Rorug07G0282000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000576
Physical Location & Seq
Reverse (-)
27382608 .. 27385572
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0282000.1

Sequence Viewer

Length: 1395 bp
ATGAAGATGCCAAAGCACGCAGAAGCAAGCTCTGTCTTTGTAGTGGTGACTCATTTTGAGGGCACCTGCTTTGGCGCATTATTTGAAGTAAAATTAGATGGACAAGGTAAAGAAGGTTCAGCAACTCATGAAACCCAACCAGTACTTGAGACTGTATCACGATTCACTACAAAGGATTTGGGTCGCGGAATGTGGAAATTTTGTACCTTGGGTGCCAAGTTATATATTTTGCCAGATGGTGGTCCTGATTTGTTTGACATGGAAGTGTGTTTCCCCAAATGCAGTGGACATATTTTCGACATCAAGACTAGGAAAGTGGTGTCATCATTGAAACCCCCAGCTCCCAAATGGTTTGGAACTCATGTGTCTGCATATGGGAAAATTTACTCTCTTTCAGATCCATATTGCTCATGTGATGTACCAGAGCCGTCTTTTGAGCAGTATGACCCTAGCACTCAGTCTTGGCAGAAGCTGTGGTCTTTTCCATATTCTGAGGAATACGGTAACACAGAGATACAGGGTTATGCTGTTTGTGATGAAATCTTATTGTTTAGTATATGTGGCTGTAAGGAAAACCGTGATTCAGTGTGGGCTTATGATGTAATTAAAAATAAGTGGTGTCCAGTCCAGGTTGAGAATATAGGTTGCTATTTCCGAAGAAGGGCCGTGGTTGTGGAGAAGACTATCTATGCCTTATCAATATTGCACATGGTTGTTGTGGCATTCTCTATTACGAGCAACCAAAATGAGGAAGGGCATATTAGCTATTCAATAGGCTCATTGTTACAGTTGGATTTTCCACAGGTTATAGACTGGAGAAGTGATCAGCATTTGGTTCATTTGGGTAACCTTGTCTTTTATCTTGTCCAGAGTGGCTTCGATGACGAAGTTGATGTTCGCCAACCTCTTTCGATCACCAAATTTGAGATTGTGGGAGGAAGCCAAATCAATATCATAAGTTCAATGCTTCTTGAGGTGGATCTCGGGGATTCTGGGCCATTCCGTGTTCAATTATGCTTCAGGCCAGAGTGGGAGGATGTCACACCCATAGACGAAGAGATTGCTACCTCCATCAACCTTTCAGTGTTGCACCAAGTAATTCCAGTTCCTTACCAAGCTGGAATCACCCCTCTACCTGCATATGAAGTATGTTCCTCATCTCAGCTGCCACCTGAGCCTTCAGAAGTGGCAGAGCAGTTTCAGCAGGTTTCCATCCAGCAAGAGGAAGCTCCTAGTCAGTCCATTCAACAAGTGTCAGTCTCTAGCAAGTCTATGATGTTCCCTCTTCGCCCTGGTAAGGGTACGACTGGCAAAAGGTTTCTAGTCAAGGCAAACCATTTCTTTGCTGAATTAACAGACAAGGATAAACCTAATTTATACTACTGGATTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

464

Amino Acids

52.2

Weight (kDa)

