RLG00000026629

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000576
Physical Location & Seq
Reverse (-)
4420664 .. 4422141
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026629

Sequence Viewer

Length: 903 bp
ATGTTGGTGATGGCATATTTTGGTCTGCTTATCCTCTTCTTGATTGCGTTGGGGGACGTTGAGGTTATGTTGAGTTCAGGGGTTAGAGGTGATGTTGTTTCTGCACCAAAGCCTGATGGTGAAGTGAAAGATGCAGCCTTGTGGGTGGGGATGGCATCTAGATGGCAGATGAGCAGCGATCCGGTGTCGATCTTTGGCGTGCTGGTGATCTTGCTGTCACGGACGGTGATGGTATGCTGGTTTGCTCGGACGTACTCAGGGACTACTGCTTCTGATGGTGGTGCTCATGCGTATAACGGCTGCAAGTATGGAGGCAGAGGCGGCTGTCAAATCACACTGGGGTTGTCGGAGATGAGGGAGGATCTGCTTTCCTCGGGCTCGAGCCTTTCGTTGGCAGGGTTGATGTGCAGTGACAAGTTCTACAACGTCGGTGGCGGCGGTGGCTTGCTGGTTGGCGGCGACGGTGCTCTGGTCCGATGGGGTGGAACCTGTGGGGTGCCCTTACTCTCAGCCTCGACCTTTTCCCTTTCGTTTTCCTCTTCATGGATTCACCACTATCGAAGCCCGGACCTTCTGCAGCCATCAATTCCGAAGACACAAAGACAGGAACTGACGAAGCCTCCCGAACCTGAAGTCAGCAGCTTTCCATCTTTCAGTCTATCTCTTAAAGGTAACTTTAATTCCGCCTCCGTCTTTGATTTTCACCGATCTGAGATTCTAATTTTCCCGATTCATATTTCGTCTTTGAAGATGACTCGGTGTTCTTTTCTCCTCCATAGCCAAGGTCCAGATCAATGGCCAAGGTCTAGATCGGGTGATGTAATTGTTTCCATCAACACTCTTCTTTGGGTTATTGGGTTTCGTTTGAAATCCGAGTATGGTGCCCTGGTGGTTGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

32.27

Weight (kDa)

