RLG00000034953

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000576
Physical Location & Seq
Forward (+)
57560505 .. 57564006
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034953

Sequence Viewer

Length: 774 bp
ATGCCTTTACAGCCAATGATGCATAGGCTTTTCTACAGAAGTGGTTTCTCAAGTTCCCATCATACAGAACAAGAACCTTCTACATTGCAGGGGAGAGTTATGCAGAAAAATAAGATACATATATTTACCAGGCACTCCAGCACTGCTGCACTCTTCGAGAAATCACCTCACAAGAATCAAAAGGAGAAAGACCCATGCAATAATTCTGGAATTTATGCACTGGCAACTGACTTGACTGAATCAGATGGGAGAGTTGTAATGAATCAAACCGCATATTACTACTCCAGCAAGCAATGTCCTTATTCATTGCTTCATAAATATATTTGTTTGAAACAGCTCCTGGAATTCTCTGTTTTTCCGTTACTTGCTACATATTCAACTGGCTTGGGTGCTTATTCTCTTCTTCATTGCACTGGTGGCGCTGAGGCGGTGTTGATTTCATGGGATGGGGGTGCTATTGTTTCCGTGTCCAAAATTGACGGTGAAGTGAAAGATGCGGCCTCGTTTGCAGTGATGGCATCTAGGTGGCGGATGAGCGGCTATCCGATCTTAGACGATGATCTGCTGGTTTGCTTGACCTTGGGATCTGCCATCTCTAAAGGCGATCTGAGGCTGTCGGAGATGAGACCGACTCTGTTTCCCTCGAGCTCGGACTCGTTGTTAGTAGGGAGGATGACTTCTTTCTACTCATCAGAGGAAGCTGCTTTTGATGGTGGTAACCTGGTGGCCAGGATGTTGGTTGCGAGCTCTGACATCGGTGGCTGCGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

28.14

Weight (kDa)

