Rh6DG215700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000576
Physical Location & Seq
Forward (+)
38547012 .. 38548726
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG215700.1

Sequence Viewer

Length: 600 bp
ATGGTGGTTATGGCAGACTTGGGTCTGCTTATTCTCTTCTTCATTGCGCTGGGTGGCGCTGAGGCTGTGTTGATTTCATGGGATGGGGGTGCTGTTTTTTCTGCGTCCAAACTCGATGGTGAAGTGAAAGATGTGGCCTCGTTTGCGGGGATGGCATCTCGGTGGCGGATGAGAGGCGATCCGACCTTGGGTTGGGCTAGATCGGTTCGGAAGGTTCGTTTCCGATCGGGTGATGATTTTTGCCATGTCGATGACCTTGCTGTTGTGGAAGACGATGATCTACTGGTTTGCTTGACCTCGGGATCTGCCATCTCTAATGGCGATACGAGGCTGCCGGAGGTGAGACCGACTCTATTTCCCTCGGGCTCTAACCCTTTGTTGGTGGGGAGGATGACTTCTTTCTACTCATCGGAGGAAGCTGCTTTTGATAGTGGTAACCTGGTGGCAGGGATGTTGGCTGCGAGCTCTGACATCGATGTCTGCGCAGATTGCAACAAAGATCGATGGCAGGACGGGGATGATCTTGGCCCTATGGTGTTTTGCTCATCGCCTGAACAGTTTTTTCTGGAATCGGGCCCTACCAGTGAAGATGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.33

Weight (kDa)

