Rh3CG111500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000576
Physical Location & Seq
Forward (+)
8917230 .. 8923825
6596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG111500.1

Sequence Viewer

Length: 684 bp
ATGTTGATTTCATGGGACGGGGGCGCAGTTGTTTCTGCGTCCAAGCCCGATGGTGAAGTGAAAGATGCGGCCTCGTTTGCAGGGATGGCATCTAGGTGGCGGATGAGCGGCGATCCGATCTTGGGTTGGTTTAGATCTATTCGGAAGGTTCGTTTCCGATCACGTGCTGATTTTTGGAGTGCTGGTGATCTTGTTGTCGTGGAGGGTGATGATGTGATGGTTTGCCTGACCTCGAGGACCGCTACTGCTGATGGTGGTCTGAGGCTGCCGGAGGTGAGGCTGGCTCTGCTTCCCTCTGACTTGGACCCTTTGCTGGCGAGGAGGATAACTTCGCTCTGCTTGTCAGAGGAATCTGCCTTTGATGGTGGTAACCCGGTGGCCGGGATGATGGTTGCGAGGTTTGAAATTGGTATCTACGCAGATTGCGGCGAAGATCGATGGCAAAATTGGGATGATCTCGGGCCTATGAATACAGATTTTGTGGCAGATAACACGAATGGCCCCAGTTTCAGATTACAGATTTGTCTCTACTACTCACATCTCTATCAATGTCTAAGTGGAGTGGAATGCCAGCGTGGTGCTATGAGGGAGCTGATCGGGTCGTGCCCACCAAGGAGTTTCAGTGCAGTGATGGAGAAGGAAGAAGATGAGAAAATGGGTTTGCTTGTTCTTCTTGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

24.97

Weight (kDa)

