Rh6DG272800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000576
Physical Location & Seq
Forward (+)
46726154 .. 46726453
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG272800.1

Sequence Viewer

Length: 300 bp
ATGGCAGATTTTGGTCTGCTTATTCTTTTCTTGATTGCTTTGGGGAATACTGAGGCGGTCTTGAGTTCGGGGCATGGAGGCACTGTTGTCTCTGCGTTCATGCTAGATGGTGATATGAATAATGCGGCCCCGTGGGAGGGGATGGCATCTAGATGGCAGTTGAGCAGCGATCCGATCTTGGTTTGGTCAAGATCGGATCGGAAAGGTCGTTTCCGATCGAGTCCATGGAACGACGGTGTACCTGGTTCAGGGGTTGATCATTGGAGGGCCGACGATCTTTCTATCCTGGATGGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.69

Weight (kDa)

4.54

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 125
AclWI GGATC 2 cut(s) 164, 204
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 3 cut(s) 136, 137, 248
AjnI CCWGG 2 cut(s) 241, 285
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 2 cut(s) 164, 204
AoxI GGCC 2 cut(s) 126, 267
ApeKI GCWGC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 127, 267
AsuHPI GGTGA 1 cut(s) 122
BbvI GCAGC 1 cut(s) 177
BccI CCATC 4 cut(s) 101, 136, 147, 284
BciT130I CCWGG 2 cut(s) 243, 287
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 2 cut(s) 104, 150
BisI GCNGC 2 cut(s) 126, 166
BlsI GCNGC 2 cut(s) 127, 167
Bme1390I CCNGG 2 cut(s) 243, 287
BmgT120I GGNCC 2 cut(s) 127, 267
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 2 cut(s) 243, 287
BmsI GCATC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 131, 224
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 137, 248
BseBI CCWGG 2 cut(s) 243, 287
BseDI CCNNGG 2 cut(s) 131, 224
BseGI GGATG 2 cut(s) 147, 295
BseLI CCNNNNNNNGG 3 cut(s) 136, 137, 248
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 218
BshFI GGCC 2 cut(s) 128, 269
BsiEI CGRYCG 1 cut(s) 218
BslI CCNNNNNNNGG 3 cut(s) 136, 137, 248
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 2 cut(s) 128, 269
Bsp143I GATC 7 cut(s) 169, 174, 191, 196, 215, 256, 274
Bsp19I CCATGG 1 cut(s) 224
BspACI CCGC 2 cut(s) 56, 125
BspANI GGCC 2 cut(s) 128, 269
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 2 cut(s) 164, 204
BssECI CCNNGG 2 cut(s) 131, 224
BssMI GATC 7 cut(s) 169, 174, 191, 196, 215, 256, 274
BssT1I CCWWGG 1 cut(s) 224
Bst2UI CCWGG 2 cut(s) 243, 287
Bst4CI ACNGT 2 cut(s) 85, 236
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 2 cut(s) 131, 224
BstENI CCTNNNNNAGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 147, 295
BstKTI GATC 7 cut(s) 172, 177, 194, 199, 218, 259, 277
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 7 cut(s) 169, 174, 191, 196, 215, 256, 274
BstMCI CGRYCG 1 cut(s) 218
BstNI CCWGG 2 cut(s) 243, 287
BstSCI CCNGG 2 cut(s) 241, 285
BstV1I GCAGC 1 cut(s) 177
BsuRI GGCC 2 cut(s) 128, 269
BtgI CCRYGG 2 cut(s) 131, 224
BtsCI GGATG 2 cut(s) 147, 295
BtsIMutI CAGTG 1 cut(s) 81
Cfr13I GGNCC 2 cut(s) 127, 267
CsiI ACCWGGT 1 cut(s) 241
Csp6I GTAC 1 cut(s) 239
CviAII CATG 3 cut(s) 74, 100, 225
CviJI RGCY 2 cut(s) 128, 269
CviKI_1 RGCY 2 cut(s) 128, 269
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 1 cut(s) 51
DpnI GATC 7 cut(s) 171, 176, 193, 198, 217, 258, 276
DpnII GATC 7 cut(s) 169, 174, 191, 196, 215, 256, 274
Eco130I CCWWGG 1 cut(s) 224
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 241, 285
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 3 cut(s) 77, 103, 228
FaiI YATR 4 cut(s) 75, 101, 116, 226
FatI CATG 3 cut(s) 73, 99, 224
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 126, 166
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 126, 166
FspBI CTAG 2 cut(s) 104, 150
GluI GCNGC 2 cut(s) 126, 166
HaeIII GGCC 2 cut(s) 128, 269
Hin1II CATG 3 cut(s) 77, 103, 228
HinfI GANTC 1 cut(s) 220
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 4 cut(s) 174, 196, 201, 215
Hpy188III TCNNGA 4 cut(s) 31, 61, 150, 189
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 2 cut(s) 236, 275
HpyCH4III ACNGT 2 cut(s) 85, 236
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 3 cut(s) 77, 103, 228
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 7 cut(s) 169, 174, 191, 196, 215, 256, 274
LpnPI CCDG 4 cut(s) 228, 234, 255, 272
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 155
MabI ACCWGGT 1 cut(s) 241
MaeI CTAG 2 cut(s) 104, 150
MaeIII GTNAC 1 cut(s) 293
MalI GATC 7 cut(s) 171, 176, 193, 198, 217, 258, 276
MboI GATC 7 cut(s) 169, 174, 191, 196, 215, 256, 274
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 4 cut(s) 46, 71, 130, 258
MslI CAYNNNNRTG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 243, 287
MvaI CCWGG 2 cut(s) 243, 287
NcoI CCATGG 1 cut(s) 224
NdeII GATC 7 cut(s) 169, 174, 191, 196, 215, 256, 274
NlaIII CATG 3 cut(s) 77, 103, 228
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 285
PkrI GCNGC 2 cut(s) 127, 167
Ple19I CGATCG 1 cut(s) 218
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 241, 285
PspGI CCWGG 2 cut(s) 241, 285
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 2 cut(s) 127, 267
PvuI CGATCG 1 cut(s) 218
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 151
SatI GCNGC 2 cut(s) 126, 166
Sau3AI GATC 7 cut(s) 169, 174, 191, 196, 215, 256, 274
Sau96I GGNCC 2 cut(s) 127, 267
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 2 cut(s) 243, 287
SetI ASST 2 cut(s) 208, 244
SexAI ACCWGGT 1 cut(s) 241
SfaNI GCATC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SsiI CCGC 2 cut(s) 56, 125
SspMI CTAG 2 cut(s) 104, 150
StyD4I CCNGG 2 cut(s) 241, 285
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 85, 236
TaqI TCGA 1 cut(s) 218
TauI GCSGC 1 cut(s) 128
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 88, 131
TspRI CASTG 1 cut(s) 88
XagI CCTNNNNNAGG 1 cut(s) 246
XbaI TCTAGA 1 cut(s) 149
XspI CTAG 2 cut(s) 104, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.