RLG00000005713

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000576
Physical Location & Seq
Forward (+)
1082805 .. 1088146
5342 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005713

Sequence Viewer

Length: 501 bp
ATGGTGGTTATGGCAGACTTGGGTCTGCTTATTCTCTTCTTCATTGTGCTGGGTGGCGCTGAGGCGGTGTTGATTTCATGGGATGGGGGCGCTGTTGTTTCCGCGTCCAAACTCGATGGTGAAGTGCAAGATGCGGCCTCGTTTGCAGGGATGGCATCTAGGTGGCGGATGAGCGACGATCCGATCTTGGATTCGGATGTCGATGACCTTGCTGTTGTGGAAGACGATGATTTGCTAGTTTGCTTGACCTCGGGATCTGCCATCTCTAATGGTGATTTGAGGCTGCCGGAGATAAGACCGCCTCTATTTCCCTCGGGATCGGACTCTTTGTTGGAAGCTGCTTTTGATGGTGGTAACCCTGTGGTCGGGATGTTGGCTGCGAGCTCTGACATCGGTGGCTGCGCAGATTGCGAAGAAGCTCGATGGCAGGACAGGGATGATCTCGGGTCTATGGAATTCCACTCTGACCTCATGAAGCTCCTCCAAATTGAGGTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.45

Weight (kDa)

