Rh1CG024800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000576
Physical Location & Seq
Forward (+)
4702643 .. 4703297
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG024800.1

Sequence Viewer

Length: 603 bp
ATGGCGGTGATGGCAGATCTTGGTCTGCTTGTTCTGTTCTTCATTGCGTTGTGGGACGCTGAGGCGGTGTTGAGTTCAGGGGTTGCAAGCGTTGTTGTTTCTGCCCCCAAGCTCGACGGTGACACAAATGAGGCGACCTTCGGGAGGGAGTTGGCATCTAAATGGCAACTGAGCAGCGATCCGGTCTTGGTTTGGTCAAGATCGGATCCGAAAGGTCGTTTCCGATCGAGTCCATGGGAAGATGTTCTCTGGCGTGCAGGCGATCTTGATCTCCAGGACGGGGACAGAGCGCGGGTTTGCTCGGACGCAGGGACTATTGCTTCTGCTGGTGGTGCTCATCGGCAGATCGACGGTCAGTACGGAGGTAAGAGTGGCTGTCAATTTGCACCGGGGATTCCGGAGCTGAGGGAGGATCTGCTTTTCTCTGACCCGGGTAGATCGTTGGTGGTGATTATGGTGCGTCTCTGCGCATCGGAGAAGCTTATCTTTGATGGTGAGGATGCTTGGTGCAACGACGGGCCCTACCACGTCTTTGGTGGTCGCGGCTTGCTGGTTGGCGGCGCCGGTGTGCTGGTCCGGTGGGGTGGATCCTATGGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.31

Weight (kDa)

