RLG00000036930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000576
Physical Location & Seq
Forward (+)
86644843 .. 86645472
630 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036930

Sequence Viewer

Length: 420 bp
ATGAGAAAACCTAGCGCTCTGTTAGGTCTTGGGAGCAATGCATCTCTTAGGGCCGGCATCTCCTCGGTGGATCTCGGCAGGGAAGCTCCACATGTTTCTGGAGATTGGGCTCATTGCGATGGTACAGGCTTAGAGGTTCACCTTCATGGGGATGTGTTGCGTCTCATCTACAGGTCGGGCAAGAGGATCCGCAACGTATGGGTTGCAAGGGAGCACGGTTTGGTGGTAGCATTGTCTGGGTTTTGTTGGGTTCCGATCGAGATTGGTGACAAGGAGGGCAGCAAGGGTGGTGACTTTTGGTGTCCTGCTATTCGAGGAATATCGCCGTATGATGAGCAAATGACCCGCAGCCTCTCTGGGCTGGACATGCTGTGCGACACTGCAGTGATTAAGGATGGTGCTCATGGTAGATGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.02

Weight (kDa)

7.0

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 190, 346
AclWI GGATC 3 cut(s) 78, 181, 194
AfaI GTAC 1 cut(s) 124
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 91
AleI CACNNNNGTG 1 cut(s) 383
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw21I GWGCWC 2 cut(s) 216, 403
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 3 cut(s) 78, 181, 194
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 2 cut(s) 51, 414
ApeKI GCWGC 2 cut(s) 279, 348
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 51, 414
AsuHPI GGTGA 3 cut(s) 131, 278, 302
BamHI GGATCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 2 cut(s) 216, 403
BbvI GCAGC 2 cut(s) 291, 360
BccI CCATC 3 cut(s) 113, 389, 405
BceAI ACGGC 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 2 cut(s) 169, 381
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 2 cut(s) 280, 349
BlsI GCNGC 2 cut(s) 281, 350
BmgT120I GGNCC 2 cut(s) 51, 414
BmiI GGNNCC 2 cut(s) 188, 252
BmsI GCATC 2 cut(s) 50, 66
BpmI CTGGAG 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 53
Bse3DI GCAATG 2 cut(s) 43, 112
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 157, 400
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 2 cut(s) 43, 112
BseRI GAGGAG 1 cut(s) 52
BseXI GCAGC 2 cut(s) 291, 360
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 2 cut(s) 53, 416
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 216, 403
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 167
BsmBI CGTCTC 1 cut(s) 167
BsnI GGCC 2 cut(s) 53, 416
Bsp1286I GDGCHC 3 cut(s) 112, 216, 403
Bsp143I GATC 3 cut(s) 70, 186, 255
BspACI CCGC 2 cut(s) 190, 346
BspANI GGCC 2 cut(s) 53, 416
BspLI GGNNCC 2 cut(s) 188, 252
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 3 cut(s) 78, 181, 194
BsrDI GCAATG 2 cut(s) 43, 112
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 70, 186, 255
Bst4CI ACNGT 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 47, 130
BstF5I GGATG 2 cut(s) 157, 400
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 3 cut(s) 73, 189, 258
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 70, 186, 255
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNSI RCATGY 2 cut(s) 95, 370
BstSFI CTRYAG 2 cut(s) 169, 381
BstV1I GCAGC 2 cut(s) 291, 360
BstX2I RGATCY 2 cut(s) 70, 186
BstYI RGATCY 2 cut(s) 70, 186
BsuRI GGCC 2 cut(s) 53, 416
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 157, 400
BtsI GCAGTG 2 cut(s) 378, 390
BtsIMutI CAGTG 2 cut(s) 378, 390
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 51, 414
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 123
CviAII CATG 4 cut(s) 92, 146, 367, 404