4.24

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
Acc16I TGCGCA 1 cut(s) 484
AciI CCGC 2 cut(s) 146, 166
AclWI GGATC 2 cut(s) 173, 310
AfiI CCNNNNNNNGG 3 cut(s) 188, 192, 379
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 2 cut(s) 419, 465
AluI AGCT 2 cut(s) 419, 465
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 2 cut(s) 173, 310
Ama87I CYCGRG 2 cut(s) 298, 361
AoxI GGCC 3 cut(s) 135, 526, 574
ApaI GGGCCC 1 cut(s) 578
ApeKI GCWGC 3 cut(s) 331, 419, 458
AspLEI GCGC 3 cut(s) 49, 59, 485
AspS9I GGNCC 3 cut(s) 527, 574, 575
AsuHPI GGTGA 3 cut(s) 131, 242, 352
AvaI CYCGRG 2 cut(s) 298, 361
BaeGI GKGCMC 1 cut(s) 578
BanII GRGCYC 3 cut(s) 368, 467, 578
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 467
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 3 cut(s) 318, 406, 445
BccI CCATC 5 cut(s) 77, 110, 145, 317, 498
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 60
BisI GCNGC 3 cut(s) 332, 420, 459
BlsI GCNGC 3 cut(s) 333, 421, 460
Bme1390I CCNGG 1 cut(s) 440
BmeT110I CYCGRG 2 cut(s) 298, 361
BmgT120I GGNCC 3 cut(s) 527, 574, 575
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 1 cut(s) 164
BoxI GACNNNNGTC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 334, 366
Bpu10I CCTNAGC 1 cut(s) 60
Bsa29I ATCGAT 2 cut(s) 474, 502
BsaI GGTCTC 1 cut(s) 337
BsaJI CCNNGG 3 cut(s) 186, 297, 360
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 192, 379
Bse1I ACTGG 2 cut(s) 288, 582
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 440
BseCI ATCGAT 2 cut(s) 474, 502
BseDI CCNNGG 3 cut(s) 186, 297, 360
BseGI GGATG 6 cut(s) 88, 156, 174, 396, 456, 523
BseLI CCNNNNNNNGG 3 cut(s) 188, 192, 379
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 288, 582
BseSI GKGCMC 1 cut(s) 578
BseXI GCAGC 3 cut(s) 318, 406, 445
BseYI CCCAGC 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 3 cut(s) 137, 528, 576
BshVI ATCGAT 2 cut(s) 474, 502
BsiEI CGRYCG 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 467
BsiHKCI CYCGRG 2 cut(s) 298, 361
BsiSI CCGG 1 cut(s) 335
BslI CCNNNNNNNGG 3 cut(s) 188, 192, 379
BsmAI GTCTC 1 cut(s) 337
BsnI GGCC 3 cut(s) 137, 528, 576
Bso31I GGTCTC 1 cut(s) 337
BsoBI CYCGRG 2 cut(s) 298, 361
Bsp120I GGGCCC 1 cut(s) 574
Bsp1286I GDGCHC 3 cut(s) 368, 467, 578
Bsp143I GATC 7 cut(s) 178, 200, 224, 277, 302, 499, 520
BspACI CCGC 2 cut(s) 146, 166
BspANI GGCC 3 cut(s) 137, 528, 576
BspCNI CTCAG 1 cut(s) 52
BspDI ATCGAT 2 cut(s) 474, 502
BspLI GGNNCC 1 cut(s) 576
BspPI GGATC 2 cut(s) 173, 310
BspTNI GGTCTC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 2 cut(s) 288, 582
BssECI CCNNGG 3 cut(s) 186, 297, 360
BssMI GATC 7 cut(s) 178, 200, 224, 277, 302, 499, 520
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 558
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 1 cut(s) 60
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 6 cut(s) 88, 156, 174, 396, 456, 523
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 3 cut(s) 49, 59, 485
BstKTI GATC 7 cut(s) 181, 203, 227, 280, 305, 502, 523
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 7 cut(s) 178, 200, 224, 277, 302, 499, 520
BstMCI CGRYCG 1 cut(s) 227
BstMWI GCNNNNNNNGC 3 cut(s) 143, 152, 489
BstNI CCWGG 1 cut(s) 440
BstPAI GACNNNNGTC 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 578
BstV1I GCAGC 3 cut(s) 318, 406, 445
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
Bsu15I ATCGAT 2 cut(s) 474, 502
BsuRI GGCC 3 cut(s) 137, 528, 576
BsuTUI ATCGAT 2 cut(s) 474, 502
BtgZI GCGATG 1 cut(s) 531
BtsCI GGATG 6 cut(s) 88, 156, 174, 396, 456, 523
BtsIMutI CAGTG 1 cut(s) 589
Cac8I GCNNGC 1 cut(s) 463
CfoI GCGC 3 cut(s) 49, 59, 485
Cfr13I GGNCC 3 cut(s) 527, 574, 575
ClaI ATCGAT 2 cut(s) 474, 502
CseI GACGC 1 cut(s) 93
CsiI ACCWGGT 1 cut(s) 438
CviAII CATG 2 cut(s) 78, 245
DdeI CTNAG 1 cut(s) 60
DpnI GATC 7 cut(s) 180, 202, 226, 279, 304, 501, 522
DpnII GATC 7 cut(s) 178, 200, 224, 277, 302, 499, 520
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 465
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 3 cut(s) 368, 467, 578
Eco31I GGTCTC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 465
Eco88I CYCGRG 2 cut(s) 298, 361
Eco91I GGTNACC 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 3 cut(s) 368, 467, 578
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 81, 248
FaiI YATR 4 cut(s) 11, 79, 246, 533
FatI CATG 2 cut(s) 77, 244
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 3 cut(s) 332, 420, 459
FokI GGATG 6 cut(s) 95, 163, 181, 403, 463, 530
FriOI GRGCYC 3 cut(s) 368, 467, 578
Fsp4HI GCNGC 3 cut(s) 332, 420, 459
FspBI CTAG 1 cut(s) 198
FspI TGCGCA 1 cut(s) 484
GlaI GCGC 3 cut(s) 48, 58, 484
GluI GCNGC 3 cut(s) 332, 420, 459
GsaI CCCAGC 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 3 cut(s) 137, 528, 576
HapII CCGG 1 cut(s) 335
HgaI GACGC 1 cut(s) 93
HhaI GCGC 3 cut(s) 49, 59, 485
Hin1II CATG 2 cut(s) 81, 248
Hin6I GCGC 3 cut(s) 47, 57, 483
HinP1I GCGC 3 cut(s) 47, 57, 483
HinfI GANTC 2 cut(s) 349, 569
HpaII CCGG 1 cut(s) 335
HphI GGTGA 3 cut(s) 131, 242, 352
Hpy188I TCNGA 5 cut(s) 183, 210, 224, 412, 469
Hpy188III TCNNGA 2 cut(s) 300, 566
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 558
HpyCH4V TGCA 1 cut(s) 492
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 152, 489
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 2 cut(s) 81, 248
HspAI GCGC 3 cut(s) 47, 57, 483
Kzo9I GATC 7 cut(s) 178, 200, 224, 277, 302, 499, 520
Lsp1109I GCAGC 3 cut(s) 318, 406, 445
LweI GCATC 1 cut(s) 164
MabI ACCWGGT 1 cut(s) 438
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 434
MalI GATC 7 cut(s) 180, 202, 226, 279, 304, 501, 522
MboI GATC 7 cut(s) 178, 200, 224, 277, 302, 499, 520
MboII GAAGA 4 cut(s) 28, 31, 281, 599
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 3 cut(s) 368, 467, 578
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 9 cut(s) 55, 148, 167, 307, 321, 331, 370, 381, 406
MslI CAYNNNNRTG 2 cut(s) 160, 249
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 143, 152, 489
NdeII GATC 7 cut(s) 178, 200, 224, 277, 302, 499, 520
NlaIII CATG 2 cut(s) 81, 248
NlaIV GGNNCC 1 cut(s) 576
NsbI TGCGCA 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PfeI GAWTC 1 cut(s) 569
PkrI GCNGC 3 cut(s) 333, 421, 460
Ple19I CGATCG 1 cut(s) 227
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PshAI GACNNNNGTC 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 438
PspEI GGTNACC 1 cut(s) 434
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 576
PspOMI GGGCCC 1 cut(s) 574
PspPI GGNCC 3 cut(s) 527, 574, 575
PsuI RGATCY 1 cut(s) 302
PvuI CGATCG 1 cut(s) 227
RseI CAYNNNNRTG 2 cut(s) 160, 249
SacI GAGCTC 1 cut(s) 467
SatI GCNGC 3 cut(s) 332, 420, 459
Sau3AI GATC 7 cut(s) 178, 200, 224, 277, 302, 499, 520
Sau96I GGNCC 3 cut(s) 527, 574, 575
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 3 cut(s) 368, 467, 578
SetI ASST 8 cut(s) 188, 216, 258, 299, 342, 421, 441, 467
SexAI ACCWGGT 1 cut(s) 438
SfaNI GCATC 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 160, 249
SsiI CCGC 2 cut(s) 146, 166
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 467
StyD4I CCNGG 1 cut(s) 438
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 558
TaqI TCGA 4 cut(s) 114, 249, 474, 502
TaqII GACCGA 1 cut(s) 361
TfiI GAWTC 1 cut(s) 569
TscAI CASTG 1 cut(s) 589
TseI GCWGC 3 cut(s) 331, 419, 458
TspDTI ATGAA 2 cut(s) 31, 66
TspRI CASTG 1 cut(s) 589
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.