Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000576

Physical Location & Seq

Genomic Coordinates Reverse (-)

14644986 .. 14646739

Gene Structure 1754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027741

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCAAATTTTGGTTTGCTTATTCTCTTCCTCGTTGTGCTGGGTAGCGCTGAGGCTGTGTTGGTGTCGGGGGTTGGGGGCGCTGCTAGATCCGCGTCCAAGCTCGACGGTGAAGTGCAAGTTGTGGCCTCGTTTGCGGGGATGGCATCTAGGTGGTGGATGAGTGGTGATCCGGTCTTCGGGACTGTTGCTTTGGATGGCGGTGCTCTTGGGTATAGTGGCTGCAAGTGTGGTGGCAAGGACGGCTGTCAAATTTTGTCGACTTCCGAAGGTCGTGATGACGATGAGCATGATGGTGCAAATCATGCTGCACAAGCGGGGCGATGTGGATCATGCGGCGCAGGTGTGGCGGCGTGGTCGGACCAGCATGGTTATGGCGTCCTCGATCGATCCAAAGTGATGAGGCGGCTGTGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

14.11

Weight (kDa)

5.47

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496101
rosa_laevigata	RLG00000001000 RLG00000003686 RLG00000004631 RLG00000004905 RLG00000005430 RLG00000005713 RLG00000007389 RLG00000011894 RLG00000014857 RLG00000017726 RLG00000020028 RLG00000020869 RLG00000021046 RLG00000023109 RLG00000026629 RLG00000027568 RLG00000027741 RLG00000027989 RLG00000029466 RLG00000032523 RLG00000034953 RLG00000035012 RLG00000036930
rosa_multiflora	Rmu_sc0001298.1_g000014 Rmu_sc0010937.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236180 Rroxscaffold_4G00282370 Rroxscaffold_4G00287700 Rroxscaffold_5G00344480 Rroxscaffold_6G00420630
rosa_rugosa	Rorug04G0441100 Rorug07G0282000
rosa_samantha	Rh1AG357100 Rh1BG076300 Rh1BG240500 Rh1BG369300 Rh1CG024800 Rh1CG092500 Rh1DG099000 Rh1DG268800 Rh2AG264600 Rh2AG530800 Rh2AG530900 Rh2BG059300 Rh2BG494200 Rh2BG521900 Rh2BG545400 Rh2CG061100 Rh2CG515200 Rh2DG271900 Rh2DG503300 Rh2DG531800 Rh3AG105800 Rh3AG326600 Rh3BG110000 Rh3CG111500 Rh3DG111600 Rh4AG180600 Rh4CG191700 Rh4DG037400 Rh5AG112900 Rh5AG149800 Rh5AG470600 Rh5BG490300 Rh5BG551700 Rh5CG160600 Rh5CG514300 Rh5CG574500 Rh5DG108700 Rh5DG114200 Rh5DG148200 Rh5DG298500 Rh5DG416900 Rh6CG280200 Rh6CG397900 Rh6DG215700 Rh6DG231300 Rh6DG272800 Rh7CG104800 Rh7CG247000 Rh7DG211100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	1 cut(s)	95
AciI	CCGC	7 cut(s)	93, 137, 201, 317, 336, 350, 406
AclWI	GGATC	4 cut(s)	84, 164, 337, 384
AcsI	RAATTY	2 cut(s)	7, 252
AcyI	GRCGYC	1 cut(s)	378
AfeI	AGCGCT	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	179
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	4 cut(s)	84, 164, 337, 384
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	83, 222, 308
ApoI	RAATTY	2 cut(s)	7, 252
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
AspLEI	GCGC	3 cut(s)	50, 83, 341
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	122, 179
AvaII	GGWCC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	208
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	70, 209, 295
BccI	CCATC	3 cut(s)	136, 191, 287
BceAI	ACGGC	1 cut(s)	259
BfaI	CTAG	2 cut(s)	87, 150
BfoI	RGCGCY	2 cut(s)	51, 84
BfuAI	ACCTGC	1 cut(s)	332
BisI	GCNGC	6 cut(s)	84, 223, 309, 337, 351, 407
BlsI	GCNGC	6 cut(s)	85, 224, 310, 338, 352, 408
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmsI	GCATC	1 cut(s)	155
BoxI	GACNNNNGTC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	51
Bsa29I	ATCGAT	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	388
BseGI	GGATG	3 cut(s)	147, 165, 202
BseJI	GATNNNNATC	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	70, 209, 295
BseYI	CCCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	388
BsiEI	CGRYCG	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	5 cut(s)	89, 169, 329, 385, 389
BspACI	CCGC	7 cut(s)	93, 137, 201, 317, 336, 350, 406
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	4 cut(s)	84, 164, 337, 384
BssMI	GATC	5 cut(s)	89, 169, 329, 385, 389
BssNI	GRCGYC	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	110, 187
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	378
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	147, 165, 202
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	2 cut(s)	51, 84
