RLG00000007389

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000576
Physical Location & Seq
Forward (+)
16415388 .. 16419271
3884 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007389

Sequence Viewer

Length: 825 bp
ATGGTGGTTATGGCAGACTTGGGTCTGCTTATTCCCTTCTTCATTGAGCTGGGTGGCACTGAGGCTGTGTTGATTTCATGGGATGGGGGCGCTATTGTTTCTGCGTCCAAACCCGACGGTGAAGTGAAAGATGCGACCTCGTTTACGGGGATGGCATCTAGGTGGTGGATGAGCGGTGATCCGATCTTGGGTTGGGCTAGATTGGTTCGGAAGGTTCGTTTCCGATCGGGTGATGATTTTTGGCATGTCGGTGAACTTGCTGTTGTGGAAGACGGTGATATGCTGGTTTGCTTAACCTCGGGATTTGCCATCTCTAATGGCGATCATAGGCTGCCGGAGGCGGATCCGCTTGTTCCCACTCCGTATGGGCGGTATGGATATAATAACTGTTATGCTCCTCCTCCTCCTCCTCCCCTCATAATAATAATCGATACCATGATTATCAAATCCCACAGGCCCCGCCTGGTGCGCTTGGACGTCTTGGTTATAAGCCTTATAAGCCTGATTAAGCTAATTACCGTTTGGATGTCAATCAAGAAAAAGCAAAACAAGTCTTCGAATGATAATCTGAATCCTAAAACAAGTCCTATACATGGGCAAGCTCCAGTGTTGCTTCAATCTAGAGAAAATGAAGATATGATCGTAAAGTTATTTGGGAGTAGTGCTACTAATTTTGTTGGATTTGGAGCTGAGCAGGTCATCTTGGTGCGTGATGCTAGTGTTCAAAAGGAAATTTCTAACTCTGTTGGGAAACAAGCTCTTGTTCTTACTGTTGTGGAGTGCAAGGGGCTTGAGTTCCAGGTGGTTACAATGTCTATCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

275

Amino Acids

29.99

Weight (kDa)

