Rh2CG515200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000576
Physical Location & Seq
Reverse (-)
68901620 .. 68904271
2652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG515200.1

Sequence Viewer

Length: 810 bp
ATGGCGGCGGCCATAGATGAGTTTAGGGCTGTGTATGTGGACGGTTTCACCAACTCTGACATGGTAATCGTCGCTCTGATCATTCTGAAAAAAGGTTTTGATAGACATGCGGTGGACGGGATCCGCAATACGTATGAAGATTTTTATTGCTCCTTGAACTGCCGGAGCTCGAGGAGGGGGAATCGTACCTACTGTTGTCCTTCATCCTCGAGTGCCTCTTTGGAGGGGAGTTTGGGCGATGTTGAGGCTGTGTTGAGTTCGGGGTTTGCAGGCGATGTTGTTTCTGCATCTGCATTTGATAGTGATGTGACAGATGCGGCTTTGAGGCTGGGGATGGCATCTAGATGGCAATTGAGCAGCGATTCGGTCTTGGTTTGGTCAAGATCGGATCGGAAAGGTTGCTTCCGATCGAGCCCACGGGACGTTGGTGTACCTGTTACAGGTGATGATCGTTGGCATGTCAACGATCTTGCTATTCCCGTTGGTGATGGAATGCTGGTTTGCGTGGATTCAGGGACTACTGGTGGTGGTAGTGGTGGTGCTCATGGGTATATCAGCTGCAAGGATGGAAGCAAGCTTCTGGAGATGTGGGCGAATCTGTTTTTCTCCGACCCAGTTAGCTCGTTGGTGGGGCTGTTGGCGTGGCTCTGCTCATCGAAGAAGATTACCTCTGGGGATACTGATTGGTGCAGCAACGAGGTCTACCACGTCGGCGATAGTGGAGGCTTGCTGGTTGGCGGCGAAGGTGTGCTGGTTTTGTGGGGTGGATCTTGTGGGGTGCCCTTAGCAATTTTTGCTTGGACCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

28.43

Weight (kDa)