4.05

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 403
AccII CGCG 1 cut(s) 104
AciI CCGC 5 cut(s) 65, 102, 134, 166, 299
AclWI GGATC 3 cut(s) 173, 262, 325
AcsI RAATTY 1 cut(s) 455
AfiI CCNNNNNNNGG 2 cut(s) 365, 490
AluBI AGCT 4 cut(s) 338, 384, 419, 478
AluI AGCT 4 cut(s) 338, 384, 419, 478
Alw21I GWGCWC 1 cut(s) 386
AlwI GGATC 3 cut(s) 173, 262, 325
Ama87I CYCGRG 3 cut(s) 250, 313, 443
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 4 cut(s) 283, 338, 377, 399
ApoI RAATTY 1 cut(s) 455
AspLEI GCGC 3 cut(s) 59, 92, 404
AsuHPI GGTGA 2 cut(s) 131, 284
AvaI CYCGRG 3 cut(s) 250, 313, 443
BanII GRGCYC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 386
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 4 cut(s) 270, 325, 364, 386
BccI CCATC 6 cut(s) 77, 110, 145, 269, 341, 417
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BfaI CTAG 2 cut(s) 159, 236
BfoI RGCGCY 2 cut(s) 60, 93
BisI GCNGC 5 cut(s) 135, 284, 339, 378, 400
BlsI GCNGC 5 cut(s) 136, 285, 340, 379, 401
BmeT110I CYCGRG 3 cut(s) 250, 313, 443
BmsI GCATC 2 cut(s) 121, 164
BoxI GACNNNNGTC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 249, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 490
BseDI CCNNGG 2 cut(s) 249, 312
BseGI GGATG 6 cut(s) 88, 156, 174, 202, 375, 442
BseLI CCNNNNNNNGG 2 cut(s) 365, 490
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 4 cut(s) 270, 325, 364, 386
BseYI CCCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 386
BsiHKCI CYCGRG 3 cut(s) 250, 313, 443
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 365, 490
BsnI GGCC 1 cut(s) 137
BsoBI CYCGRG 3 cut(s) 250, 313, 443
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 5 cut(s) 178, 183, 254, 317, 439
BspACI CCGC 5 cut(s) 65, 102, 134, 166, 299
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 52
BspFNI CGCG 1 cut(s) 104
BspHI TCATGA 1 cut(s) 471
BspPI GGATC 3 cut(s) 173, 262, 325
BssECI CCNNGG 2 cut(s) 249, 312
BssMI GATC 5 cut(s) 178, 183, 254, 317, 439
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 60
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 6 cut(s) 88, 156, 174, 202, 375, 442
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 2 cut(s) 60, 93
BstHHI GCGC 3 cut(s) 59, 92, 404
BstKTI GATC 5 cut(s) 181, 186, 257, 320, 442
BstMBI GATC 5 cut(s) 178, 183, 254, 317, 439
BstMWI GCNNNNNNNGC 3 cut(s) 143, 152, 408
BstPAI GACNNNNGTC 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 353
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 4 cut(s) 270, 325, 364, 386
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 6 cut(s) 88, 156, 174, 202, 375, 442
Cac8I GCNNGC 1 cut(s) 382
CciI TCATGA 1 cut(s) 471
CfoI GCGC 3 cut(s) 59, 92, 404
CseI GACGC 1 cut(s) 93
CviAII CATG 2 cut(s) 78, 472
CviJI RGCY 8 cut(s) 137, 283, 338, 377, 384, 399, 419, 478
CviKI_1 RGCY 8 cut(s) 137, 283, 338, 377, 384, 399, 419, 478
DdeI CTNAG 1 cut(s) 60
DpnI GATC 5 cut(s) 180, 185, 256, 319, 441
DpnII GATC 5 cut(s) 178, 183, 254, 317, 439
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 386
Eco53kI GAGCTC 1 cut(s) 384
Eco88I CYCGRG 3 cut(s) 250, 313, 443
Eco91I GGTNACC 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 384
EcoO65I GGTNACC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 386
FaeI CATG 2 cut(s) 81, 475
FaiI YATR 4 cut(s) 11, 79, 452, 473
FatI CATG 2 cut(s) 77, 471
Fnu4HI GCNGC 5 cut(s) 135, 284, 339, 378, 400
FokI GGATG 6 cut(s) 95, 163, 181, 209, 382, 449
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 5 cut(s) 135, 284, 339, 378, 400
FspBI CTAG 2 cut(s) 159, 236
FspI TGCGCA 1 cut(s) 403
GlaI GCGC 3 cut(s) 58, 91, 403
GluI GCNGC 5 cut(s) 135, 284, 339, 378, 400
GsaI CCCAGC 1 cut(s) 53
HaeII RGCGCY 2 cut(s) 60, 93
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 287
HgaI GACGC 1 cut(s) 93
HhaI GCGC 3 cut(s) 59, 92, 404
Hin1II CATG 2 cut(s) 81, 475
Hin6I GCGC 3 cut(s) 57, 90, 402
HinP1I GCGC 3 cut(s) 57, 90, 402
HinfI GANTC 2 cut(s) 191, 323
HpaII CCGG 1 cut(s) 287
HphI GGTGA 2 cut(s) 131, 284
Hpy188I TCNGA 5 cut(s) 183, 196, 322, 388, 466
Hpy188III TCNNGA 4 cut(s) 252, 315, 367, 472
Hpy99I CGWCG 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 127, 146
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 152, 408
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 2 cut(s) 81, 475
HspAI GCGC 3 cut(s) 57, 90, 402
Kzo9I GATC 5 cut(s) 178, 183, 254, 317, 439
LmnI GCTCC 1 cut(s) 483
LpnPI CCDG 6 cut(s) 35, 132, 300, 372, 413, 418
Lsp1109I GCAGC 4 cut(s) 270, 325, 364, 386
LweI GCATC 2 cut(s) 121, 164
MaeI CTAG 2 cut(s) 159, 236
MaeIII GTNAC 1 cut(s) 353
MalI GATC 5 cut(s) 180, 185, 256, 319, 441
MboI GATC 5 cut(s) 178, 183, 254, 317, 439
MboII GAAGA 4 cut(s) 28, 31, 233, 425
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 2 cut(s) 455, 486
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 9 cut(s) 55, 148, 259, 273, 312, 322, 479, 484, 491
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 143, 152, 408
NdeII GATC 5 cut(s) 178, 183, 254, 317, 439
NlaIII CATG 2 cut(s) 81, 475
NsbI TGCGCA 1 cut(s) 403
PagI TCATGA 1 cut(s) 471
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 5 cut(s) 136, 285, 340, 379, 401
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 386
PspEI GGTNACC 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 386
SatI GCNGC 5 cut(s) 135, 284, 339, 378, 400
Sau3AI GATC 5 cut(s) 178, 183, 254, 317, 439
SchI GAGTC 1 cut(s) 317
SduI GDGCHC 1 cut(s) 386
SetI ASST 9 cut(s) 164, 210, 251, 340, 386, 421, 471, 480, 495
SfaNI GCATC 2 cut(s) 121, 164
SmiMI CAYNNNNRTG 1 cut(s) 160
Sse9I AATT 2 cut(s) 455, 486
SsiI CCGC 5 cut(s) 65, 102, 134, 166, 299
SspMI CTAG 2 cut(s) 159, 236
SstI GAGCTC 1 cut(s) 386
TaqI TCGA 3 cut(s) 114, 201, 421
TasI AATT 2 cut(s) 455, 486
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 191
TseI GCWGC 4 cut(s) 283, 338, 377, 399
TspDTI ATGAA 3 cut(s) 31, 66, 488
XapI RAATTY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XspI CTAG 2 cut(s) 159, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.