Rh2BG494200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000576
Physical Location & Seq
Forward (+)
69610837 .. 69611220
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG494200.1

Sequence Viewer

Length: 384 bp
ATGAGGGCGAATCTGCTTACCCCCGGCCTGGGCACTCCAGTGGTAGGGATGATGGTATGGCTCTGCTCTTCGGAGAAGATTACTTCTGATGGTGATGCTGCCTGGTGCAGCGATGGGATTTACCATGTAGGTGGTGGCGGTGGCTTATTAGTTGGCTGCGACGGTGTGCCTGTCCAGTGGGGTGGATCCTGTGGGGTGCCCTTAGCAATTTCTGCTTGGGCCCTCTGTGGTTCACTCTGTTTTGTGGGCTCTATGCAAGGCTGGGTTTGGGTGGGCTGCACATTCTATTTTAGGATTTGGGCTGCCTTTGTTAAGGGAGTGGATGGTGATATGTTACCTTTCACTCCAATTACAAATGAAGCGTCTTTCAGAGAACAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.37

Weight (kDa)

4.51

Isoelectric Point (pI)

26.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 180, 193
AfiI CCNNNNNNNGG 3 cut(s) 28, 29, 44
AjnI CCWGG 2 cut(s) 27, 101
AleI CACNNNNGTG 1 cut(s) 38
AlwI GGATC 2 cut(s) 180, 193
AoxI GGCC 2 cut(s) 25, 219
ApaI GGGCCC 1 cut(s) 223
ApeKI GCWGC 5 cut(s) 98, 108, 156, 276, 302
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AspS9I GGNCC 2 cut(s) 219, 220
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 104, 338
BaeGI GKGCMC 3 cut(s) 35, 201, 223
BamHI GGATCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 2 cut(s) 223, 251
BbvI GCAGC 5 cut(s) 85, 120, 143, 263, 289
BccI CCATC 4 cut(s) 46, 83, 107, 317
BciT130I CCWGG 2 cut(s) 29, 103
BcnI CCSGG 1 cut(s) 24
BisI GCNGC 5 cut(s) 99, 109, 157, 277, 303
BlsI GCNGC 5 cut(s) 100, 110, 158, 278, 304
Bme1390I CCNGG 3 cut(s) 24, 29, 103
BmgT120I GGNCC 2 cut(s) 219, 220
BmiI GGNNCC 3 cut(s) 187, 198, 221
BmrFI CCNGG 3 cut(s) 24, 29, 103
BmsI GCATC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 22, 28
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 29, 44
Bse1I ACTGG 2 cut(s) 38, 175
BseBI CCWGG 2 cut(s) 29, 103
BseDI CCNNGG 2 cut(s) 22, 28
BseGI GGATG 2 cut(s) 54, 328
BseLI CCNNNNNNNGG 3 cut(s) 28, 29, 44
BseNI ACTGG 2 cut(s) 38, 175
BseSI GKGCMC 3 cut(s) 35, 201, 223
BseXI GCAGC 5 cut(s) 85, 120, 143, 263, 289
BseYI CCCAGC 1 cut(s) 261
BsgI GTGCAG 2 cut(s) 127, 262
BshFI GGCC 2 cut(s) 27, 221
BshNI GGYRCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 28, 29, 44
BsnI GGCC 2 cut(s) 27, 221
Bsp120I GGGCCC 1 cut(s) 219
Bsp1286I GDGCHC 4 cut(s) 35, 201, 223, 251
Bsp143I GATC 1 cut(s) 185
BspACI CCGC 1 cut(s) 138
BspANI GGCC 2 cut(s) 27, 221
BspLI GGNNCC 3 cut(s) 187, 198, 221
BspPI GGATC 2 cut(s) 180, 193
BspQI GCTCTTC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 196
BsrI ACTGG 2 cut(s) 38, 175
BssECI CCNNGG 2 cut(s) 22, 28
BssMI GATC 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 29, 103
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 202
BstF5I GGATG 2 cut(s) 54, 328
BstKTI GATC 1 cut(s) 188
BstMBI GATC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 2 cut(s) 29, 103
BstSCI CCNGG 3 cut(s) 22, 27, 101
BstSLI GKGCMC 3 cut(s) 35, 201, 223
BstV1I GCAGC 5 cut(s) 85, 120, 143, 263, 289
BstX2I RGATCY 1 cut(s) 185
BstXI CCANNNNNNTGG 2 cut(s) 131, 182
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 2 cut(s) 27, 221
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 54, 328
BtsIMutI CAGTG 2 cut(s) 45, 182
Cfr13I GGNCC 2 cut(s) 219, 220
CseI GACGC 1 cut(s) 351
CviAII CATG 1 cut(s) 125
CviJI RGCY 9 cut(s) 27, 61, 144, 156, 221, 249, 261, 276, 302
CviKI_1 RGCY 9 cut(s) 27, 61, 144, 156, 221, 249, 261, 276, 302
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco24I GRGCYC 2 cut(s) 223, 251
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 27, 101
EcoT38I GRGCYC 2 cut(s) 223, 251
FaeI CATG 1 cut(s) 128
FaiI YATR 4 cut(s) 58, 126, 254, 332
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 99, 109, 157, 277, 303
FokI GGATG 2 cut(s) 61, 335
FriOI GRGCYC 2 cut(s) 223, 251
Fsp4HI GCNGC 5 cut(s) 99, 109, 157, 277, 303
GluI GCNGC 5 cut(s) 99, 109, 157, 277, 303
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 2 cut(s) 27, 221
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 351
Hin1II CATG 1 cut(s) 128
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 104, 338
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 73, 88, 371
Hpy8I GTNNAC 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 108, 256, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 1 cut(s) 185
LguI GCTCTTC 1 cut(s) 73
Lsp1109I GCAGC 5 cut(s) 85, 120, 143, 263, 289
LweI GCATC 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 333
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 2 cut(s) 60, 88
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 4 cut(s) 35, 201, 223, 251
MluCI AATT 2 cut(s) 207, 348
MnlI CCTC 1 cut(s) 233
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 38, 129
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 24, 29, 103
MvaI CCWGG 2 cut(s) 29, 103
MwoI GCNNNNNNNGC 1 cut(s) 212
NciI CCSGG 1 cut(s) 24
NdeII GATC 1 cut(s) 185
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 3 cut(s) 187, 198, 221
OliI CACNNNNGTG 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 5 cut(s) 100, 110, 158, 278, 304
Psp6I CCWGG 2 cut(s) 27, 101
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 2 cut(s) 27, 101
PspN4I GGNNCC 3 cut(s) 187, 198, 221
PspOMI GGGCCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 219, 220
PsuI RGATCY 1 cut(s) 185
RseI CAYNNNNRTG 2 cut(s) 38, 129
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 5 cut(s) 99, 109, 157, 277, 303
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 2 cut(s) 219, 220
ScrFI CCNGG 3 cut(s) 24, 29, 103
SduI GDGCHC 4 cut(s) 35, 201, 223, 251
SetI ASST 2 cut(s) 133, 340
SfaNI GCATC 1 cut(s) 85
SmiMI CAYNNNNRTG 2 cut(s) 38, 129
Sse9I AATT 2 cut(s) 207, 348
SsiI CCGC 1 cut(s) 138
StyD4I CCNGG 3 cut(s) 22, 27, 101
TaaI ACNGT 1 cut(s) 164
TasI AATT 2 cut(s) 207, 348
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 45, 182
TseI GCWGC 5 cut(s) 98, 108, 156, 276, 302
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 2 cut(s) 45, 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.