5.08

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly-rich_Ago1 PF12764 363 - 418 1.8e-07 Glycine-rich region of argonaut
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 74
Acc36I ACCTGC 3 cut(s) 74, 1144, 1195
AccB1I GGYRCC 2 cut(s) 62, 212
AccB7I CCANNNNNTGG 1 cut(s) 239
AccII CGCG 1 cut(s) 186
AciI CCGC 1 cut(s) 186
AclWI GGATC 2 cut(s) 392, 987
AcsI RAATTY 3 cut(s) 197, 381, 920
AcuI CTGAAG 2 cut(s) 1003, 1164
AfaI GTAC 4 cut(s) 144, 205, 420, 1303
AfiI CCNNNNNNNGG 6 cut(s) 239, 661, 748, 1222, 1297, 1298
AgsI TTSAA 6 cut(s) 86, 331, 771, 963, 1010, 1247
AjnI CCWGG 2 cut(s) 627, 1291
AluBI AGCT 7 cut(s) 30, 341, 472, 765, 1118, 1165, 1229
AluI AGCT 7 cut(s) 30, 341, 472, 765, 1118, 1165, 1229
Alw26I GTCTC 2 cut(s) 143, 1264
AlwI GGATC 2 cut(s) 392, 987
AlwNI CAGNNNCTG 1 cut(s) 472
Ama87I CYCGRG 1 cut(s) 983
AoxI GGCC 3 cut(s) 663, 995, 1022
ApeKI GCWGC 1 cut(s) 1165
ApoI RAATTY 3 cut(s) 197, 381, 920
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 3 cut(s) 242, 663, 995
AsuHPI GGTGA 3 cut(s) 58, 907, 1117
AvaI CYCGRG 1 cut(s) 983
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 65
BanI GGYRCC 2 cut(s) 62, 212
BbsI GAAGAC 1 cut(s) 686
BbvI GCAGC 1 cut(s) 1152
BccI CCATC 4 cut(s) 92, 230, 1079, 1220
BceAI ACGGC 2 cut(s) 412, 650
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BciT130I CCWGG 2 cut(s) 629, 1293
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 2 cut(s) 143, 1264
BfaI CTAG 5 cut(s) 309, 450, 1233, 1263, 1322
BfuAI ACCTGC 3 cut(s) 74, 1144, 1195
BisI GCNGC 1 cut(s) 1166
BlsI GCNGC 1 cut(s) 1167
BmcAI AGTACT 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 629, 1293
Bme18I GGWCC 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 983
BmgT120I GGNCC 3 cut(s) 242, 663, 995
BmiI GGNNCC 2 cut(s) 64, 214
BmrFI CCNGG 2 cut(s) 629, 1293
BpiI GAAGAC 1 cut(s) 686
BpmI CTGGAG 1 cut(s) 835
Bpu10I CCTNAGC 1 cut(s) 1173
BpuEI CTTGAG 2 cut(s) 167, 992
BsaJI CCNNGG 3 cut(s) 207, 666, 1291
Bsc4I CCNNNNNNNGG 6 cut(s) 239, 661, 748, 1222, 1297, 1298
Bse1I ACTGG 6 cut(s) 140, 623, 818, 1103, 1312, 1388
BseBI CCWGG 2 cut(s) 629, 1293
BseDI CCNNGG 3 cut(s) 207, 666, 1291
BseGI GGATG 2 cut(s) 1042, 1212
BseLI CCNNNNNNNGG 6 cut(s) 239, 661, 748, 1222, 1297, 1298
BseMII CTCAG 4 cut(s) 470, 483, 1164, 1175
BseNI ACTGG 6 cut(s) 140, 623, 818, 1103, 1312, 1388
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 1 cut(s) 1152
BseYI CCCAGC 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 665, 997, 1024
BshNI GGYRCC 2 cut(s) 62, 212
BsiHKCI CYCGRG 1 cut(s) 983
BslI CCNNNNNNNGG 6 cut(s) 239, 661, 748, 1222, 1297, 1298
BsmAI GTCTC 2 cut(s) 143, 1264
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 3 cut(s) 665, 997, 1024
BsoBI CYCGRG 1 cut(s) 983
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 4 cut(s) 397, 823, 912, 979
BspACI CCGC 1 cut(s) 186
BspANI GGCC 3 cut(s) 665, 997, 1024
BspCNI CTCAG 4 cut(s) 469, 484, 1165, 1174
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 64, 214
BspMI ACCTGC 3 cut(s) 74, 1144, 1195