CviJI RGCY 7 cut(s) 53, 86, 110, 129, 351, 361, 416
CviKI_1 RGCY 7 cut(s) 53, 86, 110, 129, 351, 361, 416
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 2 cut(s) 47, 130
DpnI GATC 3 cut(s) 72, 188, 257
DpnII GATC 3 cut(s) 70, 186, 255
Eco24I GRGCYC 1 cut(s) 112
Eco47III AGCGCT 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 4 cut(s) 95, 149, 370, 407
FaiI YATR 6 cut(s) 93, 147, 199, 330, 368, 405
FatI CATG 4 cut(s) 91, 145, 366, 403
FauI CCCGC 1 cut(s) 353
Fnu4HI GCNGC 2 cut(s) 280, 349
FokI GGATG 2 cut(s) 164, 407
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 280, 349
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 16
GluI GCNGC 2 cut(s) 280, 349
GsuI CTGGAG 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 53, 416
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 17
Hin1II CATG 4 cut(s) 95, 149, 370, 407
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HpaII CCGG 1 cut(s) 54
HphI GGTGA 3 cut(s) 131, 278, 302
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 2 cut(s) 99, 259
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 41, 206, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 2 cut(s) 47, 130
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 4 cut(s) 95, 149, 370, 407
HspAI GCGC 1 cut(s) 15
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 70, 186, 255
LmnI GCTCC 3 cut(s) 33, 91, 211
LpnPI CCDG 9 cut(s) 64, 67, 84, 111, 157, 222, 318, 342, 347
Lsp1109I GCAGC 2 cut(s) 291, 360
LweI GCATC 2 cut(s) 50, 66
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 266, 290
MalI GATC 3 cut(s) 72, 188, 257
MboI GATC 3 cut(s) 70, 186, 255
MflI RGATCY 2 cut(s) 70, 186
MhlI GDGCHC 3 cut(s) 112, 216, 403
MnlI CCTC 6 cut(s) 73, 127, 177, 268, 308, 362
Mph1103I ATGCAT 1 cut(s) 43
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 4 cut(s) 117, 144, 150, 383
MspI CCGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 367
NaeI GCCGGC 1 cut(s) 55
NdeII GATC 3 cut(s) 70, 186, 255
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 4 cut(s) 95, 149, 370, 407
NlaIV GGNNCC 2 cut(s) 188, 252
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 2 cut(s) 266, 290
NsiI ATGCAT 1 cut(s) 43
NspI RCATGY 2 cut(s) 95, 370
OliI CACNNNNGTG 1 cut(s) 383
PciI ACATGT 1 cut(s) 91
PdiI GCCGGC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 281, 350
Ple19I CGATCG 1 cut(s) 258
PscI ACATGT 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 188, 252
PspPI GGNCC 2 cut(s) 51, 414
PstI CTGCAG 1 cut(s) 385
PsuI RGATCY 2 cut(s) 70, 186
PvuI CGATCG 1 cut(s) 258
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 4 cut(s) 117, 144, 150, 383
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 280, 349
Sau3AI GATC 3 cut(s) 70, 186, 255
Sau96I GGNCC 2 cut(s) 51, 414
SduI GDGCHC 3 cut(s) 112, 216, 403
SetI ASST 7 cut(s) 13, 28, 88, 138, 144, 176, 198
SfaNI GCATC 2 cut(s) 50, 66
SfcI CTRYAG 2 cut(s) 169, 381
SmiMI CAYNNNNRTG 4 cut(s) 117, 144, 150, 383
SsiI CCGC 2 cut(s) 190, 346
SspMI CTAG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 258, 313
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 2 cut(s) 385, 390
TseFI GTSAC 2 cut(s) 266, 290
TseI GCWGC 2 cut(s) 279, 348
Tsp45I GTSAC 2 cut(s) 266, 290
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 2 cut(s) 385, 390
XceI RCATGY 2 cut(s) 95, 370
XspI CTAG 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.