7.0

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 496, 881
AciI CCGC 5 cut(s) 321, 435, 438, 456, 684
AclWI GGATC 2 cut(s) 173, 369
AcoI YGGCCR 1 cut(s) 797
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 391, 543
AgsI TTSAA 3 cut(s) 748, 868, 896
AjnI CCWGG 1 cut(s) 885
AluBI AGCT 1 cut(s) 642
AluI AGCT 1 cut(s) 642
Alw21I GWGCWC 2 cut(s) 286, 469
AlwI GGATC 2 cut(s) 173, 369
AlwNI CAGNNNCTG 1 cut(s) 610
Ama87I CYCGRG 2 cut(s) 373, 379
AoxI GGCC 1 cut(s) 797
ApeKI GCWGC 5 cut(s) 134, 174, 300, 577, 639
ArsI GACNNNNNNTTYG 2 cut(s) 618, 650
AspS9I GGNCC 3 cut(s) 472, 568, 785
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 8 cut(s) 19, 101, 131, 217, 238, 542, 695, 827
AvaI CYCGRG 2 cut(s) 373, 379
AvaII GGWCC 3 cut(s) 472, 568, 785
BaeGI GKGCMC 2 cut(s) 501, 886
BalI TGGCCA 1 cut(s) 799
BanI GGYRCC 2 cut(s) 496, 881
BanII GRGCYC 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 599
Bbv12I GWGCWC 2 cut(s) 286, 469
BbvI GCAGC 5 cut(s) 146, 186, 287, 589, 651
BceAI ACGGC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 863, 897
BciT130I CCWGG 1 cut(s) 887
BcnI CCSGG 1 cut(s) 566
BfaI CTAG 2 cut(s) 159, 807
BfmI CTRYAG 1 cut(s) 575
BisI GCNGC 8 cut(s) 135, 175, 301, 322, 436, 457, 578, 640
BlsI GCNGC 8 cut(s) 136, 176, 302, 323, 437, 458, 579, 641
Bme1390I CCNGG 2 cut(s) 566, 887
Bme18I GGWCC 3 cut(s) 472, 568, 785
BmeT110I CYCGRG 2 cut(s) 373, 379
BmgT120I GGNCC 3 cut(s) 472, 568, 785
BmiI GGNNCC 3 cut(s) 487, 498, 883
BmrFI CCNGG 2 cut(s) 566, 887
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 2 cut(s) 121, 164
BmuI ACTGGG 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 599
BpuMI CCSGG 1 cut(s) 566
BsaJI CCNNGG 4 cut(s) 372, 781, 800, 885
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 543
Bse1I ACTGG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 887
BseDI CCNNGG 4 cut(s) 372, 781, 800, 885
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 391, 543
BseMII CTCAG 3 cut(s) 270, 522, 702
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 761
BseSI GKGCMC 2 cut(s) 501, 886
BseXI GCAGC 5 cut(s) 146, 186, 287, 589, 651
BsgI GTGCAG 2 cut(s) 87, 427
BshFI GGCC 1 cut(s) 799
BshNI GGYRCC 2 cut(s) 496, 881
BsiHKAI GWGCWC 2 cut(s) 286, 469
BsiHKCI CYCGRG 2 cut(s) 373, 379
BsiSI CCGG 2 cut(s) 182, 566
BslFI GGGAC 2 cut(s) 68, 274
BslI CCNNNNNNNGG 2 cut(s) 391, 543
BsmFI GGGAC 2 cut(s) 68, 274
BsnI GGCC 1 cut(s) 799
BsoBI CYCGRG 2 cut(s) 373, 379
Bsp1286I GDGCHC 5 cut(s) 286, 380, 469, 501, 886
Bsp143I GATC 7 cut(s) 178, 189, 207, 361, 707, 790, 809
BspACI CCGC 5 cut(s) 321, 435, 438, 456, 684
BspANI GGCC 1 cut(s) 799
BspCNI CTCAG 3 cut(s) 269, 521, 703
BspLI GGNNCC 3 cut(s) 487, 498, 883
BspMAI CTGCAG 1 cut(s) 579
BspPI GGATC 2 cut(s) 173, 369
BspT107I GGYRCC 2 cut(s) 496, 881
BsrI ACTGG 1 cut(s) 342
BssECI CCNNGG 4 cut(s) 372, 781, 800, 885
BssMI GATC 7 cut(s) 178, 189, 207, 361, 707, 790, 809
BssT1I CCWWGG 2 cut(s) 781, 800
Bst2UI CCWGG 1 cut(s) 887
Bst4CI ACNGT 2 cut(s) 226, 464
Bst6I CTCTTC 3 cut(s) 41, 544, 846
BstC8I GCNNGC 2 cut(s) 200, 446
BstDEI CTNAG 3 cut(s) 256, 508, 711
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 7 cut(s) 181, 192, 210, 364, 710, 793, 812
BstMBI GATC 7 cut(s) 178, 189, 207, 361, 707, 790, 809
BstMWI GCNNNNNNNGC 2 cut(s) 321, 441
BstNI CCWGG 1 cut(s) 887
BstSCI CCNGG 2 cut(s) 564, 885
BstSFI CTRYAG 1 cut(s) 575
BstSLI GKGCMC 2 cut(s) 501, 886
BstV1I GCAGC 5 cut(s) 146, 186, 287, 589, 651
BstV2I GAAGAC 1 cut(s) 599
BstX2I RGATCY 1 cut(s) 361
BstXI CCANNNNNNTGG 1 cut(s) 795
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 1 cut(s) 799
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 415
BtsIMutI CAGTG 2 cut(s) 335, 415
Cac8I GCNNGC 2 cut(s) 200, 446
CaiI CAGNNNCTG 1 cut(s) 610
Cfr13I GGNCC 3 cut(s) 472, 568, 785
Csp6I GTAC 1 cut(s) 253
CspCI CAANNNNNGTGG 2 cut(s) 412, 447
CviAII CATG 2 cut(s) 287, 543
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 3 cut(s) 256, 508, 711
DpnI GATC 7 cut(s) 180, 191, 209, 363, 709, 792, 811
DpnII GATC 7 cut(s) 178, 189, 207, 361, 707, 790, 809
EaeI YGGCCR 1 cut(s) 797
Eam1104I CTCTTC 3 cut(s) 41, 544, 846
