RLG00000014857

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000576
Physical Location & Seq
Forward (+)
58619645 .. 58620301
657 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014857

Sequence Viewer

Length: 561 bp
ATGCAATCTCATAGGAAGGGATGGCATCTAGATGGCAGTGTTGATCTGTGGCATGCCGGCGATCTTACTGTCCAGGATGGTGACAGAGTGCTGGCTTGCTCAAACCCAGGGACTATTGTTTCTGATGGTGGTGCTCATGGATCTAAAGACTGCAAGTATGGAGGCAAGAGCGGCTGTCGAAACCAACCGGGGTTACTGGAGATGAGGGCGGATCTGCTTACCCCCAGCCCAGGCACTCCAGTGGTAGGGAAGATGGTATGGCTCTGCTCTTCAAAGAAGATTACCTTTGATGGTGATGCTGCTTGGTGCAGCGATGGGCTTTACCACGTAGGTGGTGGCGGTGGCTTGTTGGTTGGTGGCGACGGTGTGCCAGTCCGATGGGGTGGATTTTGTGGGGTGCCCTTAGCAATTTCTGCTTGGGCCCTCTGTGGTTCACTCTGTTTTGTGGGCTCTACGCAAGGCTGTGTTTGGGTGGATTGCGCATTTTGTTTTAGGATTTGGGCTACCTTTGTTAAGGGAGTGGATGGTGATCCGTCACCTTTCACTCTTATTATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

19.42

Weight (kDa)

