RLG00000003686

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000576
Physical Location & Seq
Reverse (-)
51660416 .. 51662654
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003686

Sequence Viewer

Length: 507 bp
ATGGAAGGAAATGATGTGCTGGTTTGCTCGACCTCAGGATCGGCCATCTCTAATGGCGATCCTAGGCTGCCAGAGGTGAGACCGGCTTTGTTTCCCTCGGGCTCCGACCTTTTGTTGGCTGGGAGGATGACTTATTTCTACTGTTCAGAGGAAGCTTCTTTTGATGGTGGTAACCCGATTGCCAGGATTTTGAGGAAGCTTCACTTGGAATCGGGCCCTACTAGTGATGGTGGAAGAGTGGGCGACGTCCTCCTGCGAGTGGCGGTCGGTAGCGGGGGTAGAGCTGTCTTCTCACTTAGAGTTTGCCCTAGCTCCATCAATTTTGCTGAAGACAAAAAAATGGACAACACCAACAACGCCAACAAGCCCCGCAACGATAAGGGGGCTCCGCACCATCCCCAGCCATCCCAACCACCACCCCCAACCTTTGACATGACTACAATAATCACCAAGCGTAAGGATTTAAAATTTGCCAAAAAGAAGGAGGAGAAAGAAGGAGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.04

Weight (kDa)

8.81

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AciI CCGC 4 cut(s) 263, 273, 370, 389
AclWI GGATC 2 cut(s) 46, 53
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 1 cut(s) 348
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 115, 259
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 4 cut(s) 155, 199, 284, 312
AluI AGCT 4 cut(s) 155, 199, 284, 312
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 46, 53
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 2 cut(s) 42, 214
ApaI GGGCCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 467
AspA2I CCTAGG 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 214, 215
AsuHPI GGTGA 2 cut(s) 88, 439
AvaI CYCGRG 1 cut(s) 97
AvrII CCTAGG 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 218
BanII GRGCYC 3 cut(s) 104, 218, 388
BbsI GAAGAC 2 cut(s) 280, 336
BbvI GCAGC 1 cut(s) 54
BccI CCATC 6 cut(s) 53, 158, 221, 323, 402, 412
BciT130I CCWGG 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 3 cut(s) 63, 222, 309
BisI GCNGC 1 cut(s) 68
BlnI CCTAGG 1 cut(s) 62
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 214, 215
BmiI GGNNCC 3 cut(s) 103, 216, 387
BmrFI CCNGG 1 cut(s) 184
BpiI GAAGAC 2 cut(s) 280, 336
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 62, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 259
Bse118I RCCGGY 1 cut(s) 82
Bse21I CCTNAGG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 62, 96
BseGI GGATG 3 cut(s) 132, 394, 404
BseLI CCNNNNNNNGG 2 cut(s) 115, 259
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 218
BseXI GCAGC 1 cut(s) 54
BseYI CCCAGC 2 cut(s) 119, 399
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 2 cut(s) 44, 216
BsiEI CGRYCG 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 115, 259
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 2 cut(s) 44, 216
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 97
Bsp120I GGGCCC 1 cut(s) 214
Bsp1286I GDGCHC 3 cut(s) 104, 218, 388
Bsp143I GATC 2 cut(s) 38, 58
BspACI CCGC 4 cut(s) 263, 273, 370, 389
BspANI GGCC 2 cut(s) 44, 216
BspCNI CTCAG 1 cut(s) 47
BspLI GGNNCC 3 cut(s) 103, 216, 387
BspPI GGATC 2 cut(s) 46, 53
BspTNI GGTCTC 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 62, 96
BssMI GATC 2 cut(s) 38, 58
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 229
BstACI GRCGYC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 34, 296
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 3 cut(s) 132, 394, 404
BstKTI GATC 2 cut(s) 41, 61
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 38, 58
BstMCI CGRYCG 1 cut(s) 267
BstNI CCWGG 1 cut(s) 184
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 182
BstSLI GKGCMC 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 2 cut(s) 280, 336
Bsu36I CCTNAGG 1 cut(s) 34
BsuRI GGCC 2 cut(s) 44, 216
BtsCI GGATG 3 cut(s) 132, 394, 404
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 214, 215
CviAII CATG 1 cut(s) 433
DdeI CTNAG 2 cut(s) 34, 296
DpnI GATC 2 cut(s) 40, 60
DpnII GATC 2 cut(s) 38, 58
DraI TTTAAA 1 cut(s) 465
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 62
Eco24I GRGCYC 3 cut(s) 104, 218, 388
Eco31I GGTCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 348
Eco81I CCTNAGG 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 97
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 62
EcoT38I GRGCYC 3 cut(s) 104, 218, 388
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 1 cut(s) 436
FaiI YATR 1 cut(s) 434
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 1 cut(s) 432
FauI CCCGC 2 cut(s) 266, 377
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 3 cut(s) 139, 381, 391
FriOI GRGCYC 3 cut(s) 104, 218, 388
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 3 cut(s) 63, 222, 309
GluI GCNGC 1 cut(s) 68
GsaI CCCAGC 2 cut(s) 123, 403
HaeIII GGCC 2 cut(s) 44, 216
HapII CCGG 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 1 cut(s) 436
HindIII AAGCTT 2 cut(s) 153, 197
HinfI GANTC 1 cut(s) 209
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 88, 439
Hpy188I TCNGA 2 cut(s) 106, 148
Hpy188III TCNNGA 1 cut(s) 36
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 475, 488
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 34, 296
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 1 cut(s) 436
Kzo9I GATC 2 cut(s) 38, 58
LmnI GCTCC 3 cut(s) 107, 317, 391
LpnPI CCDG 9 cut(s) 5, 21, 84, 96, 105, 169, 196, 266, 413
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 3 cut(s) 63, 222, 309
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 40, 60
MboI GATC 2 cut(s) 38, 58
MboII GAAGA 3 cut(s) 246, 280, 341
MhlI GDGCHC 3 cut(s) 104, 218, 388
MluCI AATT 2 cut(s) 319, 467
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 9 cut(s) 43, 67, 106, 117, 142, 186, 260, 478, 491
MseI TTAA 1 cut(s) 464
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
NdeII GATC 2 cut(s) 38, 58
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 3 cut(s) 103, 216, 387
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 182
PspEI GGTNACC 1 cut(s) 170
PspFI CCCAGC 2 cut(s) 119, 399
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 103, 216, 387
PspOMI GGGCCC 1 cut(s) 214
PspPI GGNCC 2 cut(s) 214, 215
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 2 cut(s) 38, 58
Sau96I GGNCC 2 cut(s) 214, 215
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 3 cut(s) 104, 218, 388
SetI ASST 9 cut(s) 35, 78, 111, 157, 201, 249, 286, 314, 428
SpeI ACTAGT 1 cut(s) 221
Sse9I AATT 2 cut(s) 319, 467
SsiI CCGC 4 cut(s) 263, 273, 370, 389
SspMI CTAG 3 cut(s) 63, 222, 309
StyD4I CCNGG 1 cut(s) 182
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 29
TasI AATT 2 cut(s) 319, 467
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TseI GCWGC 1 cut(s) 67
XapI RAATTY 1 cut(s) 467
XmaJI CCTAGG 1 cut(s) 62
XspI CTAG 3 cut(s) 63, 222, 309
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.