BspPI GGATC 2 cut(s) 392, 987
BspT107I GGYRCC 2 cut(s) 62, 212
BsrI ACTGG 6 cut(s) 140, 623, 818, 1103, 1312, 1388
BssECI CCNNGG 3 cut(s) 207, 666, 1291
BssMI GATC 4 cut(s) 397, 823, 912, 979
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 629, 1293
Bst4CI ACNGT 4 cut(s) 154, 503, 578, 789
Bst6I CTCTTC 2 cut(s) 1050, 1290
BstC8I GCNNGC 2 cut(s) 18, 28
BstDEI CTNAG 4 cut(s) 456, 492, 1161, 1173
BstDSI CCRYGG 1 cut(s) 666
BstEII GGTNACC 1 cut(s) 845
BstF5I GGATG 2 cut(s) 1042, 1212
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 400, 826, 915, 982
BstMAI GTCTC 2 cut(s) 143, 1264
BstMBI GATC 4 cut(s) 397, 823, 912, 979
BstMWI GCNNNNNNNGC 2 cut(s) 1174, 1201
BstNI CCWGG 2 cut(s) 629, 1293
BstPI GGTNACC 1 cut(s) 845
BstSCI CCNGG 2 cut(s) 627, 1291
BstSLI GKGCMC 1 cut(s) 65
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 1152
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 2 cut(s) 397, 979
BstYI RGATCY 2 cut(s) 397, 979
BsuRI GGCC 3 cut(s) 665, 997, 1024
BtgI CCRYGG 1 cut(s) 666
BtsCI GGATG 2 cut(s) 1042, 1212
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 3 cut(s) 289, 591, 1089
BveI ACCTGC 3 cut(s) 74, 1144, 1195
Cac8I GCNNGC 2 cut(s) 18, 28
CaiI CAGNNNCTG 1 cut(s) 472
CciI TCATGA 1 cut(s) 127
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 3 cut(s) 242, 663, 995
Csp6I GTAC 4 cut(s) 143, 204, 419, 1302
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 5 cut(s) 128, 259, 362, 411, 709
CviQI GTAC 4 cut(s) 143, 204, 419, 1302
DdeI CTNAG 4 cut(s) 456, 492, 1161, 1173
DpnI GATC 4 cut(s) 399, 825, 914, 981
DpnII GATC 4 cut(s) 397, 823, 912, 979
Eam1104I CTCTTC 2 cut(s) 1050, 1290
EarI CTCTTC 2 cut(s) 1050, 1290
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 1003, 1164
Eco88I CYCGRG 1 cut(s) 983
Eco91I GGTNACC 1 cut(s) 845
EcoO65I GGTNACC 1 cut(s) 845
EcoRII CCWGG 2 cut(s) 627, 1291
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 5 cut(s) 131, 262, 365, 414, 712
FatI CATG 5 cut(s) 127, 258, 361, 410, 708
FauNDI CATATG 2 cut(s) 373, 1141
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 1 cut(s) 1166
FokI GGATG 2 cut(s) 1049, 1199
Fsp4HI GCNGC 1 cut(s) 1166
FspBI CTAG 5 cut(s) 309, 450, 1233, 1263, 1322
GlaI GCGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 1166
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 835
HaeIII GGCC 3 cut(s) 665, 997, 1024
HhaI GCGC 1 cut(s) 77
Hin1II CATG 5 cut(s) 131, 262, 365, 414, 712
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 5 cut(s) 49, 162, 581, 989, 1122
HphI GGTGA 3 cut(s) 58, 907, 1117
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 4 cut(s) 397, 493, 656, 1183
Hpy188III TCNNGA 6 cut(s) 128, 159, 245, 304, 868, 971
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 4 cut(s) 107, 654, 746, 1188
HpyCH4III ACNGT 4 cut(s) 154, 503, 578, 789
HpyCH4V TGCA 5 cut(s) 282, 371, 706, 1090, 1139
HpyF10VI GCNNNNNNNGC 2 cut(s) 1174, 1201
HpyF3I CTNAG 4 cut(s) 456, 492, 1161, 1173
Hsp92II CATG 5 cut(s) 131, 262, 365, 414, 712
HspAI GCGC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 4 cut(s) 397, 823, 912, 979
