Rh5CG514300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000576
Physical Location & Seq
Reverse (-)
71753900 .. 71754313
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG514300.1

Sequence Viewer

Length: 414 bp
ATGGCAGATCTCGGTCTGCTTATTCTCTTCCTCGTGGCGCTGGGTAGTGCTGAGACTATGTTGGTGTCGAGGGTTGGGGGCGTTGTTGGATCAGCGTCCAAGCTCGACGGTAAAGTGCAAGATGCTACCTCGTTTGCAGGGATGGCATCTCGGTGGCGGGTGAGTGGTGATCCGGTCTTGGTTTGGTCAAGATCAGATCGGAAAGGTCTATTCCGATTGGATCCAAGGGACGATGGTGCATCTAAGAATGGCATCTTGATTAACCAAATCTGGTTTGGTGTTCCTATTGATAGTGATAATGGATCTACTCTTGATCCGTCAATCTATGGCGGAGGCCAGGTTACTCTTGTTGGAGGTGGTGGTGATCTATGGTGGGGTTGCGTGCAACCTGAGTGGCGAATCTGGGCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.62

Weight (kDa)

5.24

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 157, 330
AclWI GGATC 6 cut(s) 97, 164, 215, 228, 308, 310
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 6 cut(s) 97, 164, 215, 228, 308, 310
AoxI GGCC 1 cut(s) 334
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 3 cut(s) 172, 179, 374
BamHI GGATCC 1 cut(s) 220
BauI CACGAG 1 cut(s) 32
BccI CCATC 2 cut(s) 136, 227
BciT130I CCWGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 41
BglII AGATCT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 338
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 4 cut(s) 112, 155, 248, 261
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 42, 381
BseYI CCCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 336
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 336
Bsp143I GATC 9 cut(s) 7, 89, 169, 191, 196, 220, 302, 313, 364
BspACI CCGC 2 cut(s) 157, 330
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 2 cut(s) 43, 382
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 6 cut(s) 97, 164, 215, 228, 308, 310
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 9 cut(s) 7, 89, 169, 191, 196, 220, 302, 313, 364
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 3 cut(s) 51, 243, 390
BstF5I GGATG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 9 cut(s) 10, 92, 172, 194, 199, 223, 305, 316, 367
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 9 cut(s) 7, 89, 169, 191, 196, 220, 302, 313, 364
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 336
BstX2I RGATCY 3 cut(s) 7, 220, 302
BstYI RGATCY 3 cut(s) 7, 220, 302
BsuRI GGCC 1 cut(s) 336
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 383
CfoI GCGC 1 cut(s) 40
CseI GACGC 1 cut(s) 84
CspCI CAANNNNNGTGG 2 cut(s) 374, 409
CviJI RGCY 2 cut(s) 103, 336
CviKI_1 RGCY 2 cut(s) 103, 336
DdeI CTNAG 3 cut(s) 51, 243, 390
DpnI GATC 9 cut(s) 9, 91, 171, 193, 198, 222, 304, 315, 366
DpnII GATC 9 cut(s) 7, 89, 169, 191, 196, 220, 302, 313, 364
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaiI YATR 3 cut(s) 59, 327, 370
FaqI GGGAC 1 cut(s) 242
FauI CCCGC 1 cut(s) 150
FokI GGATG 1 cut(s) 154
GlaI GCGC 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 40
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 1 cut(s) 399
HpaII CCGG 1 cut(s) 173
HphI GGTGA 3 cut(s) 172, 179, 374
Hpy188I TCNGA 3 cut(s) 196, 201, 215
Hpy188III TCNNGA 3 cut(s) 189, 256, 311
Hpy99I CGWCG 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 118, 137, 239, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 3 cut(s) 51, 243, 390
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 9 cut(s) 7, 89, 169, 191, 196, 220, 302, 313, 364
LpnPI CCDG 8 cut(s) 26, 123, 186, 256, 323, 350, 388, 402
LweI GCATC 4 cut(s) 112, 155, 248, 261
MaeIII GTNAC 1 cut(s) 340
MalI GATC 9 cut(s) 9, 91, 171, 193, 198, 222, 304, 315, 366
MboI GATC 9 cut(s) 7, 89, 169, 191, 196, 220, 302, 313, 364
MboII GAAGA 1 cut(s) 19
MflI RGATCY 3 cut(s) 7, 220, 302
MmeI TCCRAC 2 cut(s) 67, 331
MnlI CCTC 6 cut(s) 41, 63, 139, 326, 347, 402
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 151
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 9 cut(s) 7, 89, 169, 191, 196, 220, 302, 313, 364
NlaIV GGNNCC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 222
PsuI RGATCY 3 cut(s) 7, 220, 302
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 261
Sau3AI GATC 9 cut(s) 7, 89, 169, 191, 196, 220, 302, 313, 364
ScrFI CCNGG 1 cut(s) 338
SetI ASST 7 cut(s) 105, 131, 208, 342, 358, 391, 413
SfaNI GCATC 4 cut(s) 112, 155, 248, 261
SmiMI CAYNNNNRTG 1 cut(s) 151
SsiI CCGC 2 cut(s) 157, 330
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 68, 105
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TspGWI ACGGA 1 cut(s) 306
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.