4.76

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 778
AccI GTMKAC 1 cut(s) 702
AciI CCGC 6 cut(s) 5, 8, 110, 124, 317, 738
AclWI GGATC 4 cut(s) 115, 128, 396, 775
AcoI YGGCCR 1 cut(s) 9
AfaI GTAC 2 cut(s) 187, 432
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 1 cut(s) 157
AjiI CACGTC 1 cut(s) 709
AluBI AGCT 4 cut(s) 168, 558, 577, 621
AluI AGCT 4 cut(s) 168, 558, 577, 621
Alw21I GWGCWC 2 cut(s) 170, 544
AlwI GGATC 4 cut(s) 115, 128, 396, 775
Ama87I CYCGRG 2 cut(s) 169, 208
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 357, 558, 690
AspS9I GGNCC 1 cut(s) 801
AsuHPI GGTGA 3 cut(s) 40, 455, 497
AvaI CYCGRG 2 cut(s) 169, 208
AvaII GGWCC 1 cut(s) 801
BaeGI GKGCMC 1 cut(s) 783
BamHI GGATCC 1 cut(s) 120
BanI GGYRCC 1 cut(s) 778
BanII GRGCYC 2 cut(s) 170, 416
Bbv12I GWGCWC 2 cut(s) 170, 544
BbvI GCAGC 3 cut(s) 369, 545, 702
BccI CCATC 4 cut(s) 328, 339, 482, 560
BciVI GTATCC 1 cut(s) 670
BclI TGATCA 1 cut(s) 78
BfaI CTAG 2 cut(s) 342, 808
BfuI GTATCC 1 cut(s) 670
BisI GCNGC 7 cut(s) 6, 9, 318, 358, 559, 691, 739
BlsI GCNGC 7 cut(s) 7, 10, 319, 359, 560, 692, 740
Bme18I GGWCC 1 cut(s) 801
BmeT110I CYCGRG 2 cut(s) 169, 208
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 1 cut(s) 801
BmiI GGNNCC 3 cut(s) 122, 780, 803
BmrI ACTGGG 1 cut(s) 608
BmsI GCATC 3 cut(s) 296, 304, 347
BmuI ACTGGG 1 cut(s) 608
BpmI CTGGAG 1 cut(s) 602
Bpu10I CCTNAGC 1 cut(s) 784
BsaAI YACGTR 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 416
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 526, 614
BseDI CCNNGG 1 cut(s) 416
BseGI GGATG 3 cut(s) 203, 339, 571
BseLI CCNNNNNNNGG 1 cut(s) 440
BseNI ACTGG 2 cut(s) 526, 614
BseRI GAGGAG 1 cut(s) 187
BseSI GKGCMC 1 cut(s) 783
BseXI GCAGC 3 cut(s) 369, 545, 702
BseYI CCCAGC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 709
Bsh1285I CGRYCG 1 cut(s) 410
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 778
BsiEI CGRYCG 1 cut(s) 410
BsiHKAI GWGCWC 2 cut(s) 170, 544
BsiHKCI CYCGRG 2 cut(s) 169, 208
BsiSI CCGG 1 cut(s) 163
BslFI GGGAC 2 cut(s) 434, 529
BslI CCNNNNNNNGG 1 cut(s) 440
BsmFI GGGAC 2 cut(s) 434, 529
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 1 cut(s) 11
BsoBI CYCGRG 2 cut(s) 169, 208
Bsp1286I GDGCHC 4 cut(s) 170, 416, 544, 783
Bsp143I GATC 8 cut(s) 78, 120, 383, 388, 407, 448, 466, 767
BspACI CCGC 6 cut(s) 5, 8, 110, 124, 317, 738
BspANI GGCC 1 cut(s) 11
BspLI GGNNCC 3 cut(s) 122, 780, 803
BspPI GGATC 4 cut(s) 115, 128, 396, 775
BspT107I GGYRCC 1 cut(s) 778
BsrI ACTGG 2 cut(s) 526, 614
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 8 cut(s) 78, 120, 383, 388, 407, 448, 466, 767
Bst4CI ACNGT 2 cut(s) 44, 194
BstAPI GCANNNNNTGC 1 cut(s) 794
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 271, 575, 728
BstDEI CTNAG 1 cut(s) 784
BstDSI CCRYGG 1 cut(s) 416
BstENI CCTNNNNNAGG 1 cut(s) 438
BstF5I GGATG 3 cut(s) 203, 339, 571
BstKTI GATC 8 cut(s) 81, 123, 386, 391, 410, 451, 469, 770
BstMBI GATC 8 cut(s) 78, 120, 383, 388, 407, 448, 466, 767
BstMCI CGRYCG 1 cut(s) 410
BstMWI GCNNNNNNNGC 1 cut(s) 794
BstNSI RCATGY 2 cut(s) 110, 461
BstSLI GKGCMC 1 cut(s) 783
BstSNI TACGTA 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 369, 545, 702
BstX2I RGATCY 2 cut(s) 120, 767
BstYI RGATCY 2 cut(s) 120, 767
BsuI GTATCC 1 cut(s) 670
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 416
BtgZI GCGATG 2 cut(s) 252, 288
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 3 cut(s) 203, 339, 571
Cac8I GCNNGC 3 cut(s) 271, 575, 728
Cfr13I GGNCC 1 cut(s) 801
Csp6I GTAC 2 cut(s) 186, 431
CviAII CATG 4 cut(s) 61, 107, 458, 545
CviQI GTAC 2 cut(s) 186, 431
DdeI CTNAG 1 cut(s) 784
DpnI GATC 8 cut(s) 80, 122, 385, 390, 409, 450, 468, 769
DpnII GATC 8 cut(s) 78, 120, 383, 388, 407, 448, 466, 767
EaeI YGGCCR 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 168
Eco105I TACGTA 1 cut(s) 132
Eco24I GRGCYC 2 cut(s) 170, 416
Eco47I GGWCC 1 cut(s) 801
Eco53kI GAGCTC 1 cut(s) 168
Eco88I CYCGRG 2 cut(s) 169, 208
EcoICRI GAGCTC 1 cut(s) 168
