Rh5CG574500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000576
Physical Location & Seq
Forward (+)
81417359 .. 81421044
3686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG574500.1

Sequence Viewer

Length: 1095 bp
ATGGCGGATCTTGGTCTGCTTATTCTCTTCCTCGTGGCGCTGGGTAGCGCTGAGGCTGTGTTGGTGTCGGGGGTTGGAGGCGTTGTTGGATCCGCGTCCAAGCTTGACGGTGAAGTGCAAGATGCGGCCTCGCTTGCGGGGATGGCATCTCGGTGGTGGGTGAGTGGTGATCCGGTCTTGGTTTGGTCAAGATCGGATCGGCGGGGTCGTTTCCGATCAGATCCAAGGGACGATGGTGCATCTAAGAATGGCATCTTGATTAACCAAATCTGGTTTGGTGTTCCTATTGATAGTGATGATGGATCTACTCTTGATCCATCAATCTATAGCGGAGGCCAGGTTACTCTTGTTGGAGGTGGTGGTGATTTGTGGTGGGGTTGCGTGCAACAGTGTGGCGAATCTGGGCGAGGTGATAGCTTCGGCTTCTTCTCCTCTTCCTTGGAATCTTCCGATGGTTGTAGCGGTCTTGGGAGCAACGCCTCTCTAAGGGTCGCCATCTCCCGTATCTTCTCCTTGTTCAAGGGGATATTGTTAGGTTTCGATCTACTATTTATTGGTGGAGGCGTTTTGGTCTGGGTTTACAGCGGGGCTGTGGATCTTGGCAGGGAAGCTCCAAATGTTTCTGGAGTTTGGGCTCATTGTGGTGGTACAGGCTCGGACGTTCACCTTCATGGGGATGTGTTGCATCTCGTCTACAAGTGGGAGGGTTGGTGGCTAGGCCACTCGGGTTATGGATCAGGACATCAGGTTAGAAGTGAGGATTTAGTTACTAGCTTTGGACGAGACATCGCCGATGCTAGGCCGGGCAAGAGGATCTACCGTGTAGGGGTTGCAGGGGAGCATGTTCTGGTGGTAGCACTGTCCGGGTTTTGTTGGGTTCCGATCGGGATTGGTGACAAAGAGGGCAGCAAGGGTGACAACTTTTGGTATTGTGCTATTAGACGAAGATCGTTGGACGATGGGCAAATGACCTGCAACCTCTCTAGACTGGACATGCTGTGCGACACTGCAAGGGGCGGTGACCCAAATGGCACCGGTGAATGGGTTGAGGATGGGTTGCCTAATTTTTTGGGTACTTATGGTAGATGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

38.59

Weight (kDa)

