Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000576

Physical Location & Seq

Genomic Coordinates Forward (+)

87710430 .. 87711424

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG551700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCGGATCTTGGTCTGCTTATTCTCTTCCTCGTGGCGCTGGGTAGCGCTGAGGCTGTGTTGGTGTCGGGGGTTGGAGGCGTTGTTGGATCCGCGTCCAAGCTTGACGGTGAAGTGCAAGATGCGGCCTCGCTTGCGGGGATGGCATCTCGGTGGTGGGTGAGTGGTGATCCGGTCTTGGTTTGGTCAAGATCGGATCGGCGGGGTCGTTTCCGATCAGATCCAAGGGACGATGGTGCATCTAAGAATGGCATCTTGATTAACCAAATCTGGTTTGGTGTTCCTATTGATAGTGATGATGGATCTACTCTTGATCCATCAATCTATAGCGGAGGCCAGGTTACTCTTGTTGGAGGTGGTGGTGATTTGTGGTGGGGTTGCGTGCAACAGTGTGGCGAATCTGGGCGAGGTGATAGCTTCGGCTTCTTCTCCTCTTCCTTGGAATCTTCCGATGGTTGTAGCGGTGCATATCTCGTTTTCGGGGCAGTTGGCTGTCTTTGGTTATTGAGGAGAAAGCATCTGGTCTTCAATGGTGGAGGCAGTAATTTGTCTCTGGTTGTTGACATTGGGCTTGATCTGGGGGCCACTGGTGGTGTTTATGACGGCGGTGGAGGTGGGACAGAAGCTGGCATGTATATCGGTGGCGGCTTGCTTGCCTTTTCATCTAGGTTTTTGCCTAAGGGTTATGATTGGACTGCTAGGGTTTTTTGGACCCATGCAGTTCTTTTGTCTTTAAGTTTTAATGTAGCTTTGGCCCTTCATTCTTTTGTGAATGATGGGCCTATAGTTTTCTTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

27.65

Weight (kDa)

