Rh7DG211100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000576
Physical Location & Seq
Forward (+)
20283984 .. 20284355
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG211100.1

Sequence Viewer

Length: 372 bp
ATGTCTTCGCCGTCTTCTGATGGTCCTAGCGGTGCAGATCTCGCGATCGGTGCAGTTGGTTGGCTTTGGGTGTTGACGGCAGGGTATATGGTTTTTGATGGTGGTGGATCTCAGGTTGTTGACATTGGAACTGTTCTGGTGGCCACCACTGGTGCTTGCGACGGCGATGGAGGCAGGATAGCAGCCAGCATGTATGGCGGCAGCGGCTGGACTATGTTTTCATCTAGGTTGTACTATAGGTCTTATGGTTGGGCTTGGTATGGGGCTGCTAGGGTTTTTTTGACCCAGGAAGTAATATTGTCTTTCGGGTTTAATGTAACTTTGGGCCTTCATTCTTTTGGGAATGATGGGCCTATTTACTTCTTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

12.92

Weight (kDa)

4.59

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AciI CCGC 3 cut(s) 30, 198, 204
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 141
AfaI GTAC 1 cut(s) 233
AjnI CCWGG 1 cut(s) 285
AlwI GGATC 1 cut(s) 115
AlwNI CAGNNNCTG 1 cut(s) 207
AoxI GGCC 3 cut(s) 141, 325, 350
ApeKI GCWGC 3 cut(s) 182, 201, 266
AspS9I GGNCC 3 cut(s) 23, 325, 350
AvaII GGWCC 1 cut(s) 23
BalI TGGCCA 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 6
BbvI GCAGC 3 cut(s) 194, 213, 253
BccI CCATC 4 cut(s) 14, 92, 161, 341
BceAI ACGGC 2 cut(s) 93, 178
BciT130I CCWGG 1 cut(s) 287
BfaI CTAG 3 cut(s) 27, 225, 270
BfmI CTRYAG 1 cut(s) 235
BglII AGATCT 1 cut(s) 37
BisI GCNGC 5 cut(s) 183, 199, 202, 205, 267
BlsI GCNGC 5 cut(s) 184, 200, 203, 206, 268
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 3 cut(s) 23, 325, 350
BmrFI CCNGG 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 3 cut(s) 194, 213, 253
BsgI GTGCAG 2 cut(s) 54, 72
Bsh1236I CGCG 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 143, 327, 352
BsiEI CGRYCG 1 cut(s) 48
BsnI GGCC 3 cut(s) 143, 327, 352
Bsp143I GATC 3 cut(s) 37, 45, 107
Bsp68I TCGCGA 1 cut(s) 44
BspACI CCGC 3 cut(s) 30, 198, 204
BspANI GGCC 3 cut(s) 143, 327, 352
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 44
BspPI GGATC 1 cut(s) 115
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 3 cut(s) 37, 45, 107
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 157, 187
BstDEI CTNAG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 3 cut(s) 40, 48, 110
BstMBI GATC 3 cut(s) 37, 45, 107
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 5 cut(s) 41, 50, 171, 195, 204
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 235
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 194, 213, 253
BstV2I GAAGAC 1 cut(s) 6
BstX2I RGATCY 2 cut(s) 37, 107
BstYI RGATCY 2 cut(s) 37, 107
BsuRI GGCC 3 cut(s) 143, 327, 352
BtgZI GCGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 147
BtuMI TCGCGA 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 157, 187
CaiI CAGNNNCTG 1 cut(s) 207
Cfr13I GGNCC 3 cut(s) 23, 325, 350
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 190
CviJI RGCY 8 cut(s) 64, 143, 185, 207, 254, 266, 327, 352
CviKI_1 RGCY 8 cut(s) 64, 143, 185, 207, 254, 266, 327, 352
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 1 cut(s) 111
DpnI GATC 3 cut(s) 39, 47, 109
DpnII GATC 3 cut(s) 37, 45, 107
EaeI YGGCCR 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 193
FaiI YATR 8 cut(s) 87, 89, 191, 195, 215, 237, 246, 261
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 183, 199, 202, 205, 267
Fsp4HI GCNGC 5 cut(s) 183, 199, 202, 205, 267
FspBI CTAG 3 cut(s) 27, 225, 270
GluI GCNGC 5 cut(s) 183, 199, 202, 205, 267
HaeIII GGCC 3 cut(s) 143, 327, 352
Hin1II CATG 1 cut(s) 193
HincII GTYRAC 2 cut(s) 75, 121
HindII GTYRAC 2 cut(s) 75, 121
Hpy166II GTNNAC 2 cut(s) 75, 121
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 2 cut(s) 75, 121
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 35, 53, 367
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 50, 171, 195, 204
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 3 cut(s) 37, 45, 107
LpnPI CCDG 9 cut(s) 66, 98, 122, 135, 160, 193, 199, 272, 299
Lsp1109I GCAGC 3 cut(s) 194, 213, 253
MaeI CTAG 3 cut(s) 27, 225, 270
MaeIII GTNAC 1 cut(s) 316
MalI GATC 3 cut(s) 39, 47, 109
MboI GATC 3 cut(s) 37, 45, 107
MboII GAAGA 1 cut(s) 6
MflI RGATCY 2 cut(s) 37, 107
MlsI TGGCCA 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 143
MnlI CCTC 1 cut(s) 164
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 5 cut(s) 41, 50, 171, 195, 204
NdeII GATC 3 cut(s) 37, 45, 107
NlaIII CATG 1 cut(s) 193
NruI TCGCGA 1 cut(s) 44
NspI RCATGY 1 cut(s) 193
PkrI GCNGC 5 cut(s) 184, 200, 203, 206, 268
Ple19I CGATCG 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspPI GGNCC 3 cut(s) 23, 325, 350
PstNI CAGNNNCTG 1 cut(s) 207
PsuI RGATCY 2 cut(s) 37, 107
PvuI CGATCG 1 cut(s) 48
RruI TCGCGA 1 cut(s) 44
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 5 cut(s) 183, 199, 202, 205, 267
Sau3AI GATC 3 cut(s) 37, 45, 107
Sau96I GGNCC 3 cut(s) 23, 325, 350
ScrFI CCNGG 1 cut(s) 287
SetI ASST 3 cut(s) 117, 230, 242
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 23
SsiI CCGC 3 cut(s) 30, 198, 204
SspI AATATT 1 cut(s) 297
SspMI CTAG 3 cut(s) 27, 225, 270
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 133
TatI WGTACW 1 cut(s) 231
TauI GCSGC 2 cut(s) 201, 207
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 154
TseI GCWGC 3 cut(s) 182, 201, 266
TspDTI ATGAA 2 cut(s) 210, 320
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 1 cut(s) 193
XspI CTAG 3 cut(s) 27, 225, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.