EarI CTCTTC 3 cut(s) 41, 544, 846
EciI GGCGGA 1 cut(s) 673
Eco130I CCWWGG 2 cut(s) 781, 800
Eco24I GRGCYC 1 cut(s) 380
Eco47I GGWCC 3 cut(s) 472, 568, 785
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 2 cut(s) 373, 379
EcoRII CCWGG 1 cut(s) 885
EcoT14I CCWWGG 2 cut(s) 781, 800
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 2 cut(s) 781, 800
FaeI CATG 2 cut(s) 290, 546
FaqI GGGAC 2 cut(s) 68, 274
FatI CATG 2 cut(s) 286, 542
Fnu4HI GCNGC 8 cut(s) 135, 175, 301, 322, 436, 457, 578, 640
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 8 cut(s) 135, 175, 301, 322, 436, 457, 578, 640
FspBI CTAG 2 cut(s) 159, 807
GluI GCNGC 8 cut(s) 135, 175, 301, 322, 436, 457, 578, 640
HaeIII GGCC 1 cut(s) 799
HapII CCGG 2 cut(s) 182, 566
Hin1II CATG 2 cut(s) 290, 546
HinfI GANTC 4 cut(s) 547, 715, 730, 754
HpaII CCGG 2 cut(s) 182, 566
HphI GGTGA 8 cut(s) 19, 101, 131, 217, 238, 542, 695, 827
Hpy188I TCNGA 7 cut(s) 249, 274, 349, 476, 591, 712, 874
Hpy188III TCNNGA 6 cut(s) 40, 159, 623, 727, 788, 807
Hpy99I CGWCG 2 cut(s) 431, 464
HpyAV CCTTC 1 cut(s) 581
HpyCH4III ACNGT 2 cut(s) 226, 464
HpyCH4IV ACGT 3 cut(s) 57, 251, 426
HpyCH4V TGCA 5 cut(s) 104, 134, 303, 408, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 441
HpyF3I CTNAG 3 cut(s) 256, 508, 711
HpySE526I ACGT 3 cut(s) 57, 251, 426
Hsp92II CATG 2 cut(s) 290, 546
Kzo9I GATC 7 cut(s) 178, 189, 207, 361, 707, 790, 809
Lsp1109I GCAGC 5 cut(s) 146, 186, 287, 589, 651
LweI GCATC 2 cut(s) 121, 164
MaeI CTAG 2 cut(s) 159, 807
MaeII ACGT 3 cut(s) 57, 251, 426
MaeIII GTNAC 3 cut(s) 216, 410, 671
MalI GATC 7 cut(s) 180, 191, 209, 363, 709, 792, 811
MboI GATC 7 cut(s) 178, 189, 207, 361, 707, 790, 809
MboII GAAGA 5 cut(s) 28, 531, 604, 760, 833
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 5 cut(s) 286, 380, 469, 501, 886
MlsI TGGCCA 1 cut(s) 799
MluCI AATT 4 cut(s) 585, 679, 720, 822
MluNI TGGCCA 1 cut(s) 799
MlyI GAGTC 1 cut(s) 748
MmeI TCCRAC 1 cut(s) 327
Mox20I TGGCCA 1 cut(s) 799
MscI TGGCCA 1 cut(s) 799
MseI TTAA 2 cut(s) 666, 678
MslI CAYNNNNRTG 1 cut(s) 160
Msp20I TGGCCA 1 cut(s) 799
MspI CCGG 2 cut(s) 182, 566
MspR9I CCNGG 2 cut(s) 566, 887
MvaI CCWGG 1 cut(s) 887
MwoI GCNNNNNNNGC 2 cut(s) 321, 441
NciI CCSGG 1 cut(s) 566
NdeII GATC 7 cut(s) 178, 189, 207, 361, 707, 790, 809
NlaIII CATG 2 cut(s) 290, 546
NlaIV GGNNCC 3 cut(s) 487, 498, 883
NmuCI GTSAC 2 cut(s) 216, 410
PaeR7I CTCGAG 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PfeI GAWTC 3 cut(s) 547, 715, 730
PkrI GCNGC 8 cut(s) 136, 176, 302, 323, 437, 458, 579, 641
PleI GAGTC 1 cut(s) 748
PpsI GAGTC 1 cut(s) 748
Psp6I CCWGG 1 cut(s) 885
PspGI CCWGG 1 cut(s) 885
PspN4I GGNNCC 3 cut(s) 487, 498, 883
PspPI GGNCC 3 cut(s) 472, 568, 785
PspXI VCTCGAGB 1 cut(s) 379
PstI CTGCAG 1 cut(s) 579
PstNI CAGNNNCTG 1 cut(s) 610
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 2 cut(s) 666, 678
SatI GCNGC 8 cut(s) 135, 175, 301, 322, 436, 457, 578, 640
Sau3AI GATC 7 cut(s) 178, 189, 207, 361, 707, 790, 809
Sau96I GGNCC 3 cut(s) 472, 568, 785
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 2 cut(s) 566, 887
SduI GDGCHC 5 cut(s) 286, 380, 469, 501, 886
SfaNI GCATC 2 cut(s) 121, 164
SfcI CTRYAG 1 cut(s) 575
Sfr274I CTCGAG 1 cut(s) 379
SinI GGWCC 3 cut(s) 472, 568, 785
SlaI CTCGAG 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 4 cut(s) 585, 679, 720, 822
SsiI CCGC 5 cut(s) 321, 435, 438, 456, 684
SspMI CTAG 2 cut(s) 159, 807
StyD4I CCNGG 2 cut(s) 564, 885
StyI CCWWGG 2 cut(s) 781, 800
TaaI ACNGT 2 cut(s) 226, 464
TaiI ACGT 3 cut(s) 60, 254, 429
TaqI TCGA 4 cut(s) 188, 380, 515, 559
TasI AATT 4 cut(s) 585, 679, 720, 822
TauI GCSGC 3 cut(s) 324, 438, 459
TfiI GAWTC 3 cut(s) 547, 715, 730
Tru1I TTAA 2 cut(s) 666, 678
Tru9I TTAA 2 cut(s) 666, 678
TscAI CASTG 2 cut(s) 342, 415
TseFI GTSAC 2 cut(s) 216, 410
TseI GCWGC 5 cut(s) 134, 174, 300, 577, 639
Tsp45I GTSAC 2 cut(s) 216, 410
TspDTI ATGAA 2 cut(s) 531, 722
TspGWI ACGGA 2 cut(s) 235, 679
TspRI CASTG 2 cut(s) 342, 415
VpaK11BI GGWCC 3 cut(s) 472, 568, 785
XbaI TCTAGA 2 cut(s) 158, 806
XhoI CTCGAG 1 cut(s) 379
XspI CTAG 2 cut(s) 159, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.