Rh3AG105800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000576
Physical Location & Seq
Forward (+)
8917230 .. 8929016
11787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG105800.1

Sequence Viewer

Length: 501 bp
ATGTTGATTTCATGGGACGGGGGCGCAGTTGTTTCTGCGTCCAAGCCCGATGGTGAAGTGAAAGATGCGGCCTCGTTTGCAGGGATGGCATCTAGGTGGCGGATGAGCGGCGATCCGATCTTGGGTTGGTTTAGATCTATTCGGAAGGTTCGTTTCCGATCACGTGCTGATTTTTGGAGTGCTGGTGATCTTGTTGTCGTGGAGGGTGATGATGTGATGGTTTGCCTGACCTCGAGGACCGCTACTGCTGATGGTGGTCTGAGGCTGCCGGAGGTGAGGCTGGCTCTGCTTCCCTCTGACTTGGACCCTTTGCTGGCGAGGAGGATAACTTCGCTCTGCTTGTCAGAGGAATCTGCCTTTGATGGTGGTAACCCGGTGGCCGGGATGATGGTTGCGAGGTTTGAAATTGATAATTCCGTTCAAATCGAAATGCAGAAGCTTCGATCAGTAATTTCAGGTGAAGGTTTTGGTAGAGTAACTTATGATTTTGCCAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.05

Weight (kDa)