4.73

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496101
rosa_laevigata	RLG00000001000 RLG00000003686 RLG00000004631 RLG00000004905 RLG00000005430 RLG00000005713 RLG00000007389 RLG00000011894 RLG00000014857 RLG00000017726 RLG00000020028 RLG00000020869 RLG00000021046 RLG00000023109 RLG00000026629 RLG00000027568 RLG00000027741 RLG00000027989 RLG00000029466 RLG00000032523 RLG00000034953 RLG00000035012 RLG00000036930
rosa_multiflora	Rmu_sc0001298.1_g000014 Rmu_sc0010937.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236180 Rroxscaffold_4G00282370 Rroxscaffold_4G00287700 Rroxscaffold_5G00344480 Rroxscaffold_6G00420630
rosa_rugosa	Rorug04G0441100 Rorug07G0282000
rosa_samantha	Rh1AG357100 Rh1BG076300 Rh1BG240500 Rh1BG369300 Rh1CG024800 Rh1CG092500 Rh1DG099000 Rh1DG268800 Rh2AG264600 Rh2AG530800 Rh2AG530900 Rh2BG059300 Rh2BG494200 Rh2BG521900 Rh2BG545400 Rh2CG061100 Rh2CG515200 Rh2DG271900 Rh2DG503300 Rh2DG531800 Rh3AG105800 Rh3AG326600 Rh3BG110000 Rh3CG111500 Rh3DG111600 Rh4AG180600 Rh4CG191700 Rh4DG037400 Rh5AG112900 Rh5AG149800 Rh5AG470600 Rh5BG490300 Rh5BG551700 Rh5CG160600 Rh5CG514300 Rh5CG574500 Rh5DG108700 Rh5DG114200 Rh5DG148200 Rh5DG298500 Rh5DG416900 Rh6CG280200 Rh6CG397900 Rh6DG215700 Rh6DG231300 Rh6DG272800 Rh7CG104800 Rh7CG247000 Rh7DG211100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	95
AciI	CCGC	9 cut(s)	5, 93, 125, 137, 202, 330, 462, 606, 645
AclWI	GGATC	8 cut(s)	15, 84, 97, 164, 204, 215, 308, 310
AfeI	AGCGCT	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	4 cut(s)	103, 417, 626, 749
AluI	AGCT	4 cut(s)	103, 417, 626, 749
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	8 cut(s)	15, 84, 97, 164, 204, 215, 308, 310
AlwNI	CAGNNNCTG	1 cut(s)	626
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	5 cut(s)	126, 334, 582, 753, 779
AspLEI	GCGC	2 cut(s)	40, 50
AspS9I	GGNCC	4 cut(s)	582, 711, 754, 779
AsuHPI	GGTGA	5 cut(s)	122, 172, 179, 374, 422
AvaII	GGWCC	1 cut(s)	711
AxyI	CCTNAGG	1 cut(s)	678
BamHI	GGATCC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	517
BbvCI	CCTCAGC	1 cut(s)	51
BccI	CCATC	6 cut(s)	136, 227, 293, 325, 446, 770
BceAI	ACGGC	1 cut(s)	619
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	2 cut(s)	666, 699
BfmI	CTRYAG	2 cut(s)	325, 783
BfoI	RGCGCY	2 cut(s)	41, 51
BisI	GCNGC	2 cut(s)	126, 646
BlsI	GCNGC	2 cut(s)	127, 647
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	711
BmgT120I	GGNCC	4 cut(s)	582, 711, 754, 779
BmiI	GGNNCC	3 cut(s)	91, 583, 713
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	5 cut(s)	112, 155, 248, 261, 526
BpiI	GAAGAC	1 cut(s)	517
Bpu10I	CCTNAGC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	224, 438
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 324, 354
Bse1I	ACTGG	1 cut(s)	592
Bse21I	CCTNAGG	1 cut(s)	678
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	224, 438
BseGI	GGATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	2 cut(s)	421, 523
BseYI	CCCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	5 cut(s)	128, 336, 584, 755, 781
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	2 cut(s)	242, 631
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	2 cut(s)	242, 631
BsnI	GGCC	5 cut(s)	128, 336, 584, 755, 781
BspACI	CCGC	9 cut(s)	5, 93, 125, 137, 202, 330, 462, 606, 645
BspANI	GGCC	5 cut(s)	128, 336, 584, 755, 781
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	91, 583, 713
BspPI	GGATC	8 cut(s)	15, 84, 97, 164, 204, 215, 308, 310
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	2 cut(s)	224, 438
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	2 cut(s)	224, 438
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	110, 390
Bst6I	CTCTTC	2 cut(s)	32, 439
BstC8I	GCNNGC	5 cut(s)	135, 383, 628, 650, 654
BstDEI	CTNAG	3 cut(s)	51, 243, 678
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	2 cut(s)	41, 51
BstHHI	GCGC	2 cut(s)	40, 50