BstHHI	GCGC	3 cut(s)	50, 83, 341
BstKTI	GATC	5 cut(s)	92, 172, 332, 388, 392
BstMBI	GATC	5 cut(s)	89, 169, 329, 385, 389
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 134, 143, 243, 305, 314, 347
BstPAI	GACNNNNGTC	1 cut(s)	246
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	70, 209, 295
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	128
BsuTUI	ATCGAT	1 cut(s)	388
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	147, 165, 202
BveI	ACCTGC	1 cut(s)	332
CfoI	GCGC	3 cut(s)	50, 83, 341
Cfr13I	GGNCC	1 cut(s)	361
ClaI	ATCGAT	1 cut(s)	388
CseI	GACGC	2 cut(s)	84, 367
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	4 cut(s)	290, 305, 333, 368
CviJI	RGCY	6 cut(s)	56, 103, 128, 222, 246, 409
CviKI_1	RGCY	6 cut(s)	56, 103, 128, 222, 246, 409
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	5 cut(s)	91, 171, 331, 387, 391
DpnII	GATC	5 cut(s)	89, 169, 329, 385, 389
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	361
Eco47III	AGCGCT	1 cut(s)	49
FaeI	CATG	4 cut(s)	293, 308, 336, 371
FaiI	YATR	6 cut(s)	216, 291, 306, 334, 369, 375
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	4 cut(s)	289, 304, 332, 367
FauI	CCCGC	2 cut(s)	130, 310
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	6 cut(s)	84, 223, 309, 337, 351, 407
FokI	GGATG	3 cut(s)	154, 172, 209
Fsp4HI	GCNGC	6 cut(s)	84, 223, 309, 337, 351, 407
FspBI	CTAG	2 cut(s)	87, 150
GlaI	GCGC	3 cut(s)	49, 82, 340
GluI	GCNGC	6 cut(s)	84, 223, 309, 337, 351, 407
GsaI	CCCAGC	1 cut(s)	44
HaeII	RGCGCY	2 cut(s)	51, 84
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	2 cut(s)	84, 367
HhaI	GCGC	3 cut(s)	50, 83, 341
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	4 cut(s)	293, 308, 336, 371
Hin6I	GCGC	3 cut(s)	48, 81, 339
HinP1I	GCGC	3 cut(s)	48, 81, 339
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	122, 179
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	268, 361
Hpy188III	TCNNGA	2 cut(s)	181, 275
Hpy8I	GTNNAC	1 cut(s)	261
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	110, 187
HpyCH4V	TGCA	4 cut(s)	118, 225, 299, 311
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 134, 143, 243, 305, 314, 347
HpyF3I	CTNAG	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	4 cut(s)	293, 308, 336, 371
HspAI	GCGC	3 cut(s)	48, 81, 339
Kzo9I	GATC	5 cut(s)	89, 169, 329, 385, 389
LpnPI	CCDG	4 cut(s)	26, 186, 327, 377
Lsp1109I	GCAGC	3 cut(s)	70, 209, 295
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	87, 150
MalI	GATC	5 cut(s)	91, 171, 331, 387, 391
MboI	GATC	5 cut(s)	89, 169, 329, 385, 389
MboII	GAAGA	2 cut(s)	19, 169
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	2 cut(s)	7, 252
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	5 cut(s)	41, 46, 139, 392, 396
MslI	CAYNNNNRTG	3 cut(s)	151, 294, 372
MspI	CCGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	7 cut(s)	92, 134, 143, 243, 305, 314, 347
NdeII	GATC	5 cut(s)	89, 169, 329, 385, 389
NlaIII	CATG	4 cut(s)	293, 308, 336, 371
PaqCI	CACCTGC	1 cut(s)	332
PkrI	GCNGC	6 cut(s)	85, 224, 310, 338, 352, 408
Ple19I	CGATCG	1 cut(s)	388
PshAI	GACNNNNGTC	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	89
PvuI	CGATCG	1 cut(s)	388
RseI	CAYNNNNRTG	3 cut(s)	151, 294, 372
SalI	GTCGAC	1 cut(s)	259
SatI	GCNGC	6 cut(s)	84, 223, 309, 337, 351, 407
Sau3AI	GATC	5 cut(s)	89, 169, 329, 385, 389
Sau96I	GGNCC	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	4 cut(s)	105, 155, 274, 346
SfaNI	GCATC	1 cut(s)	155
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	3 cut(s)	151, 294, 372
Sse9I	AATT	2 cut(s)	7, 252
SsiI	CCGC	7 cut(s)	93, 137, 201, 317, 336, 350, 406
SspMI	CTAG	2 cut(s)	87, 150
TaaI	ACNGT	2 cut(s)	110, 187
TaqI	TCGA	4 cut(s)	105, 260, 384, 388
TasI	AATT	2 cut(s)	7, 252
TauI	GCSGC	3 cut(s)	339, 353, 409
TseI	GCWGC	3 cut(s)	83, 222, 308
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	2 cut(s)	7, 252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	2 cut(s)	87, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.