6.15

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 397
AccBSI CCGCTC 1 cut(s) 171
AciI CCGC 3 cut(s) 171, 209, 339
AclWI GGATC 3 cut(s) 148, 219, 524
AfiI CCNNNNNNNGG 2 cut(s) 230, 245
AgsI TTSAA 1 cut(s) 273
AjnI CCWGG 3 cut(s) 72, 106, 229
AleI CACNNNNGTG 2 cut(s) 239, 330
Alw21I GWGCWC 1 cut(s) 136
AlwI GGATC 3 cut(s) 148, 219, 524
AoxI GGCC 1 cut(s) 420
ApaI GGGCCC 1 cut(s) 424
ApeKI GCWGC 2 cut(s) 299, 309
AspLEI GCGC 1 cut(s) 482
AspS9I GGNCC 2 cut(s) 420, 421
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 4 cut(s) 92, 305, 528, 539
BaeGI GKGCMC 2 cut(s) 402, 424
BanI GGYRCC 1 cut(s) 397
BanII GRGCYC 2 cut(s) 424, 452
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 286, 321
BccI CCATC 9 cut(s) 15, 26, 71, 119, 247, 284, 308, 372, 518
BciT130I CCWGG 3 cut(s) 74, 108, 231
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 29
BisI GCNGC 3 cut(s) 172, 300, 310
BlsI GCNGC 3 cut(s) 173, 301, 311
Bme1390I CCNGG 4 cut(s) 74, 108, 189, 231
BmgT120I GGNCC 2 cut(s) 420, 421
BmiI GGNNCC 2 cut(s) 399, 422
BmrFI CCNGG 4 cut(s) 74, 108, 189, 231
BmsI GCATC 2 cut(s) 34, 286
BpmI CTGGAG 2 cut(s) 218, 222
Bpu10I CCTNAGC 1 cut(s) 403
BpuMI CCSGG 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 4 cut(s) 106, 107, 188, 229
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 245
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 3 cut(s) 201, 239, 371
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 3 cut(s) 74, 108, 231
BseDI CCNNGG 4 cut(s) 106, 107, 188, 229
BseGI GGATG 3 cut(s) 26, 82, 529
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 2 cut(s) 230, 245
BseNI ACTGG 3 cut(s) 201, 239, 371
BseSI GKGCMC 2 cut(s) 402, 424
BseXI GCAGC 2 cut(s) 286, 321
BseYI CCCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 328
BshFI GGCC 1 cut(s) 422
BshNI GGYRCC 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 2 cut(s) 57, 188
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 230, 245
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 1 cut(s) 422
Bsp120I GGGCCC 1 cut(s) 420
Bsp1286I GDGCHC 4 cut(s) 136, 402, 424, 452
Bsp143I GATC 5 cut(s) 43, 61, 140, 211, 529
BspACI CCGC 3 cut(s) 171, 209, 339
BspANI GGCC 1 cut(s) 422
BspLI GGNNCC 2 cut(s) 399, 422
BspPI GGATC 3 cut(s) 148, 219, 524
BspQI GCTCTTC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 397
BsrBI CCGCTC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 3 cut(s) 201, 239, 371
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 4 cut(s) 106, 107, 188, 229
BssMI GATC 5 cut(s) 43, 61, 140, 211, 529
Bst2UI CCWGG 3 cut(s) 74, 108, 231
Bst4CI ACNGT 2 cut(s) 70, 365
Bst6I CTCTTC 1 cut(s) 274
BstAPI GCANNNNNTGC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 4 cut(s) 54, 58, 93, 97
BstDEI CTNAG 1 cut(s) 403
BstF5I GGATG 3 cut(s) 26, 82, 529
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 5 cut(s) 46, 64, 143, 214, 532
BstMBI GATC 5 cut(s) 43, 61, 140, 211, 529
BstMWI GCNNNNNNNGC 2 cut(s) 171, 413
BstNI CCWGG 3 cut(s) 74, 108, 231
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 4 cut(s) 72, 106, 187, 229
BstSLI GKGCMC 2 cut(s) 402, 424
BstV1I GCAGC 2 cut(s) 286, 321
BstX2I RGATCY 2 cut(s) 140, 211
BstXI CCANNNNNNTGG 2 cut(s) 332, 378
BstYI RGATCY 2 cut(s) 140, 211
BsuRI GGCC 1 cut(s) 422
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 3 cut(s) 26, 82, 529
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 246
Cac8I GCNNGC 4 cut(s) 54, 58, 93, 97
CfoI GCGC 1 cut(s) 482
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 420, 421
CviAII CATG 2 cut(s) 53, 137
DdeI CTNAG 1 cut(s) 403
DpnI GATC 5 cut(s) 45, 63, 142, 213, 531
DpnII GATC 5 cut(s) 43, 61, 140, 211, 529
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
EciI GGCGGA 1 cut(s) 224
Eco24I GRGCYC 2 cut(s) 424, 452