LmnI GCTCC 2 cut(s) 346, 1234
Lsp1109I GCAGC 1 cut(s) 1152
MaeI CTAG 5 cut(s) 309, 450, 1233, 1263, 1322
MaeIII GTNAC 5 cut(s) 46, 503, 783, 845, 1039
MalI GATC 4 cut(s) 399, 825, 914, 981
MboI GATC 4 cut(s) 397, 823, 912, 979
MboII GAAGA 5 cut(s) 16, 669, 691, 1067, 1277
MflI RGATCY 2 cut(s) 397, 979
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 9 cut(s) 92, 197, 381, 603, 920, 1010, 1098, 1349, 1372
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 771
MseI TTAA 2 cut(s) 606, 1352
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 1165
MspR9I CCNGG 2 cut(s) 629, 1293
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 2 cut(s) 629, 1293
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 1174, 1201
NdeI CATATG 2 cut(s) 373, 1141
NdeII GATC 4 cut(s) 397, 823, 912, 979
NlaIII CATG 5 cut(s) 131, 262, 365, 414, 712
NlaIV GGNNCC 2 cut(s) 64, 214
NmuCI GTSAC 2 cut(s) 46, 1039
PagI TCATGA 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 74
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 4 cut(s) 162, 581, 989, 1122
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 1 cut(s) 1167
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Psp6I CCWGG 2 cut(s) 627, 1291
PspEI GGTNACC 1 cut(s) 845
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 2 cut(s) 627, 1291
PspN4I GGNNCC 2 cut(s) 64, 214
PspPI GGNCC 3 cut(s) 242, 663, 995
PsrI GAACNNNNNNTAC 4 cut(s) 100, 132, 1089, 1121
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 2 cut(s) 397, 979
PvuII CAGCTG 1 cut(s) 1165
RsaI GTAC 4 cut(s) 144, 205, 420, 1303
RsaNI GTAC 4 cut(s) 143, 204, 419, 1302
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 2 cut(s) 606, 1352
SatI GCNGC 1 cut(s) 1166
Sau3AI GATC 4 cut(s) 397, 823, 912, 979
Sau96I GGNCC 3 cut(s) 242, 663, 995
ScaI AGTACT 1 cut(s) 144
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 629, 1293
SduI GDGCHC 1 cut(s) 65
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 146, 971
SmoI CTYRAG 2 cut(s) 146, 971
Sse9I AATT 9 cut(s) 92, 197, 381, 603, 920, 1010, 1098, 1349, 1372
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 702
SspMI CTAG 5 cut(s) 309, 450, 1233, 1263, 1322
StyD4I CCNGG 2 cut(s) 627, 1291
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 4 cut(s) 154, 503, 578, 789
TaqI TCGA 3 cut(s) 297, 879, 911
TasI AATT 9 cut(s) 92, 197, 381, 603, 920, 1010, 1098, 1349, 1372
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 4 cut(s) 162, 581, 989, 1122
Tru1I TTAA 2 cut(s) 606, 1352
Tru9I TTAA 2 cut(s) 606, 1352
TscAI CASTG 3 cut(s) 289, 591, 1089
TseFI GTSAC 2 cut(s) 46, 1039
TseI GCWGC 1 cut(s) 1165
Tsp45I GTSAC 2 cut(s) 46, 1039
TspDTI ATGAA 5 cut(s) 17, 144, 552, 827, 1158
TspGWI ACGGA 1 cut(s) 992
TspRI CASTG 3 cut(s) 289, 591, 1089
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 3 cut(s) 197, 381, 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 345
XspI CTAG 5 cut(s) 309, 450, 1233, 1263, 1322
ZrmI AGTACT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.