RLG00000004905

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000576
Physical Location & Seq
Forward (+)
63562102 .. 63562609
508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004905

Sequence Viewer

Length: 390 bp
ATGGTGGTGATGGCAGACTTTGGTCTGCTTATTCTCTTCTTGTTTGCGTTGGGGGACGCTGTGGCTGTGGTGAATTCGGGGGTTGGAGGCGCTGGTGTTTTTGCGTCTAAACTCGATGGTGAAGTGAAAGATACAGCCTCGTTGGTGAGGATGGCATCTACATGGTGGATGAGGGACGATCCGGTCTTGGGTTGGTCAAGATCGGATCTGACAGCGTCCCTCCCGGTGGAGCTCTTCGAGATAGCGGCGGTGCTTGTTGCAGCAGCGGCTTGTGGGTCAGTGGCGATATGGGATCGGCTTTGGTCTCTGGTTGGGGTGCGTTTGCAGATACGGCAGTATTTGTTCGGTGTTGTGGTTTGGAGGTCGACGGTGATGGAACAGTGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.03

Weight (kDa)

4.9

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 365
AciI CCGC 3 cut(s) 245, 248, 266
AclWI GGATC 3 cut(s) 173, 213, 300
AcsI RAATTY 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 188, 226
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 3 cut(s) 173, 213, 300
ApeKI GCWGC 2 cut(s) 260, 263
ApoI RAATTY 1 cut(s) 73
AspLEI GCGC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 5 cut(s) 19, 82, 131, 157, 382
BaeI ACNNNNGTAYC 2 cut(s) 320, 353
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 272, 275
BccI CCATC 4 cut(s) 4, 110, 145, 367
BceAI ACGGC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 93
BisI GCNGC 4 cut(s) 246, 261, 264, 267
BlsI GCNGC 4 cut(s) 247, 262, 265, 268
Bme1390I CCNGG 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 164
BoxI GACNNNNGTC 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 226
BseGI GGATG 2 cut(s) 156, 174
BseLI CCNNNNNNNGG 2 cut(s) 188, 226
BseXI GCAGC 2 cut(s) 272, 275
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 182, 224
BslFI GGGAC 3 cut(s) 68, 188, 202
BslI CCNNNNNNNGG 2 cut(s) 188, 226
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 3 cut(s) 68, 188, 202
Bso31I GGTCTC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 4 cut(s) 178, 200, 205, 292
BspACI CCGC 3 cut(s) 245, 248, 266
BspPI GGATC 3 cut(s) 173, 213, 300
BspQI GCTCTTC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 309
BssMI GATC 4 cut(s) 178, 200, 205, 292
Bst4CI ACNGT 2 cut(s) 370, 381
Bst6I CTCTTC 2 cut(s) 41, 239
BstF5I GGATG 2 cut(s) 156, 174
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 4 cut(s) 181, 203, 208, 295
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 4 cut(s) 178, 200, 205, 292
BstMWI GCNNNNNNNGC 2 cut(s) 266, 331
BstPAI GACNNNNGTC 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 272, 275
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BtsCI GGATG 2 cut(s) 156, 174
BtsIMutI CAGTG 3 cut(s) 285, 385, 386
CfoI GCGC 1 cut(s) 92
CseI GACGC 3 cut(s) 65, 93, 204
CviAII CATG 1 cut(s) 162
CviJI RGCY 5 cut(s) 65, 137, 232, 269, 298
CviKI_1 RGCY 5 cut(s) 65, 137, 232, 269, 298
DpnI GATC 4 cut(s) 180, 202, 207, 294
DpnII GATC 4 cut(s) 178, 200, 205, 292
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 41, 239
EarI CTCTTC 2 cut(s) 41, 239
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 1 cut(s) 165
FaiI YATR 2 cut(s) 163, 289
FaqI GGGAC 3 cut(s) 68, 188, 202
FatI CATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 4 cut(s) 246, 261, 264, 267
FokI GGATG 2 cut(s) 163, 181
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 4 cut(s) 246, 261, 264, 267
GlaI GCGC 1 cut(s) 91
GluI GCNGC 4 cut(s) 246, 261, 264, 267
HaeII RGCGCY 1 cut(s) 93
HapII CCGG 2 cut(s) 182, 224
HgaI GACGC 3 cut(s) 65, 93, 204
HhaI GCGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 165
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HpaII CCGG 2 cut(s) 182, 224
HphI GGTGA 5 cut(s) 19, 82, 131, 157, 382
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 2 cut(s) 205, 210
Hpy188III TCNNGA 2 cut(s) 198, 238
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 1 cut(s) 370
HpyCH4III ACNGT 2 cut(s) 370, 381
HpyCH4V TGCA 2 cut(s) 260, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 331
Hsp92II CATG 1 cut(s) 165
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 178, 200, 205, 292
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 4 cut(s) 78, 195, 237, 293
Lsp1109I GCAGC 2 cut(s) 272, 275
LweI GCATC 1 cut(s) 164
MalI GATC 4 cut(s) 180, 202, 207, 294
MboI GATC 4 cut(s) 178, 200, 205, 292
MboII GAAGA 2 cut(s) 28, 226
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 6 cut(s) 80, 141, 148, 165, 230, 354
MslI CAYNNNNRTG 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 2 cut(s) 182, 224
MspR9I CCNGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 266, 331
NciI CCSGG 1 cut(s) 224
NdeII GATC 4 cut(s) 178, 200, 205, 292
NlaIII CATG 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 239
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 247, 262, 265, 268
PshAI GACNNNNGTC 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 205
PsyI GACNNNGTC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 234
SalI GTCGAC 1 cut(s) 364
SapI GCTCTTC 1 cut(s) 239
SatI GCNGC 4 cut(s) 246, 261, 264, 267
Sau3AI GATC 4 cut(s) 178, 200, 205, 292
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 234
SetI ASST 2 cut(s) 234, 365
SfaNI GCATC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 160
Sse9I AATT 1 cut(s) 73
SsiI CCGC 3 cut(s) 245, 248, 266
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 370, 381
TaqI TCGA 3 cut(s) 114, 237, 365
TasI AATT 1 cut(s) 73
TauI GCSGC 2 cut(s) 248, 269
TscAI CASTG 2 cut(s) 285, 386
TseI GCWGC 2 cut(s) 260, 263
TspRI CASTG 2 cut(s) 285, 386
Tth111I GACNNNGTC 1 cut(s) 214
XapI RAATTY 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.