EcoNI CCTNNNNNAGG 1 cut(s) 438
EcoT38I GRGCYC 2 cut(s) 170, 416
FaeI CATG 4 cut(s) 64, 110, 461, 548
FaiI YATR 8 cut(s) 14, 36, 62, 108, 135, 459, 546, 552
FaqI GGGAC 2 cut(s) 434, 529
FatI CATG 4 cut(s) 60, 106, 457, 544
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 7 cut(s) 6, 9, 318, 358, 559, 691, 739
FokI GGATG 3 cut(s) 190, 346, 578
FriOI GRGCYC 2 cut(s) 170, 416
Fsp4HI GCNGC 7 cut(s) 6, 9, 318, 358, 559, 691, 739
FspBI CTAG 2 cut(s) 342, 808
GluI GCNGC 7 cut(s) 6, 9, 318, 358, 559, 691, 739
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 163
Hin1II CATG 4 cut(s) 64, 110, 461, 548
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 4 cut(s) 181, 362, 509, 595
HpaII CCGG 1 cut(s) 163
HphI GGTGA 3 cut(s) 40, 455, 497
Hpy166II GTNNAC 5 cut(s) 40, 115, 431, 463, 703
Hpy188I TCNGA 7 cut(s) 58, 78, 87, 388, 393, 407, 610
Hpy188III TCNNGA 3 cut(s) 342, 381, 581
Hpy8I GTNNAC 5 cut(s) 40, 115, 431, 463, 703
Hpy99I CGWCG 2 cut(s) 74, 713
HpyAV CCTTC 2 cut(s) 210, 737
HpyCH4III ACNGT 2 cut(s) 44, 194
HpyCH4IV ACGT 3 cut(s) 131, 423, 708
HpyCH4V TGCA 5 cut(s) 269, 287, 293, 561, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 794
HpyF3I CTNAG 1 cut(s) 784
HpySE526I ACGT 3 cut(s) 131, 423, 708
Hsp92II CATG 4 cut(s) 64, 110, 461, 548
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 8 cut(s) 78, 120, 383, 388, 407, 448, 466, 767
LmnI GCTCC 2 cut(s) 155, 165
Lsp1109I GCAGC 3 cut(s) 369, 545, 702
LweI GCATC 3 cut(s) 296, 304, 347
MaeI CTAG 2 cut(s) 342, 808
MaeII ACGT 3 cut(s) 131, 423, 708
MaeIII GTNAC 2 cut(s) 307, 436
MalI GATC 8 cut(s) 80, 122, 385, 390, 409, 450, 468, 769
MboI GATC 8 cut(s) 78, 120, 383, 388, 407, 448, 466, 767
MboII GAAGA 3 cut(s) 149, 670, 673
MfeI CAATTG 1 cut(s) 350
MflI RGATCY 2 cut(s) 120, 767
MhlI GDGCHC 4 cut(s) 170, 416, 544, 783
MluCI AATT 2 cut(s) 350, 789
MmeI TCCRAC 1 cut(s) 633
MslI CAYNNNNRTG 1 cut(s) 343
MspA1I CMGCKG 1 cut(s) 558
MspI CCGG 1 cut(s) 163
MunI CAATTG 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 498
MwoI GCNNNNNNNGC 1 cut(s) 794
NdeII GATC 8 cut(s) 78, 120, 383, 388, 407, 448, 466, 767
NlaIII CATG 4 cut(s) 64, 110, 461, 548
NlaIV GGNNCC 3 cut(s) 122, 780, 803
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 2 cut(s) 110, 461
PaeR7I CTCGAG 2 cut(s) 169, 208
PctI GAATGC 1 cut(s) 498
PfeI GAWTC 4 cut(s) 181, 362, 509, 595
PkrI GCNGC 7 cut(s) 7, 10, 319, 359, 560, 692, 740
Ple19I CGATCG 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 328
PspN4I GGNNCC 3 cut(s) 122, 780, 803
PspPI GGNCC 1 cut(s) 801
PspXI VCTCGAGB 2 cut(s) 169, 208
PsuI RGATCY 2 cut(s) 120, 767
PvuI CGATCG 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 558
RsaI GTAC 2 cut(s) 187, 432
RsaNI GTAC 2 cut(s) 186, 431
RseI CAYNNNNRTG 1 cut(s) 343
SacI GAGCTC 1 cut(s) 170
SatI GCNGC 7 cut(s) 6, 9, 318, 358, 559, 691, 739
Sau3AI GATC 8 cut(s) 78, 120, 383, 388, 407, 448, 466, 767
Sau96I GGNCC 1 cut(s) 801
SduI GDGCHC 4 cut(s) 170, 416, 544, 783
SfaNI GCATC 3 cut(s) 296, 304, 347
Sfr274I CTCGAG 2 cut(s) 169, 208
SinI GGWCC 1 cut(s) 801
SlaI CTCGAG 2 cut(s) 169, 208
SmiMI CAYNNNNRTG 1 cut(s) 343
SmlI CTYRAG 2 cut(s) 169, 208
SmoI CTYRAG 2 cut(s) 169, 208
SnaBI TACGTA 1 cut(s) 132
Sse9I AATT 2 cut(s) 350, 789
SsiI CCGC 6 cut(s) 5, 8, 110, 124, 317, 738
SspMI CTAG 2 cut(s) 342, 808
SstI GAGCTC 1 cut(s) 170
TaaI ACNGT 2 cut(s) 44, 194
TaiI ACGT 3 cut(s) 134, 426, 711
TaqI TCGA 4 cut(s) 170, 209, 410, 656
TaqII GACCGA 1 cut(s) 355
TasI AATT 2 cut(s) 350, 789
TauI GCSGC 4 cut(s) 8, 11, 320, 741
TfiI GAWTC 4 cut(s) 181, 362, 509, 595
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 3 cut(s) 357, 558, 690
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 2 cut(s) 150, 192
VpaK11BI GGWCC 1 cut(s) 801
XagI CCTNNNNNAGG 1 cut(s) 438
XbaI TCTAGA 1 cut(s) 341
XceI RCATGY 2 cut(s) 110, 461
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XhoI CTCGAG 2 cut(s) 169, 208
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 2 cut(s) 342, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.