BstMAI	GTCTC	1 cut(s)	555
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 143
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	2 cut(s)	325, 783
BstUI	CGCG	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	517
BstX2I	RGATCY	4 cut(s)	7, 89, 220, 302
BstYI	RGATCY	4 cut(s)	7, 89, 220, 302
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	5 cut(s)	128, 336, 584, 755, 781
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	395, 585
Cac8I	GCNNGC	5 cut(s)	135, 383, 628, 650, 654
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	2 cut(s)	40, 50
Cfr13I	GGNCC	4 cut(s)	582, 711, 754, 779
CseI	GACGC	1 cut(s)	84
CviAII	CATG	2 cut(s)	631, 716
DdeI	CTNAG	3 cut(s)	51, 243, 678
Eam1104I	CTCTTC	2 cut(s)	32, 439
EarI	CTCTTC	2 cut(s)	32, 439
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	224, 438
Eco47I	GGWCC	1 cut(s)	711
Eco47III	AGCGCT	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	224, 438
ErhI	CCWWGG	2 cut(s)	224, 438
FaeI	CATG	2 cut(s)	634, 719
FaiI	YATR	8 cut(s)	327, 469, 600, 632, 636, 687, 717, 785
FaqI	GGGAC	2 cut(s)	242, 631
FatI	CATG	2 cut(s)	630, 715
FauI	CCCGC	2 cut(s)	130, 195
Fnu4HI	GCNGC	2 cut(s)	126, 646
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	126, 646
FspBI	CTAG	2 cut(s)	666, 699
GlaI	GCGC	2 cut(s)	39, 49
GluI	GCNGC	2 cut(s)	126, 646
GsaI	CCCAGC	1 cut(s)	44
HaeII	RGCGCY	2 cut(s)	41, 51
HaeIII	GGCC	5 cut(s)	128, 336, 584, 755, 781
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	2 cut(s)	40, 50
Hin1II	CATG	2 cut(s)	634, 719
Hin6I	GCGC	2 cut(s)	38, 48
HinP1I	GCGC	2 cut(s)	38, 48
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	2 cut(s)	398, 443
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	5 cut(s)	122, 172, 179, 374, 422
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	4 cut(s)	196, 215, 220, 451
Hpy188III	TCNNGA	3 cut(s)	189, 256, 311
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	1 cut(s)	767
HpyCH4III	ACNGT	2 cut(s)	110, 390
HpyCH4V	TGCA	6 cut(s)	118, 239, 385, 467, 719, 796
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 143
HpyF3I	CTNAG	3 cut(s)	51, 243, 678
Hsp92II	CATG	2 cut(s)	634, 719
HspAI	GCGC	2 cut(s)	38, 48
LweI	GCATC	5 cut(s)	112, 155, 248, 261, 526
MaeI	CTAG	2 cut(s)	666, 699
MaeIII	GTNAC	1 cut(s)	340
MboII	GAAGA	5 cut(s)	19, 418, 426, 438, 517
MflI	RGATCY	4 cut(s)	7, 89, 220, 302
MluCI	AATT	1 cut(s)	544
MmeI	TCCRAC	3 cut(s)	55, 67, 331
MseI	TTAA	3 cut(s)	261, 734, 741
MslI	CAYNNNNRTG	1 cut(s)	151
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	134, 143
NlaIII	CATG	2 cut(s)	634, 719
NlaIV	GGNNCC	3 cut(s)	91, 583, 713
NspI	RCATGY	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	398, 443
PkrI	GCNGC	2 cut(s)	127, 647
Psp6I	CCWGG	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	91, 583, 713
PspPI	GGNCC	4 cut(s)	582, 711, 754, 779
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	4 cut(s)	7, 89, 220, 302
RseI	CAYNNNNRTG	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	261, 734, 741
SatI	GCNGC	2 cut(s)	126, 646
Sau96I	GGNCC	4 cut(s)	582, 711, 754, 779
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	9 cut(s)	105, 342, 358, 412, 419, 616, 628, 671, 751
SfaNI	GCATC	5 cut(s)	112, 155, 248, 261, 526
SfcI	CTRYAG	2 cut(s)	325, 783
SinI	GGWCC	1 cut(s)	711
SmiMI	CAYNNNNRTG	1 cut(s)	151
Sse9I	AATT	1 cut(s)	544
SsiI	CCGC	9 cut(s)	5, 93, 125, 137, 202, 330, 462, 606, 645
SspMI	CTAG	2 cut(s)	666, 699
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	224, 438
TaaI	ACNGT	2 cut(s)	110, 390
TasI	AATT	1 cut(s)	544
TauI	GCSGC	2 cut(s)	128, 648
TfiI	GAWTC	2 cut(s)	398, 443
Tru1I	TTAA	3 cut(s)	261, 734, 741
Tru9I	TTAA	3 cut(s)	261, 734, 741
TscAI	CASTG	2 cut(s)	395, 592
TspDTI	ATGAA	2 cut(s)	651, 749
TspRI	CASTG	2 cut(s)	395, 592
VpaK11BI	GGWCC	1 cut(s)	711
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
XspI	CTAG	2 cut(s)	666, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.