5.23

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 232
AccBSI CCGCTC 1 cut(s) 108
AciI CCGC 4 cut(s) 68, 100, 108, 240
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 378
AcvI CACGTG 1 cut(s) 164
AfiI CCNNNNNNNGG 3 cut(s) 122, 313, 380
AgsI TTSAA 2 cut(s) 404, 422
AluBI AGCT 1 cut(s) 439
AluI AGCT 1 cut(s) 439
AlwI GGATC 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 2 cut(s) 69, 378
ApeKI GCWGC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 237, 304
AsuC2I CCSGG 2 cut(s) 374, 382
AsuHPI GGTGA 5 cut(s) 65, 197, 218, 286, 470
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 2 cut(s) 237, 304
BbrPI CACGTG 1 cut(s) 164
BbvI GCAGC 1 cut(s) 252
BccI CCATC 6 cut(s) 44, 79, 211, 245, 356, 382
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BcnI CCSGG 2 cut(s) 374, 382
BfaI CTAG 1 cut(s) 93
BglII AGATCT 1 cut(s) 134
BisI GCNGC 3 cut(s) 69, 109, 266
BlsI GCNGC 3 cut(s) 70, 110, 267
Bme1390I CCNGG 2 cut(s) 374, 382
Bme18I GGWCC 2 cut(s) 237, 304
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 237, 304
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 2 cut(s) 374, 382
BmsI GCATC 2 cut(s) 55, 98
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpuMI CCSGG 2 cut(s) 374, 382
BsaAI YACGTR 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 313, 380
BseGI GGATG 3 cut(s) 90, 108, 390
BseLI CCNNNNNNNGG 3 cut(s) 122, 313, 380
BseMII CTCAG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 334
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 2 cut(s) 71, 380
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 3 cut(s) 269, 374, 381
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 122, 313, 380
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 2 cut(s) 71, 380
BsoBI CYCGRG 1 cut(s) 232
Bsp143I GATC 6 cut(s) 112, 117, 134, 158, 187, 443
BspACI CCGC 4 cut(s) 68, 100, 108, 240
BspANI GGCC 2 cut(s) 71, 380
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 108
BssMI GATC 6 cut(s) 112, 117, 134, 158, 187, 443
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 282, 315
BstDEI CTNAG 1 cut(s) 260
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 3 cut(s) 90, 108, 390
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 6 cut(s) 115, 120, 137, 161, 190, 446
BstMBI GATC 6 cut(s) 112, 117, 134, 158, 187, 443
BstMWI GCNNNNNNNGC 3 cut(s) 77, 86, 286
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 372, 380
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 2 cut(s) 71, 380
BtsCI GGATG 3 cut(s) 90, 108, 390
Cac8I GCNNGC 2 cut(s) 282, 315
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 237, 304
CseI GACGC 1 cut(s) 27
CviAII CATG 1 cut(s) 12
CviJI RGCY 7 cut(s) 46, 71, 265, 280, 284, 380, 439
CviKI_1 RGCY 7 cut(s) 46, 71, 265, 280, 284, 380, 439
DdeI CTNAG 1 cut(s) 260
DpnI GATC 6 cut(s) 114, 119, 136, 160, 189, 445
DpnII GATC 6 cut(s) 112, 117, 134, 158, 187, 443
EaeI YGGCCR 1 cut(s) 378
EciI GGCGGA 1 cut(s) 115
Eco47I GGWCC 2 cut(s) 237, 304
Eco72I CACGTG 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 232
Eco91I GGTNACC 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 368
FaeI CATG 1 cut(s) 15
FaiI YATR 2 cut(s) 13, 483
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 11
Fnu4HI GCNGC 3 cut(s) 69, 109, 266
FokI GGATG 3 cut(s) 97, 115, 397
Fsp4HI GCNGC 3 cut(s) 69, 109, 266
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 25
GluI GCNGC 3 cut(s) 69, 109, 266
HaeIII GGCC 2 cut(s) 71, 380
HapII CCGG 3 cut(s) 269, 374, 381
HgaI GACGC 1 cut(s) 27
HhaI GCGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 15
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 1 cut(s) 350
HpaII CCGG 3 cut(s) 269, 374, 381
HphI GGTGA 5 cut(s) 65, 197, 218, 286, 470
Hpy188I TCNGA 6 cut(s) 117, 144, 158, 261, 298, 346
HpyAV CCTTC 2 cut(s) 139, 455
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 80, 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 86, 286
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 1 cut(s) 15
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 6 cut(s) 112, 117, 134, 158, 187, 443
LpnPI CCDG 9 cut(s) 66, 168, 239, 266, 282, 299, 387, 394, 441
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 2 cut(s) 55, 98
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 2 cut(s) 368, 475
MalI GATC 6 cut(s) 114, 119, 136, 160, 189, 445
MbiI CCGCTC 1 cut(s) 108
MboI GATC 6 cut(s) 112, 117, 134, 158, 187, 443
MflI RGATCY 1 cut(s) 134
MluCI AATT 3 cut(s) 405, 412, 450
MslI CAYNNNNRTG 1 cut(s) 94
MspI CCGG 3 cut(s) 269, 374, 381
MspR9I CCNGG 2 cut(s) 374, 382
MwoI GCNNNNNNNGC 3 cut(s) 77, 86, 286
NciI CCSGG 2 cut(s) 374, 382
NdeII GATC 6 cut(s) 112, 117, 134, 158, 187, 443
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 1 cut(s) 306
PaeR7I CTCGAG 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 3 cut(s) 70, 110, 267
PmaCI CACGTG 1 cut(s) 164
PmlI CACGTG 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 164
PspCI CACGTG 1 cut(s) 164
PspEI GGTNACC 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 2 cut(s) 237, 304
PspXI VCTCGAGB 1 cut(s) 232
PsuI RGATCY 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 94
SatI GCNGC 3 cut(s) 69, 109, 266
Sau3AI GATC 6 cut(s) 112, 117, 134, 158, 187, 443
Sau96I GGNCC 2 cut(s) 237, 304
ScrFI CCNGG 2 cut(s) 374, 382
SetI ASST 9 cut(s) 98, 150, 166, 233, 276, 401, 441, 460, 466
SfaNI GCATC 2 cut(s) 55, 98
Sfr274I CTCGAG 1 cut(s) 232
SinI GGWCC 2 cut(s) 237, 304
SlaI CTCGAG 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 3 cut(s) 405, 412, 450
SsiI CCGC 4 cut(s) 68, 100, 108, 240
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 372, 380
TaiI ACGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 233, 426, 442
TasI AATT 3 cut(s) 405, 412, 450
TauI GCSGC 2 cut(s) 71, 111
TfiI GAWTC 1 cut(s) 350
TseI GCWGC 1 cut(s) 265
TspGWI ACGGA 1 cut(s) 406
VpaK11BI GGWCC 2 cut(s) 237, 304
XhoI CTCGAG 1 cut(s) 232
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.