Rh7CG247000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000576
Physical Location & Seq
Forward (+)
23226650 .. 23226928
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG247000.1

Sequence Viewer

Length: 279 bp
ATGAGGGCGGATCTTCTTACCCCCGGCTCGGGCACTCCAGTGGCAGGGATGATGGTATGGCTCTGCTTTTCGGAGACATTTACCTCTGATGGTGATGCTGCCTGGTGCAGCGATGGGTTTTCCCACGTAGGTGGTGGCGATGGCTTGTTGATTGGCGGCGACGGTGTGCCGGTCCTGTGGGGTGCCCTTAGCAATTTCTGCTTGGGCCCTCTGTGGCTCACTCTGTTTTGTGGGCTCTACGCAAGGCTGGGTTTGGGTGGGCTGCGCATTCTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.56

Weight (kDa)

4.27

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 2 cut(s) 8, 156
AclWI GGATC 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 28, 29, 44
AjnI CCWGG 1 cut(s) 101
AleI CACNNNNGTG 2 cut(s) 38, 129
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 1 cut(s) 205
ApaI GGGCCC 1 cut(s) 209
ApeKI GCWGC 3 cut(s) 98, 108, 262
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 3 cut(s) 172, 205, 206
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 3 cut(s) 35, 187, 209
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 2 cut(s) 209, 237
BbvI GCAGC 3 cut(s) 85, 120, 249
BccI CCATC 4 cut(s) 46, 83, 107, 134
BciT130I CCWGG 1 cut(s) 103
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 68
BisI GCNGC 4 cut(s) 99, 109, 157, 263
BlsI GCNGC 4 cut(s) 100, 110, 158, 264
Bme1390I CCNGG 2 cut(s) 24, 103
Bme18I GGWCC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 3 cut(s) 172, 205, 206
BmiI GGNNCC 2 cut(s) 184, 207
BmrFI CCNGG 2 cut(s) 24, 103
BmsI GCATC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 29, 44
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 3 cut(s) 28, 29, 44
BseNI ACTGG 1 cut(s) 38
BseSI GKGCMC 3 cut(s) 35, 187, 209
BseXI GCAGC 3 cut(s) 85, 120, 249
BseYI CCCAGC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 127
BshFI GGCC 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 2 cut(s) 24, 170
BslI CCNNNNNNNGG 3 cut(s) 28, 29, 44
BsmAI GTCTC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 28
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 4 cut(s) 35, 187, 209, 237
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 2 cut(s) 8, 156
BspANI GGCC 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 184, 207
BspPI GGATC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 22, 101
BstSLI GKGCMC 3 cut(s) 35, 187, 209
BstV1I GCAGC 3 cut(s) 85, 120, 249
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 207
BtgZI GCGATG 2 cut(s) 126, 153
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 45
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 3 cut(s) 172, 205, 206
CviJI RGCY 8 cut(s) 27, 61, 144, 207, 217, 235, 247, 262
CviKI_1 RGCY 8 cut(s) 27, 61, 144, 207, 217, 235, 247, 262
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 23
Eco24I GRGCYC 2 cut(s) 209, 237
Eco47I GGWCC 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 101
EcoT38I GRGCYC 2 cut(s) 209, 237
FaiI YATR 1 cut(s) 58
Fnu4HI GCNGC 4 cut(s) 99, 109, 157, 263
FokI GGATG 1 cut(s) 61
FriOI GRGCYC 2 cut(s) 209, 237
Fsp4HI GCNGC 4 cut(s) 99, 109, 157, 263
FspI TGCGCA 1 cut(s) 266
GlaI GCGC 1 cut(s) 266
GluI GCNGC 4 cut(s) 99, 109, 157, 263
GsaI CCCAGC 1 cut(s) 251
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 1 cut(s) 207
HapII CCGG 2 cut(s) 24, 170
HhaI GCGC 1 cut(s) 267
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HpaII CCGG 2 cut(s) 24, 170
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 73, 88
Hpy99I CGWCG 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 126
HspAI GCGC 1 cut(s) 265
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 30, 37, 51, 88, 115, 183, 188, 233
Lsp1109I GCAGC 3 cut(s) 85, 120, 249
LweI GCATC 1 cut(s) 85
MaeII ACGT 1 cut(s) 126
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 5
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 4 cut(s) 35, 187, 209, 237
MluCI AATT 1 cut(s) 193
MnlI CCTC 2 cut(s) 94, 219
MslI CAYNNNNRTG 2 cut(s) 38, 129
MspI CCGG 2 cut(s) 24, 170
MspR9I CCNGG 2 cut(s) 24, 103
Mva1269I GAATGC 1 cut(s) 267
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 198
NciI CCSGG 1 cut(s) 24
NdeII GATC 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 184, 207
NsbI TGCGCA 1 cut(s) 266
OliI CACNNNNGTG 2 cut(s) 38, 129
PctI GAATGC 1 cut(s) 267
PkrI GCNGC 4 cut(s) 100, 110, 158, 264
Ppu21I YACGTR 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 247
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 184, 207
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 3 cut(s) 172, 205, 206
PsuI RGATCY 1 cut(s) 10
RseI CAYNNNNRTG 2 cut(s) 38, 129
SatI GCNGC 4 cut(s) 99, 109, 157, 263
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 3 cut(s) 172, 205, 206
ScrFI CCNGG 2 cut(s) 24, 103
SduI GDGCHC 4 cut(s) 35, 187, 209, 237
SetI ASST 3 cut(s) 86, 129, 133
SfaNI GCATC 1 cut(s) 85
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 2 cut(s) 38, 129
Sse9I AATT 1 cut(s) 193
SsiI CCGC 2 cut(s) 8, 156
StyD4I CCNGG 2 cut(s) 22, 101
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 129
TasI AATT 1 cut(s) 193
TauI GCSGC 1 cut(s) 159
TscAI CASTG 1 cut(s) 45
TseI GCWGC 3 cut(s) 98, 108, 262
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.