4.71

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 469
AccB1I GGYRCC 1 cut(s) 560
AccII CGCG 2 cut(s) 292, 543
AccIII TCCGGA 1 cut(s) 397
AciI CCGC 5 cut(s) 5, 65, 292, 543, 558
AclWI GGATC 6 cut(s) 173, 200, 213, 420, 582, 595
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 144, 280
AjiI CACGTC 1 cut(s) 529
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 3 cut(s) 112, 403, 481
AluI AGCT 3 cut(s) 112, 403, 481
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 6 cut(s) 173, 200, 213, 420, 582, 595
Ama87I CYCGRG 1 cut(s) 430
Aor13HI TCCGGA 1 cut(s) 397
AoxI GGCC 1 cut(s) 518
ApaI GGGCCC 1 cut(s) 522
ApeKI GCWGC 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 243
AspLEI GCGC 3 cut(s) 292, 470, 563
AspS9I GGNCC 3 cut(s) 518, 519, 574
AsuC2I CCSGG 3 cut(s) 390, 431, 432
AsuHPI GGTGA 4 cut(s) 19, 131, 460, 506
AvaI CYCGRG 1 cut(s) 430
AvaII GGWCC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 522
BamHI GGATCC 2 cut(s) 205, 587
BanI GGYRCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 337
BbvCI CCTCAGC 2 cut(s) 60, 404
BbvI GCAGC 1 cut(s) 186
BccI CCATC 2 cut(s) 4, 485
BciT130I CCWGG 1 cut(s) 275
BcnI CCSGG 3 cut(s) 390, 431, 432
BcoDI GTCTC 1 cut(s) 467
BfoI RGCGCY 1 cut(s) 564
BglII AGATCT 1 cut(s) 16
BisI GCNGC 3 cut(s) 175, 544, 559
BlsI GCNGC 3 cut(s) 176, 545, 560
Bme1390I CCNGG 4 cut(s) 275, 390, 431, 432
Bme18I GGWCC 1 cut(s) 574
BmeT110I CYCGRG 1 cut(s) 430
BmgBI CACGTC 1 cut(s) 529
BmgT120I GGNCC 3 cut(s) 518, 519, 574
BmiI GGNNCC 4 cut(s) 207, 520, 562, 589
BmrFI CCNGG 4 cut(s) 275, 390, 431, 432
BmsI GCATC 3 cut(s) 164, 479, 490
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 2 cut(s) 60, 404
BpuMI CCSGG 3 cut(s) 390, 431, 432
BsaBI GATNNNNATC 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 3 cut(s) 233, 389, 430
BsaWI WCCGGW 3 cut(s) 181, 397, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 280
Bse118I RCCGGY 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 397
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 233, 389, 430
BseGI GGATG 1 cut(s) 505
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 144, 280
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 3 cut(s) 51, 161, 395
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 2 cut(s) 292, 543
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 1 cut(s) 520
BshNI GGYRCC 1 cut(s) 560
BsiEI CGRYCG 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 337
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 6 cut(s) 182, 389, 398, 431, 564, 577
BslFI GGGAC 3 cut(s) 68, 296, 325
BslI CCNNNNNNNGG 2 cut(s) 144, 280
BsmAI GTCTC 1 cut(s) 467
BsmBI CGTCTC 1 cut(s) 467
BsmFI GGGAC 3 cut(s) 68, 296, 325
BsnI GGCC 1 cut(s) 520
BsoBI CYCGRG 1 cut(s) 430
Bsp120I GGGCCC 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 337, 522
Bsp13I TCCGGA 1 cut(s) 397
Bsp19I CCATGG 1 cut(s) 233
BspACI CCGC 5 cut(s) 5, 65, 292, 543, 558
BspANI GGCC 1 cut(s) 520
BspCNI CTCAG 3 cut(s) 52, 162, 396
BspEI TCCGGA 1 cut(s) 397
BspFNI CGCG 2 cut(s) 292, 543
BspLI GGNNCC 4 cut(s) 207, 520, 562, 589
BspPI GGATC 6 cut(s) 173, 200, 213, 420, 582, 595
BspT107I GGYRCC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 563
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 3 cut(s) 233, 389, 430
BssNI GRCGYC 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 119, 353
BstACI GRCGYC 1 cut(s) 561
BstC8I GCNNGC 4 cut(s) 88, 255, 259, 548
BstDEI CTNAG 4 cut(s) 60, 170, 404, 600
BstDSI CCRYGG 1 cut(s) 233
BstENI CCTNNNNNAGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 2 cut(s) 292, 543
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 3 cut(s) 292, 470, 563
BstMAI GTCTC 1 cut(s) 467
BstMCI CGRYCG 1 cut(s) 227
BstMWI GCNNNNNNNGC 2 cut(s) 11, 332
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 4 cut(s) 273, 388, 429, 430
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 2 cut(s) 292, 543
BstV1I GCAGC 1 cut(s) 186
BstX2I RGATCY 4 cut(s) 16, 205, 412, 587
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 4 cut(s) 16, 205, 412, 587
BsuRI GGCC 1 cut(s) 520
BtgI CCRYGG 1 cut(s) 233
BtrI CACGTC 1 cut(s) 529
BtsCI GGATG 1 cut(s) 505
Cac8I GCNNGC 4 cut(s) 88, 255, 259, 548
CfoI GCGC 3 cut(s) 292, 470, 563
Cfr10I RCCGGY 1 cut(s) 563
