Rroxscaffold_6G00420630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000576
Physical Location & Seq
Reverse (-)
41802273 .. 41803558
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420630.1

Sequence Viewer

Length: 276 bp
ATGGCAGATCTTGGTGCGCTTATTCTCTTCCTCGTGGCCACAGGTAGCGATGAGACTATGTTGGTGTCGGGGGTTGGGGGCGTTGTTGGATCCATGTCCAAGCTCGAGGGTGAAGTGCAAGATGCGGCCTCGTTTGCGGGGATGGCATCTAGGTGGCGAGTGAGTGGTGATCCGGTCTTGGTTTGGTCAAGATCGGATCGGAAGAAGGAAGAACACACGGCCGGAGGGTACAGAATGAAGAGCTCTAGAATTGGACAAGTTTGGTGGAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.82

Weight (kDa)

6.58

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 125, 137
AclWI GGATC 4 cut(s) 84, 97, 164, 204
AcoI YGGCCR 2 cut(s) 36, 219
AfaI GTAC 1 cut(s) 230
AluBI AGCT 2 cut(s) 103, 243
AluI AGCT 2 cut(s) 103, 243
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 4 cut(s) 84, 97, 164, 204
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 3 cut(s) 36, 126, 219
AspLEI GCGC 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 122, 179
AvaI CYCGRG 1 cut(s) 104
BalI TGGCCA 1 cut(s) 38
BamHI GGATCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 245
BauI CACGAG 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 245
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 2 cut(s) 150, 246
BglII AGATCT 1 cut(s) 7
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 91
BmsI GCATC 2 cut(s) 112, 155
BsaWI WCCGGW 1 cut(s) 172
BseGI GGATG 1 cut(s) 147
BseX3I CGGCCG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 3 cut(s) 38, 128, 221
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 2 cut(s) 173, 222
BsmAI GTCTC 1 cut(s) 47
BsnI GGCC 3 cut(s) 38, 128, 221
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 5 cut(s) 7, 89, 169, 191, 196
BspACI CCGC 2 cut(s) 125, 137
BspANI GGCC 3 cut(s) 38, 128, 221
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 4 cut(s) 84, 97, 164, 204
BspQI GCTCTTC 1 cut(s) 233
BssMI GATC 5 cut(s) 7, 89, 169, 191, 196
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst6I CTCTTC 2 cut(s) 32, 233
BstF5I GGATG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 5 cut(s) 10, 92, 172, 194, 199
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 5 cut(s) 7, 89, 169, 191, 196
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstX2I RGATCY 2 cut(s) 7, 89
BstYI RGATCY 2 cut(s) 7, 89
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 3 cut(s) 38, 128, 221
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 147
CfoI GCGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 229
CspCI CAANNNNNGTGG 1 cut(s) 245
CviAII CATG 1 cut(s) 94
CviJI RGCY 5 cut(s) 38, 103, 128, 221, 243
CviKI_1 RGCY 5 cut(s) 38, 103, 128, 221, 243
CviQI GTAC 1 cut(s) 229
DpnI GATC 5 cut(s) 9, 91, 171, 193, 198
DpnII GATC 5 cut(s) 7, 89, 169, 191, 196
EaeI YGGCCR 2 cut(s) 36, 219
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 32, 233
EarI CTCTTC 2 cut(s) 32, 233
Ecl136II GAGCTC 1 cut(s) 243
EclXI CGGCCG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 245
Eco52I CGGCCG 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 59, 95
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 2 cut(s) 150, 246
GlaI GCGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 3 cut(s) 38, 128, 221
HapII CCGG 2 cut(s) 173, 222
HhaI GCGC 1 cut(s) 19
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HpaII CCGG 2 cut(s) 173, 222
HphI GGTGA 2 cut(s) 122, 179
Hpy188I TCNGA 2 cut(s) 196, 201
Hpy188III TCNNGA 2 cut(s) 189, 246
HpyAV CCTTC 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 5 cut(s) 7, 89, 169, 191, 196
LguI GCTCTTC 1 cut(s) 233
LpnPI CCDG 3 cut(s) 27, 186, 235
LweI GCATC 2 cut(s) 112, 155
MaeI CTAG 2 cut(s) 150, 246
MalI GATC 5 cut(s) 9, 91, 171, 193, 198
MboI GATC 5 cut(s) 7, 89, 169, 191, 196
MboII GAAGA 4 cut(s) 19, 214, 221, 250
MflI RGATCY 2 cut(s) 7, 89
MhlI GDGCHC 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 1 cut(s) 249
MluNI TGGCCA 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 4 cut(s) 41, 100, 139, 218
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 151
Msp20I TGGCCA 1 cut(s) 38
MspI CCGG 2 cut(s) 173, 222
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NdeII GATC 5 cut(s) 7, 89, 169, 191, 196
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 91
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 2 cut(s) 7, 89
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 151
SacI GAGCTC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 233
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 5 cut(s) 7, 89, 169, 191, 196
SduI GDGCHC 1 cut(s) 245
SetI ASST 4 cut(s) 46, 105, 155, 245
SfaNI GCATC 2 cut(s) 112, 155
Sfr274I CTCGAG 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 249
SsiI CCGC 2 cut(s) 125, 137
SspMI CTAG 2 cut(s) 150, 246
SstI GAGCTC 1 cut(s) 245
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 249
TauI GCSGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 251
XbaI TCTAGA 1 cut(s) 245
XhoI CTCGAG 1 cut(s) 104
XspI CTAG 2 cut(s) 150, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.