 389
HpyAV CCTTC 2 cut(s) 115, 194
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 5 cut(s) 32, 55, 158, 270, 430
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 509, 537
HpyF3I CTNAG 1 cut(s) 484
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 4 cut(s) 26, 110, 115, 134
LpnPI CCDG 9 cut(s) 60, 153, 325, 330, 342, 357, 437, 493, 505
Lsp1109I GCAGC 2 cut(s) 220, 254
LweI GCATC 4 cut(s) 41, 49, 92, 167
MaeI CTAG 2 cut(s) 87, 541
MalI GATC 4 cut(s) 28, 112, 117, 136
MboI GATC 4 cut(s) 26, 110, 115, 134
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 1 cut(s) 297
MlyI GAGTC 2 cut(s) 215, 477
MmeI TCCRAC 3 cut(s) 4, 198, 374
MnlI CCTC 6 cut(s) 76, 281, 308, 347, 453, 515
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 3 cut(s) 288, 509, 537
NdeII GATC 4 cut(s) 26, 110, 115, 134
NlaIV GGNNCC 3 cut(s) 141, 349, 503
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 5 cut(s) 190, 235, 269, 419, 422
Ple19I CGATCG 1 cut(s) 137
PleI GAGTC 2 cut(s) 215, 476
PpsI GAGTC 2 cut(s) 215, 476
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 3 cut(s) 141, 349, 503
PspOMI GGGCCC 1 cut(s) 501
PspPI GGNCC 6 cut(s) 140, 326, 341, 347, 501, 502
PsuI RGATCY 1 cut(s) 26
PvuI CGATCG 1 cut(s) 137
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SalI GTCGAC 1 cut(s) 304
SatI GCNGC 5 cut(s) 189, 234, 268, 418, 421
Sau3AI GATC 4 cut(s) 26, 110, 115, 134
Sau96I GGNCC 6 cut(s) 140, 326, 341, 347, 501, 502
SchI GAGTC 2 cut(s) 215, 477
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 1 cut(s) 505
SetI ASST 7 cut(s) 42, 68, 172, 205, 260, 319, 374
SfaNI GCATC 4 cut(s) 41, 49, 92, 167
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 2 cut(s) 140, 347
Sse9I AATT 1 cut(s) 297
SsiI CCGC 6 cut(s) 91, 189, 246, 360, 417, 420
SspMI CTAG 2 cut(s) 87, 541
StyD4I CCNGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 4 cut(s) 42, 127, 305, 384
TasI AATT 1 cut(s) 297
TauI GCSGC 3 cut(s) 191, 420, 423
TfiI GAWTC 1 cut(s) 129
TscAI CASTG 1 cut(s) 415
TseI GCWGC 2 cut(s) 233, 267
TspDTI ATGAA 2 cut(s) 63, 504
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 2 cut(s) 140, 347
XapI RAATTY 1 cut(s) 297
XmiI GTMKAC 1 cut(s) 305
XspI CTAG 2 cut(s) 87, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.