4.98

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 980
AccB1I GGYRCC 1 cut(s) 1031
AccI GTMKAC 1 cut(s) 693
AccII CGCG 1 cut(s) 95
AciI CCGC 9 cut(s) 5, 93, 125, 137, 202, 330, 462, 585, 1017
AfaI GTAC 2 cut(s) 649, 1075
AfeI AGCGCT 1 cut(s) 49
AfiI CCNNNNNNNGG 5 cut(s) 486, 673, 798, 826, 1041
AgeI ACCGGT 1 cut(s) 1034
AgsI TTSAA 1 cut(s) 520
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 4 cut(s) 103, 417, 611, 774
AluI AGCT 4 cut(s) 103, 417, 611, 774
Alw26I GTCTC 1 cut(s) 777
Ama87I CYCGRG 1 cut(s) 724
Aor51HI AGCGCT 1 cut(s) 49
AoxI GGCC 5 cut(s) 126, 334, 718, 800, 1089
ApeKI GCWGC 1 cut(s) 906
AsiGI ACCGGT 1 cut(s) 1034
AspLEI GCGC 2 cut(s) 40, 50
AspS9I GGNCC 1 cut(s) 1089
AsuC2I CCSGG 2 cut(s) 804, 865
AvaI CYCGRG 1 cut(s) 724
BamHI GGATCC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 1031
BanII GRGCYC 1 cut(s) 637
BauI CACGAG 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 918
BccI CCATC 9 cut(s) 136, 227, 293, 325, 446, 503, 953, 1046, 1080
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 2 cut(s) 804, 865
BcoDI GTCTC 1 cut(s) 777
BfaI CTAG 4 cut(s) 716, 771, 798, 984
BfmI CTRYAG 1 cut(s) 325
BfoI RGCGCY 2 cut(s) 41, 51
BfuAI ACCTGC 1 cut(s) 980
BisI GCNGC 2 cut(s) 126, 907
BlsI GCNGC 2 cut(s) 127, 908
Bme1390I CCNGG 3 cut(s) 338, 804, 865
BmeT110I CYCGRG 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 1089
BmiI GGNNCC 3 cut(s) 91, 879, 1033
BmrFI CCNGG 3 cut(s) 338, 804, 865
BmsI GCATC 6 cut(s) 112, 155, 248, 261, 694, 784
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 804, 865
BsaJI CCNNGG 2 cut(s) 224, 438
BsaWI WCCGGW 2 cut(s) 172, 1034
BsaXI ACNNNNNCTCC 6 cut(s) 69, 99, 324, 354, 695, 725
Bsc4I CCNNNNNNNGG 5 cut(s) 486, 673, 798, 826, 1041
Bse118I RCCGGY 1 cut(s) 1034
Bse1I ACTGG 1 cut(s) 993
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 224, 438
BseGI GGATG 3 cut(s) 147, 682, 1057
BseLI CCNNNNNNNGG 5 cut(s) 486, 673, 798, 826, 1041
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 993
BseRI GAGGAG 1 cut(s) 421
BseXI GCAGC 1 cut(s) 918
BseYI CCCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 885
BshFI GGCC 5 cut(s) 128, 336, 720, 802, 1091
BshNI GGYRCC 1 cut(s) 1031
BshTI ACCGGT 1 cut(s) 1034
BsiEI CGRYCG 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 724
BsiSI CCGG 4 cut(s) 173, 803, 864, 1035
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 5 cut(s) 486, 673, 798, 826, 1041
BsmAI GTCTC 1 cut(s) 777
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 5 cut(s) 128, 336, 720, 802, 1091
BsoBI CYCGRG 1 cut(s) 724
Bsp1286I GDGCHC 1 cut(s) 637
BspACI CCGC 9 cut(s) 5, 93, 125, 137, 202, 330, 462, 585, 1017
BspANI GGCC 5 cut(s) 128, 336, 720, 802, 1091
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 91, 879, 1033
BspMI ACCTGC 1 cut(s) 980
BspT107I GGYRCC 1 cut(s) 1031
BsrFI RCCGGY 1 cut(s) 1034
BsrI ACTGG 1 cut(s) 993
BssAI RCCGGY 1 cut(s) 1034
BssECI CCNNGG 2 cut(s) 224, 438
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 224, 438
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 4 cut(s) 110, 390, 821, 861
Bst6I CTCTTC 2 cut(s) 32, 439
BstC8I GCNNGC 2 cut(s) 135, 383
BstDEI CTNAG 3 cut(s) 51, 243, 485
BstEII GGTNACC 1 cut(s) 1019
BstENI CCTNNNNNAGG 1 cut(s) 484
BstF5I GGATG 3 cut(s) 147, 682, 1057
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 2 cut(s) 41, 51
BstHHI GCGC 2 cut(s) 40, 50
BstMAI GTCTC 1 cut(s) 777
BstMCI CGRYCG 1 cut(s) 885
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 2 cut(s) 845, 997
BstPI GGTNACC 1 cut(s) 1019
BstSCI CCNGG 3 cut(s) 336, 802, 863
BstSFI CTRYAG 1 cut(s) 325
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 918
BstX2I RGATCY 6 cut(s) 7, 89, 220, 302, 595, 813
BstYI RGATCY 6 cut(s) 7, 89, 220, 302, 595, 813
BsuRI GGCC 5 cut(s) 128, 336, 720, 802, 1091
BtgZI GCGATG 1 cut(s) 772
BtsCI GGATG 3 cut(s) 147, 682, 1057
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 3 cut(s) 395, 857, 1005
BveI ACCTGC 1 cut(s) 980
Cac8I GCNNGC 2 cut(s) 135, 383
CfoI GCGC 2 cut(s) 40, 50
Cfr10I RCCGGY 1 cut(s) 1034
Cfr13I GGNCC 1 cut(s) 1089
CseI GACGC 1 cut(s) 84
Csp6I GTAC 2 cut(s) 648, 1074
CspAI ACCGGT 1 cut(s) 1034
CviAII CATG 3 cut(s) 671, 842, 994
CviQI GTAC 2 cut(s) 648, 1074
DdeI CTNAG 3 cut(s) 51, 243, 485
Eam1104I CTCTTC 2 cut(s) 32, 439
EarI CTCTTC 2 cut(s) 32, 439
