Rh5CG160600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000576
Physical Location & Seq
Forward (+)
14780397 .. 14780585
189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG160600.1

Sequence Viewer

Length: 189 bp
ATGGCGGTTATGACAGATTTTGGTCTGCTTATTCTCTTCCTCGTTGCGCTGGGTAGCGCTGAGGCTGTGTTGATGTCGGGGGTTAGGGGCGCTGTTGGATCTGCGTCCAAGCTCGACGGTGAAGTGCAAGATGCGGCCTCGTTTACAGGGATGGCATCTAGGTGGCGGATGAGTGGTGATCCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.35

Weight (kDa)

4.53

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 134, 166
AclWI GGATC 2 cut(s) 106, 173
AfeI AGCGCT 1 cut(s) 58
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 2 cut(s) 106, 173
Aor51HI AGCGCT 1 cut(s) 58
AoxI GGCC 1 cut(s) 135
AspLEI GCGC 3 cut(s) 49, 59, 92
AsuHPI GGTGA 2 cut(s) 131, 188
BbvCI CCTCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 145
BfaI CTAG 1 cut(s) 159
BfoI RGCGCY 2 cut(s) 60, 93
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmsI GCATC 2 cut(s) 121, 164
Bpu10I CCTNAGC 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 181
BseGI GGATG 2 cut(s) 156, 174
BseMII CTCAG 1 cut(s) 51
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 182
BsnI GGCC 1 cut(s) 137
Bsp143I GATC 2 cut(s) 98, 178
BspACI CCGC 3 cut(s) 5, 134, 166
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 52
BspPI GGATC 2 cut(s) 106, 173
BssMI GATC 2 cut(s) 98, 178
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 156, 174
BstH2I RGCGCY 2 cut(s) 60, 93
BstHHI GCGC 3 cut(s) 49, 59, 92
BstKTI GATC 2 cut(s) 101, 181
BstMBI GATC 2 cut(s) 98, 178
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 2 cut(s) 156, 174
CfoI GCGC 3 cut(s) 49, 59, 92
CseI GACGC 1 cut(s) 93
CviJI RGCY 3 cut(s) 65, 112, 137
CviKI_1 RGCY 3 cut(s) 65, 112, 137
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 100, 180
DpnII GATC 2 cut(s) 98, 178
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 181
Eco47III AGCGCT 1 cut(s) 58
FaiI YATR 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 2 cut(s) 163, 181
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 159
GlaI GCGC 3 cut(s) 48, 58, 91
GluI GCNGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 53
HaeII RGCGCY 2 cut(s) 60, 93
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 182
HgaI GACGC 1 cut(s) 93
HhaI GCGC 3 cut(s) 49, 59, 92
Hin6I GCGC 3 cut(s) 47, 57, 90
HinP1I GCGC 3 cut(s) 47, 57, 90
HpaII CCGG 1 cut(s) 182
HphI GGTGA 2 cut(s) 131, 188
Hpy166II GTNNAC 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 144
Hpy99I CGWCG 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 60
HspAI GCGC 3 cut(s) 47, 57, 90
Kzo9I GATC 2 cut(s) 98, 178
LpnPI CCDG 2 cut(s) 35, 132
LweI GCATC 2 cut(s) 121, 164
MaeI CTAG 1 cut(s) 159
MalI GATC 2 cut(s) 100, 180
MboI GATC 2 cut(s) 98, 178
MboII GAAGA 1 cut(s) 28
MflI RGATCY 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 3 cut(s) 50, 55, 148
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 1 cut(s) 182
NdeII GATC 2 cut(s) 98, 178
PkrI GCNGC 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 160
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 98, 178
SetI ASST 2 cut(s) 114, 164
SfaNI GCATC 2 cut(s) 121, 164
SgeI CNNG 9 cut(s) 53, 62, 90, 121, 125, 140, 151, 159, 171
SmiMI CAYNNNNRTG 1 cut(s) 160
SsiI CCGC 3 cut(s) 5, 134, 166
SspMI CTAG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 114
TauI GCSGC 1 cut(s) 137
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.