RLG00000001000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000576
Physical Location & Seq
Forward (+)
9095285 .. 9095805
521 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001000

Sequence Viewer

Length: 450 bp
ATGGTGGTTATGGCAGACTTAGGTCTGCTTATTCTCTTATTCATTGCGCTGGGTAGCACTGAGGTTGTGTTGACTTCGTGGAATGGGGGCGCTGTTGTTTTTGCATCTAAGCTCATTGGTGAAGTGAAAGATGCGGCATTTGCGGGGATGGCCTCTAGGTGGCGGATGAGCGGGATTCAATCTTGGGTTGGTCTAGATCGGTTTGGAAGGTTCATTTCAGATCAGGGGTTTGCCATCTCTGAGGACGATTCGAGGCTGCCGGAGGTGAGGTCGGCTCTGTTTCCATCGGGCTCGGACCCTTTGTTGGCGGGGAGGATGACTTCGTTCTGCTTGTCAGAGGAATCTGCCTTTGATGTTGGTAACCCGGTGGCCGAGATGTTGGCTGCAAGCTCTGACATAAGTGTCTGCGCATATTGTGGCAAAGATCAATGGCAGGACGTACTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.88

Weight (kDa)

4.32

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 401
Acc16I TGCGCA 1 cut(s) 409
AccBSI CCGCTC 1 cut(s) 171
AciI CCGC 5 cut(s) 134, 143, 163, 171, 308
AcoI YGGCCR 1 cut(s) 369
AfaI GTAC 1 cut(s) 441
AfiI CCNNNNNNNGG 2 cut(s) 159, 304
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 2 cut(s) 112, 390
AluI AGCT 2 cut(s) 112, 390
AoxI GGCC 2 cut(s) 150, 369
ApeKI GCWGC 2 cut(s) 256, 383
AspLEI GCGC 3 cut(s) 49, 92, 410
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 131, 277
AvaII GGWCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 243, 370
BccI CCATC 3 cut(s) 142, 242, 292
BcnI CCSGG 1 cut(s) 365
BfaI CTAG 2 cut(s) 156, 194
BfoI RGCGCY 1 cut(s) 93
BisI GCNGC 3 cut(s) 135, 257, 384
BlsI GCNGC 3 cut(s) 136, 258, 385
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 2 cut(s) 113, 121
BoxI GACNNNNGTC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpuMI CCSGG 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 304
Bse1I ACTGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 42
BseGI GGATG 3 cut(s) 153, 171, 321
BseLI CCNNNNNNNGG 2 cut(s) 159, 304
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 51, 231
BseNI ACTGG 1 cut(s) 447
BseXI GCAGC 2 cut(s) 243, 370
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 2 cut(s) 152, 371
BsiSI CCGG 2 cut(s) 260, 365
BslI CCNNNNNNNGG 2 cut(s) 159, 304
BsnI GGCC 2 cut(s) 152, 371
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 3 cut(s) 196, 220, 424
BspACI CCGC 5 cut(s) 134, 143, 163, 171, 308
BspANI GGCC 2 cut(s) 152, 371
BspCNI CTCAG 2 cut(s) 52, 232
BspLI GGNNCC 1 cut(s) 297
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 447
BssMI GATC 3 cut(s) 196, 220, 424
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 4 cut(s) 19, 60, 108, 240
BstEII GGTNACC 1 cut(s) 359
BstF5I GGATG 3 cut(s) 153, 171, 321
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 3 cut(s) 49, 92, 410
BstKTI GATC 3 cut(s) 199, 223, 427
BstMBI GATC 3 cut(s) 196, 220, 424
BstMWI GCNNNNNNNGC 2 cut(s) 140, 149
BstPAI GACNNNNGTC 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 363
BstV1I GCAGC 2 cut(s) 243, 370
BsuRI GGCC 2 cut(s) 152, 371
BtsCI GGATG 3 cut(s) 153, 171, 321
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 388
CfoI GCGC 3 cut(s) 49, 92, 410
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 440
CviJI RGCY 8 cut(s) 112, 152, 256, 275, 291, 371, 383, 390