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 224, 438
Eco24I GRGCYC 1 cut(s) 637
Eco47III AGCGCT 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 724
Eco91I GGTNACC 1 cut(s) 1019
EcoNI CCTNNNNNAGG 1 cut(s) 484
EcoO65I GGTNACC 1 cut(s) 1019
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 224, 438
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 2 cut(s) 224, 438
FaeI CATG 3 cut(s) 674, 845, 997
FaiI YATR 6 cut(s) 327, 672, 732, 843, 995, 1080
FaqI GGGAC 1 cut(s) 242
FatI CATG 3 cut(s) 670, 841, 993
FauI CCCGC 3 cut(s) 130, 195, 578
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 2 cut(s) 126, 907
FokI GGATG 3 cut(s) 154, 689, 1064
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 2 cut(s) 126, 907
FspBI CTAG 4 cut(s) 716, 771, 798, 984
GlaI GCGC 2 cut(s) 39, 49
GluI GCNGC 2 cut(s) 126, 907
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 645
HaeII RGCGCY 2 cut(s) 41, 51
HaeIII GGCC 5 cut(s) 128, 336, 720, 802, 1091
HapII CCGG 4 cut(s) 173, 803, 864, 1035
HgaI GACGC 1 cut(s) 84
HhaI GCGC 2 cut(s) 40, 50
Hin1II CATG 3 cut(s) 674, 845, 997
Hin6I GCGC 2 cut(s) 38, 48
HinP1I GCGC 2 cut(s) 38, 48
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 398, 443
HpaII CCGG 4 cut(s) 173, 803, 864, 1035
Hpy166II GTNNAC 3 cut(s) 580, 664, 694
Hpy188I TCNGA 6 cut(s) 196, 215, 220, 451, 658, 882
Hpy188III TCNNGA 7 cut(s) 189, 256, 311, 624, 738, 886, 984
Hpy8I GTNNAC 3 cut(s) 580, 664, 694
HpyAV CCTTC 1 cut(s) 677
HpyCH4III ACNGT 4 cut(s) 110, 390, 821, 861
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 7 cut(s) 118, 239, 385, 685, 833, 975, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
HpyF3I CTNAG 3 cut(s) 51, 243, 485
HpySE526I ACGT 1 cut(s) 660
Hsp92II CATG 3 cut(s) 674, 845, 997
HspAI GCGC 2 cut(s) 38, 48
LmnI GCTCC 3 cut(s) 471, 616, 838
Lsp1109I GCAGC 1 cut(s) 918
LweI GCATC 6 cut(s) 112, 155, 248, 261, 694, 784
MaeI CTAG 4 cut(s) 716, 771, 798, 984
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 5 cut(s) 340, 766, 893, 914, 1019
MboII GAAGA 6 cut(s) 19, 418, 426, 438, 499, 957
MflI RGATCY 6 cut(s) 7, 89, 220, 302, 595, 813
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 1 cut(s) 1063
MmeI TCCRAC 4 cut(s) 55, 67, 331, 933
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 4 cut(s) 151, 642, 669, 675
MspA1I CMGCKG 1 cut(s) 585
MspI CCGG 4 cut(s) 173, 803, 864, 1035
MspR9I CCNGG 3 cut(s) 338, 804, 865
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NciI CCSGG 2 cut(s) 804, 865
NlaIII CATG 3 cut(s) 674, 845, 997
NlaIV GGNNCC 3 cut(s) 91, 879, 1033
NmuCI GTSAC 3 cut(s) 893, 914, 1019
NspI RCATGY 2 cut(s) 845, 997
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 2 cut(s) 398, 443
PinAI ACCGGT 1 cut(s) 1034
PkrI GCNGC 2 cut(s) 127, 908
Ple19I CGATCG 1 cut(s) 885
Psp6I CCWGG 1 cut(s) 336
PspEI GGTNACC 1 cut(s) 1019
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 3 cut(s) 91, 879, 1033
PspPI GGNCC 1 cut(s) 1089
PsuI RGATCY 6 cut(s) 7, 89, 220, 302, 595, 813
PvuI CGATCG 1 cut(s) 885
RsaI GTAC 2 cut(s) 649, 1075
RsaNI GTAC 2 cut(s) 648, 1074
RseI CAYNNNNRTG 4 cut(s) 151, 642, 669, 675
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 2 cut(s) 126, 907
Sau96I GGNCC 1 cut(s) 1089
ScrFI CCNGG 3 cut(s) 338, 804, 865
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 6 cut(s) 112, 155, 248, 261, 694, 784
SfcI CTRYAG 1 cut(s) 325
SgrAI CRCCGGYG 1 cut(s) 1034
SmiMI CAYNNNNRTG 4 cut(s) 151, 642, 669, 675
Sse9I AATT 1 cut(s) 1063
SsiI CCGC 9 cut(s) 5, 93, 125, 137, 202, 330, 462, 585, 1017
SspMI CTAG 4 cut(s) 716, 771, 798, 984
StyD4I CCNGG 3 cut(s) 336, 802, 863
StyI CCWWGG 2 cut(s) 224, 438
TaaI ACNGT 4 cut(s) 110, 390, 821, 861
TaiI ACGT 1 cut(s) 663
TaqI TCGA 1 cut(s) 540
TasI AATT 1 cut(s) 1063
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 2 cut(s) 398, 443
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 3 cut(s) 395, 864, 1012
TseFI GTSAC 3 cut(s) 893, 914, 1019
TseI GCWGC 1 cut(s) 906
Tsp45I GTSAC 3 cut(s) 893, 914, 1019
TspDTI ATGAA 1 cut(s) 659
TspRI CASTG 3 cut(s) 395, 864, 1012
XagI CCTNNNNNAGG 1 cut(s) 484
XbaI TCTAGA 1 cut(s) 983
XceI RCATGY 2 cut(s) 845, 997
XcmI CCANNNNNNNNNTGG 2 cut(s) 272, 728
XmiI GTMKAC 1 cut(s) 693
XspI CTAG 4 cut(s) 716, 771, 798, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.