Rh3DG111600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000576
Physical Location & Seq
Forward (+)
9143381 .. 9144561
1181 bp
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UTR
Exon/CDS
Intron
Rh3DG111600.1

Sequence Viewer

Length: 378 bp
ATGAATTTGGGTCTGGGTCTGGGTCTGCTTATTATATTCTTCATTGCGCTAGGTGGCACTGAGGGTATGTTGATTTCGTGGGATGGGGGCACGGTTGTTTCTACATCCAAGCCTGATGGTGAAGTGAAAGATGCAACCTTGTTTGCAGGGATGGCATCTAGGTGGCAGATGAGCGGCGATCAGTTCTTGGGTTGGTCTAGATCTATTTGGAAGGTTCGTTTCCTATCACGTGCTGATTTTTGGAGTGCTGGTGATCTTGTTGTCGTGGAGGGTGATGATGTGATGGTTTGCCCGACCTCGAGGACTGCTACTGCTGATGGTGGTCCGAGGCTGCCGGAGGTGAGGCCGGCTTTACTTCCCTCTGACTTGGACCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.37

Weight (kDa)

4.48

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 174
AciI CCGC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 4
AcvI CACGTG 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 331
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 323, 370
AsuHPI GGTGA 4 cut(s) 131, 263, 284, 352
AvaI CYCGRG 1 cut(s) 298
AvaII GGWCC 2 cut(s) 323, 370
BaeGI GKGCMC 1 cut(s) 92
BbrPI CACGTG 1 cut(s) 230
BbvI GCAGC 1 cut(s) 318
BccI CCATC 5 cut(s) 77, 110, 145, 277, 311
BfaI CTAG 3 cut(s) 50, 159, 198
BglII AGATCT 1 cut(s) 200
BisI GCNGC 2 cut(s) 175, 332
BlsI GCNGC 2 cut(s) 176, 333
Bme18I GGWCC 2 cut(s) 323, 370
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 323, 370
BmiI GGNNCC 1 cut(s) 372
BmsI GCATC 2 cut(s) 121, 164
BsaAI YACGTR 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bse118I RCCGGY 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 3 cut(s) 88, 104, 156
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 1 cut(s) 318
BshFI GGCC 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 2 cut(s) 335, 347
BsnI GGCC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 178, 200, 253
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 372
BsrBI CCGCTC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 3 cut(s) 178, 200, 253
Bst4CI ACNGT 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 60, 375
BstF5I GGATG 3 cut(s) 88, 104, 156
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 3 cut(s) 181, 203, 256
BstMBI GATC 3 cut(s) 178, 200, 253
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSLI GKGCMC 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 3 cut(s) 88, 104, 156
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 323, 370
CviJI RGCY 4 cut(s) 112, 331, 346, 350
CviKI_1 RGCY 4 cut(s) 112, 331, 346, 350
DdeI CTNAG 2 cut(s) 60, 375
DpnI GATC 3 cut(s) 180, 202, 255
DpnII GATC 3 cut(s) 178, 200, 253
Eco47I GGWCC 2 cut(s) 323, 370
Eco72I CACGTG 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 298
FaiI YATR 2 cut(s) 35, 68
Fnu4HI GCNGC 2 cut(s) 175, 332
FokI GGATG 3 cut(s) 91, 95, 163
Fsp4HI GCNGC 2 cut(s) 175, 332
FspBI CTAG 3 cut(s) 50, 159, 198
GlaI GCGC 1 cut(s) 48
GluI GCNGC 2 cut(s) 175, 332
HaeIII GGCC 1 cut(s) 346
HapII CCGG 2 cut(s) 335, 347
HhaI GCGC 1 cut(s) 49
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HpaII CCGG 2 cut(s) 335, 347
HphI GGTGA 4 cut(s) 131, 263, 284, 352
Hpy188I TCNGA 2 cut(s) 327, 364
Hpy188III TCNNGA 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 134, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 60, 375
HpySE526I ACGT 1 cut(s) 229
HspAI GCGC 1 cut(s) 47
KroI GCCGGC 1 cut(s) 346
KroNI GCCGGC 1 cut(s) 348
Kzo9I GATC 3 cut(s) 178, 200, 253
LpnPI CCDG 6 cut(s) 5, 126, 132, 234, 348, 360
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 2 cut(s) 121, 164
MaeI CTAG 3 cut(s) 50, 159, 198
MaeII ACGT 1 cut(s) 229
MalI GATC 3 cut(s) 180, 202, 255
MbiI CCGCTC 1 cut(s) 174
MboI GATC 3 cut(s) 178, 200, 253
MboII GAAGA 1 cut(s) 31
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 1 cut(s) 4
MnlI CCTC 8 cut(s) 55, 262, 294, 307, 321, 331, 336, 370
MroNI GCCGGC 1 cut(s) 346
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 2 cut(s) 335, 347
MwoI GCNNNNNNNGC 1 cut(s) 152
NaeI GCCGGC 1 cut(s) 348
NdeII GATC 3 cut(s) 178, 200, 253
NgoMIV GCCGGC 1 cut(s) 346
NlaIV GGNNCC 1 cut(s) 372
PaeR7I CTCGAG 1 cut(s) 298
PdiI GCCGGC 1 cut(s) 348
PkrI GCNGC 2 cut(s) 176, 333
PmaCI CACGTG 1 cut(s) 230
PmlI CACGTG 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 230
PspCI CACGTG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 2 cut(s) 323, 370
PspXI VCTCGAGB 1 cut(s) 298
PsuI RGATCY 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 160
SatI GCNGC 2 cut(s) 175, 332
Sau3AI GATC 3 cut(s) 178, 200, 253
Sau96I GGNCC 2 cut(s) 323, 370
SduI GDGCHC 1 cut(s) 92
SetI ASST 7 cut(s) 55, 140, 164, 216, 232, 299, 342
SfaNI GCATC 2 cut(s) 121, 164
Sfr274I CTCGAG 1 cut(s) 298
SinI GGWCC 2 cut(s) 323, 370
SlaI CTCGAG 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 1 cut(s) 4
SsiI CCGC 1 cut(s) 174
SspMI CTAG 3 cut(s) 50, 159, 198
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 299
TasI AATT 1 cut(s) 4
TauI GCSGC 1 cut(s) 177
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 17, 31
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 323, 370
XapI RAATTY 1 cut(s) 4
XbaI TCTAGA 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 298
XspI CTAG 3 cut(s) 50, 159, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.