CviKI_1 RGCY 8 cut(s) 112, 152, 256, 275, 291, 371, 383, 390
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 4 cut(s) 19, 60, 108, 240
DpnI GATC 3 cut(s) 198, 222, 426
DpnII GATC 3 cut(s) 196, 220, 424
DrdI GACNNNNNNGTC 1 cut(s) 401
DseDI GACNNNNNNGTC 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 369
EciI GGCGGA 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 359
EcoO65I GGTNACC 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 293
FaiI YATR 3 cut(s) 11, 398, 412
FauI CCCGC 3 cut(s) 136, 164, 301
Fnu4HI GCNGC 3 cut(s) 135, 257, 384
FokI GGATG 3 cut(s) 160, 178, 328
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 3 cut(s) 135, 257, 384
FspBI CTAG 2 cut(s) 156, 194
FspI TGCGCA 1 cut(s) 409
GlaI GCGC 3 cut(s) 48, 91, 409
GluI GCNGC 3 cut(s) 135, 257, 384
GsaI CCCAGC 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 152, 371
HapII CCGG 2 cut(s) 260, 365
HhaI GCGC 3 cut(s) 49, 92, 410
Hin6I GCGC 3 cut(s) 47, 90, 408
HinP1I GCGC 3 cut(s) 47, 90, 408
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 3 cut(s) 175, 248, 341
HpaII CCGG 2 cut(s) 260, 365
HphI GGTGA 2 cut(s) 131, 277
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 5 cut(s) 220, 241, 295, 337, 394
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 201
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 2 cut(s) 104, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 149
HpyF3I CTNAG 4 cut(s) 19, 60, 108, 240
HpySE526I ACGT 1 cut(s) 438
HspAI GCGC 3 cut(s) 47, 90, 408
Kzo9I GATC 3 cut(s) 196, 220, 424
LpnPI CCDG 6 cut(s) 35, 209, 273, 378, 419, 428
Lsp1109I GCAGC 2 cut(s) 243, 370
LweI GCATC 2 cut(s) 113, 121
MaeI CTAG 2 cut(s) 156, 194
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 359
MalI GATC 3 cut(s) 198, 222, 426
MbiI CCGCTC 1 cut(s) 171
MboI GATC 3 cut(s) 196, 220, 424
MhlI GDGCHC 1 cut(s) 293
MnlI CCTC 8 cut(s) 55, 163, 235, 246, 256, 261, 306, 331
MspI CCGG 2 cut(s) 260, 365
MspR9I CCNGG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 140, 149
NciI CCSGG 1 cut(s) 365
NdeII GATC 3 cut(s) 196, 220, 424
NlaIV GGNNCC 1 cut(s) 297
NmeAIII GCCGAG 1 cut(s) 397
NsbI TGCGCA 1 cut(s) 409
PfeI GAWTC 3 cut(s) 175, 248, 341
PkrI GCNGC 3 cut(s) 136, 258, 385
PshAI GACNNNNGTC 1 cut(s) 21
PspEI GGTNACC 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 295
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
SatI GCNGC 3 cut(s) 135, 257, 384
Sau3AI GATC 3 cut(s) 196, 220, 424
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 293
SetI ASST 9 cut(s) 25, 66, 114, 161, 212, 267, 272, 392, 441
SfaNI GCATC 2 cut(s) 113, 121
SinI GGWCC 1 cut(s) 295
SsiI CCGC 5 cut(s) 134, 143, 163, 171, 308
SspMI CTAG 2 cut(s) 156, 194
StyD4I CCNGG 1 cut(s) 363
TaiI ACGT 1 cut(s) 441
TaqI TCGA 1 cut(s) 251
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 3 cut(s) 175, 248, 341
TscAI CASTG 1 cut(s) 64
TseI GCWGC 2 cut(s) 256, 383
TspDTI ATGAA 2 cut(s) 31, 202
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 295
XbaI TCTAGA 1 cut(s) 193
XspI CTAG 2 cut(s) 156, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.