6.1

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 488, 497
AatII GACGTC 1 cut(s) 480
Acc36I ACCTGC 1 cut(s) 685
AccBSI CCGCTC 1 cut(s) 174
AciI CCGC 5 cut(s) 174, 341, 347, 370, 460
AclWI GGATC 3 cut(s) 173, 338, 351
AcsI RAATTY 1 cut(s) 732
AcyI GRCGYC 1 cut(s) 477
AfiI CCNNNNNNNGG 2 cut(s) 188, 593
AgsI TTSAA 2 cut(s) 617, 725
AjnI CCWGG 2 cut(s) 462, 798
AluBI AGCT 5 cut(s) 49, 511, 602, 689, 758
AluI AGCT 5 cut(s) 49, 511, 602, 689, 758
AlwI GGATC 3 cut(s) 173, 338, 351
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 1 cut(s) 455
ApeKI GCWGC 1 cut(s) 331
ApoI RAATTY 1 cut(s) 732
AspLEI GCGC 2 cut(s) 92, 471
AspS9I GGNCC 1 cut(s) 456
AsuHPI GGTGA 5 cut(s) 131, 188, 242, 263, 287
AsuII TTCGAA 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 298
BamHI GGATCC 1 cut(s) 343
BbsI GAAGAC 2 cut(s) 276, 546
BbvI GCAGC 1 cut(s) 318
BccI CCATC 3 cut(s) 77, 145, 317
BciT130I CCWGG 2 cut(s) 464, 800
BfaI CTAG 4 cut(s) 159, 198, 621, 717
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 685
BisI GCNGC 1 cut(s) 332
BlpI GCTNAGC 1 cut(s) 690
BlsI GCNGC 1 cut(s) 333
Bme1390I CCNGG 2 cut(s) 464, 800
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 2 cut(s) 345, 458
BmrFI CCNGG 2 cut(s) 464, 800
BmsI GCATC 3 cut(s) 121, 164, 703
BoxI GACNNNNGTC 1 cut(s) 21
BpiI GAAGAC 2 cut(s) 276, 546
BpmI CTGGAG 1 cut(s) 588
Bpu1102I GCTNAGC 1 cut(s) 690
Bpu14I TTCGAA 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 812
Bsa29I ATCGAT 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 593
Bse1I ACTGG 1 cut(s) 605
Bse8I GATNNNNATC 1 cut(s) 530
BseBI CCWGG 2 cut(s) 464, 800
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 4 cut(s) 88, 156, 174, 531
BseJI GATNNNNATC 1 cut(s) 530
BseLI CCNNNNNNNGG 2 cut(s) 188, 593
BseMII CTCAG 2 cut(s) 51, 681
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 5 cut(s) 387, 390, 393, 396, 399
BseXI GCAGC 1 cut(s) 318
BseYI CCCAGC 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 1 cut(s) 457
BshVI ATCGAT 1 cut(s) 429
BsiEI CGRYCG 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 188, 593
BsnI GGCC 1 cut(s) 457
BsoBI CYCGRG 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 557
Bsp143I GATC 6 cut(s) 178, 183, 224, 322, 343, 639
Bsp1720I GCTNAGC 1 cut(s) 690
BspACI CCGC 5 cut(s) 174, 341, 347, 370, 460
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 2 cut(s) 52, 682
BspDI ATCGAT 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 345, 458
BspMI ACCTGC 1 cut(s) 685
BspPI GGATC 3 cut(s) 173, 338, 351
BspT104I TTCGAA 1 cut(s) 557
BsrBI CCGCTC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 6 cut(s) 178, 183, 224, 322, 343, 639
BssNI GRCGYC 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 464, 800
Bst4CI ACNGT 5 cut(s) 119, 275, 389, 520, 772
BstACI GRCGYC 1 cut(s) 477
BstBI TTCGAA 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 2 cut(s) 60, 690
BstF5I GGATG 4 cut(s) 88, 156, 174, 531
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 2 cut(s) 92, 471
BstKTI GATC 6 cut(s) 181, 186, 227, 325, 346, 642
BstMBI GATC 6 cut(s) 178, 183, 224, 322, 343, 639
BstMCI CGRYCG 1 cut(s) 227
BstMWI GCNNNNNNNGC 2 cut(s) 468, 498
BstNI CCWGG 2 cut(s) 464, 800
BstNSI RCATGY 1 cut(s) 248
BstPAI GACNNNNGTC 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 462, 798
BstV1I GCAGC 1 cut(s) 318
BstV2I GAAGAC 2 cut(s) 276, 546
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
Bsu15I ATCGAT 1 cut(s) 429
BsuRI GGCC 1 cut(s) 457
BsuTUI ATCGAT 1 cut(s) 429
BtsCI GGATG 4 cut(s) 88, 156, 174, 531
BtsIMutI CAGTG 2 cut(s) 57, 612
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 1 cut(s) 600
CfoI GCGC 2 cut(s) 92, 471
Cfr13I GGNCC 1 cut(s) 456
ClaI ATCGAT 1 cut(s) 429
CseI GACGC 1 cut(s) 93
CviAII CATG 4 cut(s) 78, 245, 436, 593
DdeI CTNAG 2 cut(s) 60, 690
