Rh1BG076300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000576
Physical Location & Seq
Reverse (-)
11769921 .. 11770795
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG076300.1

Sequence Viewer

Length: 417 bp
ATGTCCAGAATATTTGACAAGGAGTTTGGTGCCTTTTGGTCGACGGAGGTGGAAGGGTGGAGGGCCGCACTTCGAGAAGTTGCGGATCTGGCAGGGATGAATTTGCGAAATCAAGCTGATGGCGCTCTGCTAGGGTTTCGAAATCCTCTTCCTTTGGGCAGTGGATTTTCGCATTCTTGCTGTTGCTCGTCAATGGTGGTGATGGCAGATTTTGGTCTGCTTATTCTCTTCTTGATTGTTTTGGGGGACGCGGAGGTTGTGTTGAGTTCGGGGGTTGGAGGCGCTGTTGTTTCTGCGTCCAAGCTCAATGGTGAAGTAAAAGATGCGGCCTCGTGGGTGGGGATGGCATCTTGCTGGCAGATTAGCAACGATCCAGTCTTGGTTTGGTCAAGATCGGATCAGACAGGTCGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.74

Weight (kDa)

4.81

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 41
AccII CGCG 1 cut(s) 251
AciI CCGC 4 cut(s) 66, 83, 251, 326
AclWI GGATC 3 cut(s) 93, 365, 405
AcsI RAATTY 1 cut(s) 100
AluBI AGCT 2 cut(s) 116, 304
AluI AGCT 2 cut(s) 116, 304
AlwI GGATC 3 cut(s) 93, 365, 405
AoxI GGCC 2 cut(s) 63, 327
ApoI RAATTY 1 cut(s) 100
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspLEI GCGC 2 cut(s) 125, 284
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 2 cut(s) 211, 323
AsuII TTCGAA 1 cut(s) 139
BanI GGYRCC 1 cut(s) 29
BauI CACGAG 1 cut(s) 331
BccI CCATC 3 cut(s) 113, 196, 337
BfaI CTAG 1 cut(s) 131
BfoI RGCGCY 2 cut(s) 126, 285
BisI GCNGC 2 cut(s) 66, 327
BlsI GCNGC 2 cut(s) 67, 328
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 31
BmsI GCATC 2 cut(s) 313, 356
Bpu14I TTCGAA 1 cut(s) 139
BsaXI ACNNNNNCTCC 4 cut(s) 245, 270, 275, 300
Bse1I ACTGG 1 cut(s) 374
BseGI GGATG 2 cut(s) 102, 348
BseNI ACTGG 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 2 cut(s) 65, 329
BshNI GGYRCC 1 cut(s) 29
BslFI GGGAC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 2 cut(s) 65, 329
Bsp119I TTCGAA 1 cut(s) 139
Bsp143I GATC 4 cut(s) 85, 370, 392, 397
BspACI CCGC 4 cut(s) 66, 83, 251, 326
BspANI GGCC 2 cut(s) 65, 329
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 31
BspPI GGATC 3 cut(s) 93, 365, 405
BspT104I TTCGAA 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 374
BssMI GATC 4 cut(s) 85, 370, 392, 397
BssSI CACGAG 1 cut(s) 331
Bst2BI CACGAG 1 cut(s) 331
Bst6I CTCTTC 2 cut(s) 153, 233
BstBI TTCGAA 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 356
BstF5I GGATG 2 cut(s) 102, 348
BstFNI CGCG 1 cut(s) 251
BstH2I RGCGCY 2 cut(s) 126, 285
BstHHI GCGC 2 cut(s) 125, 284
BstKTI GATC 4 cut(s) 88, 373, 395, 400
BstMBI GATC 4 cut(s) 85, 370, 392, 397
BstMWI GCNNNNNNNGC 2 cut(s) 89, 122
BstUI CGCG 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 2 cut(s) 65, 329
BtsCI GGATG 2 cut(s) 102, 348
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 356
CfoI GCGC 2 cut(s) 125, 284
Cfr13I GGNCC 1 cut(s) 63
CseI GACGC 2 cut(s) 257, 285
CviJI RGCY 4 cut(s) 65, 116, 304, 329
CviKI_1 RGCY 4 cut(s) 65, 116, 304, 329
DpnI GATC 4 cut(s) 87, 372, 394, 399
DpnII GATC 4 cut(s) 85, 370, 392, 397
Eam1104I CTCTTC 2 cut(s) 153, 233
EarI CTCTTC 2 cut(s) 153, 233
FaqI GGGAC 1 cut(s) 260
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 2 cut(s) 66, 327
FokI GGATG 2 cut(s) 109, 355
Fsp4HI GCNGC 2 cut(s) 66, 327
FspBI CTAG 1 cut(s) 131
GlaI GCGC 2 cut(s) 124, 283
GluI GCNGC 2 cut(s) 66, 327
HaeII RGCGCY 2 cut(s) 126, 285
HaeIII GGCC 2 cut(s) 65, 329
HgaI GACGC 2 cut(s) 257, 285
HhaI GCGC 2 cut(s) 125, 284
Hin6I GCGC 2 cut(s) 123, 282
HinP1I GCGC 2 cut(s) 123, 282
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 1 cut(s) 411
HphI GGTGA 2 cut(s) 211, 323
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 3 cut(s) 397, 402, 416
Hpy188III TCNNGA 4 cut(s) 6, 74, 232, 390
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 122
HspAI GCGC 2 cut(s) 123, 282
Kzo9I GATC 4 cut(s) 85, 370, 392, 397
LpnPI CCDG 6 cut(s) 19, 74, 78, 340, 387, 390
LweI GCATC 2 cut(s) 313, 356
MaeI CTAG 1 cut(s) 131
MalI GATC 4 cut(s) 87, 372, 394, 399
MboI GATC 4 cut(s) 85, 370, 392, 397
MboII GAAGA 2 cut(s) 140, 220
MflI RGATCY 1 cut(s) 85
MluCI AATT 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 6 cut(s) 40, 54, 156, 247, 272, 340
Mva1269I GAATGC 1 cut(s) 172
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 89, 122
NdeII GATC 4 cut(s) 85, 370, 392, 397
NlaIV GGNNCC 1 cut(s) 31
NspV TTCGAA 1 cut(s) 139
PctI GAATGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 411
PkrI GCNGC 2 cut(s) 67, 328
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 63
PsuI RGATCY 1 cut(s) 85
SalI GTCGAC 1 cut(s) 40
SatI GCNGC 2 cut(s) 66, 327
Sau3AI GATC 4 cut(s) 85, 370, 392, 397
Sau96I GGNCC 1 cut(s) 63
SetI ASST 5 cut(s) 51, 118, 258, 306, 409
SfaNI GCATC 2 cut(s) 313, 356
SfuI TTCGAA 1 cut(s) 139
Sse9I AATT 1 cut(s) 100
SsiI CCGC 4 cut(s) 66, 83, 251, 326
SspI AATATT 1 cut(s) 12
SspMI CTAG 1 cut(s) 131
TaqI TCGA 4 cut(s) 41, 73, 139, 409
TasI AATT 1 cut(s) 100
TauI GCSGC 2 cut(s) 68, 329
TfiI GAWTC 1 cut(s) 411
TscAI CASTG 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 113
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 1 cut(s) 166
XapI RAATTY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 381
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.