Cfr13I GGNCC 3 cut(s) 518, 519, 574
Cfr9I CCCGGG 1 cut(s) 430
CseI GACGC 3 cut(s) 65, 314, 449
Csp6I GTAC 1 cut(s) 358
CviAII CATG 1 cut(s) 234
CviJI RGCY 6 cut(s) 112, 375, 403, 481, 520, 546
CviKI_1 RGCY 6 cut(s) 112, 375, 403, 481, 520, 546
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 4 cut(s) 60, 170, 404, 600
DinI GGCGCC 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 574
Eco88I CYCGRG 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 522
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 233
Esp3I CGTCTC 1 cut(s) 467
FaeI CATG 1 cut(s) 237
FaiI YATR 3 cut(s) 235, 455, 594
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 3 cut(s) 68, 296, 325
FatI CATG 1 cut(s) 233
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 175, 544, 559
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 3 cut(s) 175, 544, 559
FspI TGCGCA 1 cut(s) 469
GlaI GCGC 3 cut(s) 291, 469, 562
GluI GCNGC 3 cut(s) 175, 544, 559
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 1 cut(s) 520
HapII CCGG 6 cut(s) 182, 389, 398, 431, 564, 577
HgaI GACGC 3 cut(s) 65, 314, 449
HhaI GCGC 3 cut(s) 292, 470, 563
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 1 cut(s) 237
Hin6I GCGC 3 cut(s) 290, 468, 561
HinP1I GCGC 3 cut(s) 290, 468, 561
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 2 cut(s) 229, 394
HpaII CCGG 6 cut(s) 182, 389, 398, 431, 564, 577
HphI GGTGA 4 cut(s) 19, 131, 460, 506
Hpy188I TCNGA 6 cut(s) 205, 210, 224, 304, 427, 475
Hpy188III TCNNGA 4 cut(s) 142, 198, 266, 398
Hpy99I CGWCG 3 cut(s) 119, 353, 518
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 119, 353
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 4 cut(s) 86, 257, 386, 510
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 332
HpyF3I CTNAG 4 cut(s) 60, 170, 404, 600
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 1 cut(s) 237
HspAI GCGC 3 cut(s) 290, 468, 561
KasI GGCGCC 1 cut(s) 560
Kpn2I TCCGGA 1 cut(s) 397
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 3 cut(s) 164, 479, 490
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 2 cut(s) 31, 251
MflI RGATCY 4 cut(s) 16, 205, 412, 587
MhlI GDGCHC 2 cut(s) 337, 522
MluCI AATT 1 cut(s) 380
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 7 cut(s) 55, 124, 138, 356, 399, 403, 490
MroI TCCGGA 1 cut(s) 397
MroXI GAANNNNTTC 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 6 cut(s) 182, 389, 398, 431, 564, 577
MspR9I CCNGG 4 cut(s) 275, 390, 431, 432
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 2 cut(s) 292, 543
MwoI GCNNNNNNNGC 2 cut(s) 11, 332
NarI GGCGCC 1 cut(s) 561
NciI CCSGG 3 cut(s) 390, 431, 432
NcoI CCATGG 1 cut(s) 233
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 4 cut(s) 207, 520, 562, 589
NmuCI GTSAC 1 cut(s) 119
NsbI TGCGCA 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 394
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 3 cut(s) 176, 545, 560
Ple19I CGATCG 1 cut(s) 227
PleI GAGTC 1 cut(s) 237
PluTI GGCGCC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 4 cut(s) 207, 520, 562, 589
PspOMI GGGCCC 1 cut(s) 518
PspPI GGNCC 3 cut(s) 518, 519, 574
PsuI RGATCY 4 cut(s) 16, 205, 412, 587
PvuI CGATCG 1 cut(s) 227
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 160
SatI GCNGC 3 cut(s) 175, 544, 559
Sau96I GGNCC 3 cut(s) 518, 519, 574
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 4 cut(s) 275, 390, 431, 432
SduI GDGCHC 2 cut(s) 337, 522
SetI ASST 7 cut(s) 114, 140, 217, 367, 405, 483, 531
SfaNI GCATC 3 cut(s) 164, 479, 490
SfoI GGCGCC 1 cut(s) 562
SgrAI CRCCGGYG 1 cut(s) 563
SinI GGWCC 1 cut(s) 574
SmaI CCCGGG 1 cut(s) 432
SmiMI CAYNNNNRTG 1 cut(s) 160
Sse9I AATT 1 cut(s) 380
SsiI CCGC 5 cut(s) 5, 65, 292, 543, 558
SspDI GGCGCC 1 cut(s) 560
StyD4I CCNGG 4 cut(s) 273, 388, 429, 430
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 2 cut(s) 119, 353
TaiI ACGT 1 cut(s) 531
TaqI TCGA 3 cut(s) 114, 227, 348
TasI AATT 1 cut(s) 380
TauI GCSGC 2 cut(s) 546, 561
TfiI GAWTC 1 cut(s) 394
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 375
TspMI CCCGGG 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 574
XagI CCTNNNNNAGG 1 cut(s) 142
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XmaI CCCGGG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.