DpnI GATC 6 cut(s) 180, 185, 226, 324, 345, 641
DpnII GATC 6 cut(s) 178, 183, 224, 322, 343, 639
EciI GGCGGA 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 456
EcoRII CCWGG 2 cut(s) 462, 798
FaeI CATG 4 cut(s) 81, 248, 439, 596
FatI CATG 4 cut(s) 77, 244, 435, 592
FauI CCCGC 1 cut(s) 467
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 4 cut(s) 95, 163, 181, 538
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 4 cut(s) 159, 198, 621, 717
GlaI GCGC 2 cut(s) 91, 470
GluI GCNGC 1 cut(s) 332
GsaI CCCAGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 588
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 457
HapII CCGG 1 cut(s) 335
HgaI GACGC 1 cut(s) 93
HhaI GCGC 2 cut(s) 92, 471
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 4 cut(s) 81, 248, 439, 596
Hin6I GCGC 2 cut(s) 90, 469
HinP1I GCGC 2 cut(s) 90, 469
HinfI GANTC 1 cut(s) 571
HpaII CCGG 1 cut(s) 335
HphI GGTGA 5 cut(s) 131, 188, 242, 263, 287
Hpy166II GTNNAC 2 cut(s) 144, 254
Hpy188I TCNGA 4 cut(s) 183, 210, 224, 570
Hpy188III TCNNGA 3 cut(s) 300, 535, 621
Hpy8I GTNNAC 2 cut(s) 144, 254
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 46, 205
HpyCH4III ACNGT 5 cut(s) 119, 275, 389, 520, 772
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 1 cut(s) 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 468, 498
HpyF3I CTNAG 2 cut(s) 60, 690
HpySE526I ACGT 1 cut(s) 477
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 4 cut(s) 81, 248, 439, 596
HspAI GCGC 2 cut(s) 90, 469
Kzo9I GATC 6 cut(s) 178, 183, 224, 322, 343, 639
LmnI GCTCC 3 cut(s) 400, 607, 686
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 3 cut(s) 121, 164, 703
MaeI CTAG 4 cut(s) 159, 198, 621, 717
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 805
MalI GATC 6 cut(s) 180, 185, 226, 324, 345, 641
MbiI CCGCTC 1 cut(s) 174
MboI GATC 6 cut(s) 178, 183, 224, 322, 343, 639
MboII GAAGA 4 cut(s) 31, 281, 546, 644
MflI RGATCY 1 cut(s) 343
MluCI AATT 3 cut(s) 513, 670, 732
MmeI TCCRAC 1 cut(s) 658
MseI TTAA 2 cut(s) 293, 507
MslI CAYNNNNRTG 3 cut(s) 160, 249, 704
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 2 cut(s) 464, 800
MvaI CCWGG 2 cut(s) 464, 800
MwoI GCNNNNNNNGC 2 cut(s) 468, 498
NdeII GATC 6 cut(s) 178, 183, 224, 322, 343, 639
NlaIII CATG 4 cut(s) 81, 248, 439, 596
NlaIV GGNNCC 2 cut(s) 345, 458
NspI RCATGY 1 cut(s) 248
NspV TTCGAA 1 cut(s) 557
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PfeI GAWTC 1 cut(s) 571
PkrI GCNGC 1 cut(s) 333
Ple19I CGATCG 1 cut(s) 227
PshAI GACNNNNGTC 1 cut(s) 21
PsiI TTATAA 2 cut(s) 488, 497
Psp6I CCWGG 2 cut(s) 462, 798
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 2 cut(s) 462, 798
PspN4I GGNNCC 2 cut(s) 345, 458
PspPI GGNCC 1 cut(s) 456
PsuI RGATCY 1 cut(s) 343
PvuI CGATCG 1 cut(s) 227
RseI CAYNNNNRTG 3 cut(s) 160, 249, 704
SaqAI TTAA 2 cut(s) 293, 507
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 6 cut(s) 178, 183, 224, 322, 343, 639
Sau96I GGNCC 1 cut(s) 456
ScrFI CCNGG 2 cut(s) 464, 800
SfaNI GCATC 3 cut(s) 121, 164, 703
SfuI TTCGAA 1 cut(s) 557
SmiMI CAYNNNNRTG 3 cut(s) 160, 249, 704
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 3 cut(s) 513, 670, 732
SsiI CCGC 5 cut(s) 174, 341, 347, 370, 460
SspMI CTAG 4 cut(s) 159, 198, 621, 717
StyD4I CCNGG 2 cut(s) 462, 798
TaaI ACNGT 5 cut(s) 119, 275, 389, 520, 772
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 429, 557
TasI AATT 3 cut(s) 513, 670, 732
TfiI GAWTC 1 cut(s) 571
Tru1I TTAA 2 cut(s) 293, 507
Tru9I TTAA 2 cut(s) 293, 507
TscAI CASTG 2 cut(s) 64, 612
TseI GCWGC 1 cut(s) 331
TspDTI ATGAA 3 cut(s) 31, 66, 645
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 2 cut(s) 64, 612
XapI RAATTY 1 cut(s) 732
XbaI TCTAGA 1 cut(s) 620
XceI RCATGY 1 cut(s) 248
XspI CTAG 4 cut(s) 159, 198, 621, 717
ZraI GACGTC 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.