EcoO109I RGGNCCY 1 cut(s) 421
EcoRII CCWGG 3 cut(s) 72, 106, 229
EcoT38I GRGCYC 2 cut(s) 424, 452
FaeI CATG 2 cut(s) 56, 140
FaiI YATR 5 cut(s) 12, 54, 138, 159, 259
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 124
FatI CATG 2 cut(s) 52, 136
Fnu4HI GCNGC 3 cut(s) 172, 300, 310
FokI GGATG 3 cut(s) 33, 89, 536
FriOI GRGCYC 2 cut(s) 424, 452
Fsp4HI GCNGC 3 cut(s) 172, 300, 310
FspBI CTAG 1 cut(s) 29
FspI TGCGCA 1 cut(s) 481
GlaI GCGC 1 cut(s) 481
GluI GCNGC 3 cut(s) 172, 300, 310
GsaI CCCAGC 1 cut(s) 228
GsuI CTGGAG 2 cut(s) 218, 222
HaeIII GGCC 1 cut(s) 422
HapII CCGG 2 cut(s) 57, 188
HhaI GCGC 1 cut(s) 482
Hin1II CATG 2 cut(s) 56, 140
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HpaII CCGG 2 cut(s) 57, 188
HphI GGTGA 4 cut(s) 92, 305, 528, 539
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 2 cut(s) 124, 377
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 434
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 2 cut(s) 70, 365
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 3 cut(s) 4, 153, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 413
HpyF3I CTNAG 1 cut(s) 403
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 2 cut(s) 56, 140
HspAI GCGC 1 cut(s) 480
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Kzo9I GATC 5 cut(s) 43, 61, 140, 211, 529
LguI GCTCTTC 1 cut(s) 274
Lsp1109I GCAGC 2 cut(s) 286, 321
LweI GCATC 2 cut(s) 34, 286
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 3 cut(s) 80, 192, 534
MalI GATC 5 cut(s) 45, 63, 142, 213, 531
MbiI CCGCTC 1 cut(s) 171
MboI GATC 5 cut(s) 43, 61, 140, 211, 529
MboII GAAGA 3 cut(s) 261, 262, 289
MflI RGATCY 2 cut(s) 140, 211
MhlI GDGCHC 4 cut(s) 136, 402, 424, 452
MluCI AATT 1 cut(s) 408
MnlI CCTC 3 cut(s) 155, 198, 434
MroNI GCCGGC 1 cut(s) 56
MseI TTAA 2 cut(s) 513, 559
MslI CAYNNNNRTG 3 cut(s) 30, 239, 330
MspI CCGG 2 cut(s) 57, 188
MspR9I CCNGG 4 cut(s) 74, 108, 189, 231
MvaI CCWGG 3 cut(s) 74, 108, 231
MwoI GCNNNNNNNGC 2 cut(s) 171, 413
NaeI GCCGGC 1 cut(s) 58
NciI CCSGG 1 cut(s) 189
NdeII GATC 5 cut(s) 43, 61, 140, 211, 529
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 2 cut(s) 56, 140
NlaIV GGNNCC 2 cut(s) 399, 422
NmuCI GTSAC 2 cut(s) 80, 534
NsbI TGCGCA 1 cut(s) 481
NspI RCATGY 1 cut(s) 56
OliI CACNNNNGTG 2 cut(s) 239, 330
PaeI GCATGC 1 cut(s) 56
PasI CCCWGGG 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 274
PdiI GCCGGC 1 cut(s) 58
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 3 cut(s) 173, 301, 311
Ppu21I YACGTR 1 cut(s) 328
Psp6I CCWGG 3 cut(s) 72, 106, 229
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 3 cut(s) 72, 106, 229
PspN4I GGNNCC 2 cut(s) 399, 422
PspOMI GGGCCC 1 cut(s) 420
PspPI GGNCC 2 cut(s) 420, 421
PsuI RGATCY 2 cut(s) 140, 211
RseI CAYNNNNRTG 3 cut(s) 30, 239, 330
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 2 cut(s) 513, 559
SatI GCNGC 3 cut(s) 172, 300, 310
Sau3AI GATC 5 cut(s) 43, 61, 140, 211, 529
Sau96I GGNCC 2 cut(s) 420, 421
ScrFI CCNGG 4 cut(s) 74, 108, 189, 231
SduI GDGCHC 4 cut(s) 136, 402, 424, 452
SetI ASST 5 cut(s) 287, 330, 334, 509, 541
SfaNI GCATC 2 cut(s) 34, 286
SmiMI CAYNNNNRTG 3 cut(s) 30, 239, 330
SphI GCATGC 1 cut(s) 56
Sse9I AATT 1 cut(s) 408
SsiI CCGC 3 cut(s) 171, 209, 339
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 4 cut(s) 72, 106, 187, 229
TaaI ACNGT 2 cut(s) 70, 365
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 408
TauI GCSGC 1 cut(s) 174
Tru1I TTAA 2 cut(s) 513, 559
Tru9I TTAA 2 cut(s) 513, 559
TscAI CASTG 2 cut(s) 43, 246
TseFI GTSAC 2 cut(s) 80, 534
TseI GCWGC 2 cut(s) 299, 309
Tsp45I GTSAC 2 cut(s) 80, 534
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 2 cut(s) 43, 246
XbaI TCTAGA 1 cut(s) 28
XceI RCATGY 1 cut(s) 56
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.