Rroxscaffold_4G00282370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000576
Physical Location & Seq
Reverse (-)
4418247 .. 4418576
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282370.1

Sequence Viewer

Length: 330 bp
ATGGTGGTACTCACGGACGGCCGCAAGTATGGAGGCAGAGGTGGTGTCAAATCACACCGAGGTTGCGGAGATGAGGGAGGAACCGTTTTCCTCCGGCTCGGGTCTTTCGTTGGTGGGGATGATGGTGTGGCTTTGCCCATTAGAGGAGATTGCCTCGATGGTGATACCGAATGGTGCGGCGATGGGTTCTACAACGTCGGTGGCGGTGGCGGCTTGCTGGTTGGAGGCGACGGTGCTCTAGTCCGATGGGGTGGTGGAACTCGTGGGGTGCCCTTAGCAATTCCTACTTGGGCCCTCCGGGCTTCACTCTGTTTTGTGGGCTTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.05

Weight (kDa)

5.64

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AciI CCGC 5 cut(s) 22, 66, 177, 204, 210
AcoI YGGCCR 1 cut(s) 19
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 143
Alw21I GWGCWC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 2 cut(s) 19, 291
ApaI GGGCCC 1 cut(s) 295
AspS9I GGNCC 2 cut(s) 291, 292
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 98
BaeGI GKGCMC 2 cut(s) 273, 295
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 295
BauI CACGAG 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 238
BccI CCATC 4 cut(s) 116, 152, 176, 240
BceAI ACGGC 1 cut(s) 34
BcnI CCSGG 1 cut(s) 299
BfaI CTAG 1 cut(s) 239
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 3 cut(s) 22, 178, 211
BlsI GCNGC 3 cut(s) 23, 179, 212
Bme1390I CCNGG 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 291, 292
BmiI GGNNCC 3 cut(s) 82, 270, 293
BmrFI CCNGG 1 cut(s) 299
BplI GAGNNNNNCTC 2 cut(s) 138, 170
Bpu10I CCTNAGC 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 159
BseSI GKGCMC 2 cut(s) 273, 295
BseX3I CGGCCG 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 21, 293
BshNI GGYRCC 1 cut(s) 268
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 94, 298
BslI CCNNNNNNNGG 1 cut(s) 143
BsnI GGCC 2 cut(s) 21, 293
BsoBI CYCGRG 1 cut(s) 98
Bsp120I GGGCCC 1 cut(s) 291
Bsp1286I GDGCHC 3 cut(s) 238, 273, 295
BspACI CCGC 5 cut(s) 22, 66, 177, 204, 210
BspANI GGCC 2 cut(s) 21, 293
BspLI GGNNCC 3 cut(s) 82, 270, 293
BspT107I GGYRCC 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 58
BssSI CACGAG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 85, 233
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 124
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 210, 299
BstSCI CCNGG 1 cut(s) 297
BstSLI GKGCMC 2 cut(s) 273, 295
BstZI CGGCCG 1 cut(s) 19
BsuRI GGCC 2 cut(s) 21, 293
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 291, 292
Csp6I GTAC 1 cut(s) 8
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviJI RGCY 7 cut(s) 21, 97, 131, 213, 293, 302, 321
CviKI_1 RGCY 7 cut(s) 21, 97, 131, 213, 293, 302, 321
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 19
EagI CGGCCG 1 cut(s) 19
EclXI CGGCCG 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 295
Eco52I CGGCCG 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 295
FaiI YATR 2 cut(s) 30, 326
Fnu4HI GCNGC 3 cut(s) 22, 178, 211
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 3 cut(s) 22, 178, 211
FspBI CTAG 1 cut(s) 239
GluI GCNGC 3 cut(s) 22, 178, 211
HaeIII GGCC 2 cut(s) 21, 293
HapII CCGG 2 cut(s) 94, 298
HpaII CCGG 2 cut(s) 94, 298
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 245
Hpy99I CGWCG 2 cut(s) 200, 233
HpyCH4III ACNGT 2 cut(s) 85, 233
HpyCH4IV ACGT 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 299
HpyF3I CTNAG 1 cut(s) 274
HpySE526I ACGT 1 cut(s) 195
LpnPI CCDG 3 cut(s) 107, 203, 311
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 195
MhlI GDGCHC 3 cut(s) 238, 273, 295
MluCI AATT 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 202
MspI CCGG 2 cut(s) 94, 298
MspR9I CCNGG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 210, 299
NciI CCSGG 1 cut(s) 299
NlaIV GGNNCC 3 cut(s) 82, 270, 293
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PkrI GCNGC 3 cut(s) 23, 179, 212
PspN4I GGNNCC 3 cut(s) 82, 270, 293
PspOMI GGGCCC 1 cut(s) 291
PspPI GGNCC 2 cut(s) 291, 292
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SatI GCNGC 3 cut(s) 22, 178, 211
Sau96I GGNCC 2 cut(s) 291, 292
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 3 cut(s) 238, 273, 295
SetI ASST 3 cut(s) 43, 64, 198
Sse9I AATT 1 cut(s) 279
SsiI CCGC 5 cut(s) 22, 66, 177, 204, 210
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 85, 233
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 279
TauI GCSGC 3 cut(s) 24, 180, 213
TspGWI ACGGA 1 cut(s) 29
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.