4.71

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 232
AccBSI CCGCTC 1 cut(s) 108
AciI CCGC 5 cut(s) 68, 100, 108, 240, 426
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 378
AcvI CACGTG 1 cut(s) 164
AfiI CCNNNNNNNGG 3 cut(s) 122, 313, 380
AgsI TTSAA 1 cut(s) 404
AluBI AGCT 1 cut(s) 592
AluI AGCT 1 cut(s) 592
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 1 cut(s) 107
Ama87I CYCGRG 2 cut(s) 232, 458
AoxI GGCC 4 cut(s) 69, 378, 461, 499
ApeKI GCWGC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 4 cut(s) 237, 304, 461, 500
AsuC2I CCSGG 2 cut(s) 374, 382
AsuHPI GGTGA 4 cut(s) 65, 197, 218, 286
AvaI CYCGRG 2 cut(s) 232, 458
AvaII GGWCC 2 cut(s) 237, 304
BaeGI GKGCMC 1 cut(s) 608
BbrPI CACGTG 1 cut(s) 164
BbvI GCAGC 1 cut(s) 252
BccI CCATC 8 cut(s) 44, 79, 211, 245, 356, 382, 432, 625
BcnI CCSGG 2 cut(s) 374, 382
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 1 cut(s) 93
BglII AGATCT 1 cut(s) 134
BisI GCNGC 4 cut(s) 69, 109, 266, 427
BlsI GCNGC 4 cut(s) 70, 110, 267, 428
Bme1390I CCNGG 2 cut(s) 374, 382
Bme18I GGWCC 2 cut(s) 237, 304
BmeT110I CYCGRG 2 cut(s) 232, 458
BmgT120I GGNCC 4 cut(s) 237, 304, 461, 500
BmiI GGNNCC 2 cut(s) 306, 502
BmrFI CCNGG 2 cut(s) 374, 382
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 2 cut(s) 55, 98
BmuI ACTGGG 1 cut(s) 498
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpuMI CCSGG 2 cut(s) 374, 382
Bsa29I ATCGAT 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 611
BsaXI ACNNNNNCTCC 4 cut(s) 169, 199, 607, 637
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 313, 380
Bse1I ACTGG 1 cut(s) 504
BseCI ATCGAT 1 cut(s) 436
BseDI CCNNGG 1 cut(s) 611
BseGI GGATG 4 cut(s) 90, 108, 390, 457
BseLI CCNNNNNNNGG 3 cut(s) 122, 313, 380
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 504
BseRI GAGGAG 1 cut(s) 334
BseSI GKGCMC 1 cut(s) 608
BseXI GCAGC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 4 cut(s) 71, 380, 463, 501
BshVI ATCGAT 1 cut(s) 436
BsiHKCI CYCGRG 2 cut(s) 232, 458
BsiSI CCGG 3 cut(s) 269, 374, 381
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 122, 313, 380
BsmAI GTCTC 1 cut(s) 530
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 4 cut(s) 71, 380, 463, 501
BsoBI CYCGRG 2 cut(s) 232, 458
Bsp1286I GDGCHC 1 cut(s) 608
Bsp143I GATC 8 cut(s) 112, 117, 134, 158, 187, 433, 454, 594
BspACI CCGC 5 cut(s) 68, 100, 108, 240, 426
BspANI GGCC 4 cut(s) 71, 380, 463, 501
BspCNI CTCAG 1 cut(s) 252
BspDI ATCGAT 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 306, 502
BspPI GGATC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 108
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 611
BssMI GATC 8 cut(s) 112, 117, 134, 158, 187, 433, 454, 594
BssT1I CCWWGG 1 cut(s) 611
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 3 cut(s) 282, 315, 572
BstDEI CTNAG 2 cut(s) 260, 554
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 4 cut(s) 90, 108, 390, 457
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 8 cut(s) 115, 120, 137, 161, 190, 436, 457, 597
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 8 cut(s) 112, 117, 134, 158, 187, 433, 454, 594
BstMWI GCNNNNNNNGC 3 cut(s) 77, 86, 286
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 372, 380
BstSLI GKGCMC 1 cut(s) 608
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
Bsu15I ATCGAT 1 cut(s) 436
BsuRI GGCC 4 cut(s) 71, 380, 463, 501
BsuTUI ATCGAT 1 cut(s) 436
BtsCI GGATG 4 cut(s) 90, 108, 390, 457
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 628, 633
Cac8I GCNNGC 3 cut(s) 282, 315, 572
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 4 cut(s) 237, 304, 461, 500
ClaI ATCGAT 1 cut(s) 436
CseI GACGC 1 cut(s) 27
CviAII CATG 1 cut(s) 12
CviJI RGCY 9 cut(s) 46, 71, 265, 280, 284, 380, 463, 501, 592
CviKI_1 RGCY 9 cut(s) 46, 71, 265, 280, 284, 380, 463, 501, 592
DdeI CTNAG 2 cut(s) 260, 554
DpnI GATC 8 cut(s) 114, 119, 136, 160, 189, 435, 456, 596
DpnII GATC 8 cut(s) 112, 117, 134, 158, 187, 433, 454, 594
EaeI YGGCCR 1 cut(s) 378
EciI GGCGGA 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 611
Eco47I GGWCC 2 cut(s) 237, 304
Eco72I CACGTG 1 cut(s) 164
Eco88I CYCGRG 2 cut(s) 232, 458
Eco91I GGTNACC 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 611
ErhI CCWWGG 1 cut(s) 611
FaeI CATG 1 cut(s) 15
FaiI YATR 3 cut(s) 13, 467, 584
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 11
Fnu4HI GCNGC 4 cut(s) 69, 109, 266, 427
FokI GGATG 4 cut(s) 97, 115, 397, 464
Fsp4HI GCNGC 4 cut(s) 69, 109, 266, 427
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 25
GluI GCNGC 4 cut(s) 69, 109, 266, 427
HaeIII GGCC 4 cut(s) 71, 380, 463, 501
HapII CCGG 3 cut(s) 269, 374, 381
HgaI GACGC 1 cut(s) 27
HhaI GCGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 15
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 350
HpaII CCGG 3 cut(s) 269, 374, 381
HphI GGTGA 4 cut(s) 65, 197, 218, 286
Hpy188I TCNGA 7 cut(s) 117, 144, 158, 261, 298, 346, 512
HpyAV CCTTC 2 cut(s) 139, 631
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 80, 626
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 86, 286
HpyF3I CTNAG 2 cut(s) 260, 554
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 1 cut(s) 15
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 8 cut(s) 112, 117, 134, 158, 187, 433, 454, 594
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 2 cut(s) 55, 98
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 368
MalI GATC 8 cut(s) 114, 119, 136, 160, 189, 435, 456, 596
MbiI CCGCTC 1 cut(s) 108
MboI GATC 8 cut(s) 112, 117, 134, 158, 187, 433, 454, 594
MboII GAAGA 4 cut(s) 443, 653, 656, 662
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 608
MluCI AATT 2 cut(s) 405, 445
MseI TTAA 1 cut(s) 682
MslI CAYNNNNRTG 1 cut(s) 94
MspI CCGG 3 cut(s) 269, 374, 381
MspR9I CCNGG 2 cut(s) 374, 382
Mva1269I GAATGC 1 cut(s) 572
MwoI GCNNNNNNNGC 3 cut(s) 77, 86, 286
NciI CCSGG 2 cut(s) 374, 382
NdeII GATC 8 cut(s) 112, 117, 134, 158, 187, 433, 454, 594
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 2 cut(s) 306, 502
PaeR7I CTCGAG 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PctI GAATGC 1 cut(s) 572
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 4 cut(s) 70, 110, 267, 428
PmaCI CACGTG 1 cut(s) 164
PmlI CACGTG 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 164
PspCI CACGTG 1 cut(s) 164
PspEI GGTNACC 1 cut(s) 368
PspN4I GGNNCC 2 cut(s) 306, 502
PspPI GGNCC 4 cut(s) 237, 304, 461, 500
PspXI VCTCGAGB 1 cut(s) 232
PsuI RGATCY 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 94
SaqAI TTAA 1 cut(s) 682
SatI GCNGC 4 cut(s) 69, 109, 266, 427
Sau3AI GATC 8 cut(s) 112, 117, 134, 158, 187, 433, 454, 594
Sau96I GGNCC 4 cut(s) 237, 304, 461, 500
ScrFI CCNGG 2 cut(s) 374, 382
SduI GDGCHC 1 cut(s) 608
SetI ASST 7 cut(s) 98, 150, 166, 233, 276, 401, 594
SfaNI GCATC 2 cut(s) 55, 98
Sfr274I CTCGAG 1 cut(s) 232
SinI GGWCC 2 cut(s) 237, 304
SlaI CTCGAG 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 2 cut(s) 405, 445
SsiI CCGC 5 cut(s) 68, 100, 108, 240, 426
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 372, 380
StyI CCWWGG 1 cut(s) 611
TaiI ACGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 233, 436
TasI AATT 2 cut(s) 405, 445
TauI GCSGC 3 cut(s) 71, 111, 429
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 682
Tru9I TTAA 1 cut(s) 682
TscAI CASTG 2 cut(s) 628, 633
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 482
TspRI CASTG 2 cut(s) 628, 633
VpaK11BI GGWCC 2 cut(s) 237, 304
XhoI CTCGAG 1 cut(s) 232
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.