6.44

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 766
AccBSI CCGCTC 1 cut(s) 537
AciI CCGC 5 cut(s) 270, 428, 497, 529, 537
AclWI GGATC 1 cut(s) 592
AcoI YGGCCR 1 cut(s) 726
AcsI RAATTY 2 cut(s) 210, 344
AgsI TTSAA 2 cut(s) 331, 378
AjnI CCWGG 4 cut(s) 128, 339, 720, 728
AluBI AGCT 4 cut(s) 337, 648, 701, 747
AluI AGCT 4 cut(s) 337, 648, 701, 747
Alw21I GWGCWC 2 cut(s) 650, 749
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 1 cut(s) 592
AlwNI CAGNNNCTG 1 cut(s) 340
Ama87I CYCGRG 1 cut(s) 643
AoxI GGCC 2 cut(s) 498, 726
ApeKI GCWGC 3 cut(s) 146, 701, 762
ApoI RAATTY 2 cut(s) 210, 344
AspLEI GCGC 2 cut(s) 422, 767
AsuHPI GGTGA 2 cut(s) 156, 494
AvaI CYCGRG 1 cut(s) 643
BalI TGGCCA 1 cut(s) 728
BanII GRGCYC 2 cut(s) 650, 749
Bbv12I GWGCWC 2 cut(s) 650, 749
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 133, 688, 749
BccI CCATC 6 cut(s) 66, 239, 440, 508, 599, 704
BciT130I CCWGG 4 cut(s) 130, 341, 722, 730
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 423
BisI GCNGC 5 cut(s) 147, 498, 538, 702, 763
BlsI GCNGC 5 cut(s) 148, 499, 539, 703, 764
Bme1390I CCNGG 4 cut(s) 130, 341, 722, 730
BmeT110I CYCGRG 1 cut(s) 643
BmrFI CCNGG 4 cut(s) 130, 341, 722, 730
BmsI GCATC 3 cut(s) 9, 484, 527
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BpmI CTGGAG 2 cut(s) 121, 268
Bpu10I CCTNAGC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 1 cut(s) 579
Bse1I ACTGG 3 cut(s) 225, 385, 418
Bse3DI GCAATG 4 cut(s) 83, 299, 305, 406
BseBI CCWGG 4 cut(s) 130, 341, 722, 730
BseDI CCNNGG 1 cut(s) 579
BseGI GGATG 4 cut(s) 451, 537, 678, 738
BseMI GCAATG 4 cut(s) 83, 299, 305, 406
BseMII CTCAG 2 cut(s) 414, 599
BseNI ACTGG 3 cut(s) 225, 385, 418
BseXI GCAGC 3 cut(s) 133, 688, 749
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 2 cut(s) 500, 728
BsiHKAI GWGCWC 2 cut(s) 650, 749
BsiHKCI CYCGRG 1 cut(s) 643
BsmAI GTCTC 1 cut(s) 619
BsnI GGCC 2 cut(s) 500, 728
Bso31I GGTCTC 1 cut(s) 619
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 2 cut(s) 650, 749
Bsp143I GATC 4 cut(s) 546, 559, 584, 604
BspACI CCGC 5 cut(s) 270, 428, 497, 529, 537
BspANI GGCC 2 cut(s) 500, 728
BspCNI CTCAG 2 cut(s) 415, 600
BspPI GGATC 1 cut(s) 592
BspTNI GGTCTC 1 cut(s) 619
BsrBI CCGCTC 1 cut(s) 537
BsrDI GCAATG 4 cut(s) 83, 299, 305, 406
BsrI ACTGG 3 cut(s) 225, 385, 418
BssECI CCNNGG 1 cut(s) 579
BssMI GATC 4 cut(s) 546, 559, 584, 604
BssT1I CCWWGG 1 cut(s) 579
Bst2UI CCWGG 4 cut(s) 130, 341, 722, 730
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 2 cut(s) 158, 405
BstC8I GCNNGC 2 cut(s) 290, 745
BstDEI CTNAG 3 cut(s) 423, 550, 608
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 4 cut(s) 451, 537, 678, 738
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 2 cut(s) 422, 767
BstKTI GATC 4 cut(s) 549, 562, 587, 607
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 4 cut(s) 546, 559, 584, 604
BstMWI GCNNNNNNNGC 5 cut(s) 10, 19, 417, 506, 515
BstNI CCWGG 4 cut(s) 130, 341, 722, 730
BstPI GGTNACC 1 cut(s) 716
BstSCI CCNGG 4 cut(s) 128, 339, 720, 728
BstSFI CTRYAG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 133, 688, 749
BstX2I RGATCY 1 cut(s) 584
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 1 cut(s) 584
BsuRI GGCC 2 cut(s) 500, 728
BtsCI GGATG 4 cut(s) 451, 537, 678, 738
BtsI GCAGTG 2 cut(s) 141, 516
BtsIMutI CAGTG 4 cut(s) 141, 218, 411, 516
Cac8I GCNNGC 2 cut(s) 290, 745
CaiI CAGNNNCTG 1 cut(s) 340
CfoI GCGC 2 cut(s) 422, 767
CsiI ACCWGGT 1 cut(s) 720
CviAII CATG 2 cut(s) 195, 441
DdeI CTNAG 3 cut(s) 423, 550, 608
DpnI GATC 4 cut(s) 548, 561, 586, 606
DpnII GATC 4 cut(s) 546, 559, 584, 604
EaeI YGGCCR 1 cut(s) 726
Eam1104I CTCTTC 2 cut(s) 158, 405
EarI CTCTTC 2 cut(s) 158, 405
EciI GGCGGA 1 cut(s) 544
Ecl136II GAGCTC 2 cut(s) 648, 747
Eco130I CCWWGG 1 cut(s) 579
Eco24I GRGCYC 2 cut(s) 650, 749
Eco31I GGTCTC 1 cut(s) 619
Eco53kI GAGCTC 2 cut(s) 648, 747
Eco88I CYCGRG 1 cut(s) 643
Eco91I GGTNACC 1 cut(s) 716
EcoICRI GAGCTC 2 cut(s) 648, 747
EcoO65I GGTNACC 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 4 cut(s) 128, 339, 720, 728
EcoT14I CCWWGG 1 cut(s) 579
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 2 cut(s) 650, 749
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 2 cut(s) 198, 444
FatI CATG 2 cut(s) 194, 440
Fnu4HI GCNGC 5 cut(s) 147, 498, 538, 702, 763
FokI GGATG 4 cut(s) 458, 544, 685, 745
FriOI GRGCYC 2 cut(s) 650, 749
Fsp4HI GCNGC 5 cut(s) 147, 498, 538, 702, 763
FspBI CTAG 1 cut(s) 522
FspI TGCGCA 1 cut(s) 766
GlaI GCGC 2 cut(s) 421, 766
GluI GCNGC 5 cut(s) 147, 498, 538, 702, 763
GsuI CTGGAG 2 cut(s) 121, 268
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 2 cut(s) 500, 728
HhaI GCGC 2 cut(s) 422, 767
Hin1II CATG 2 cut(s) 198, 444
Hin6I GCGC 2 cut(s) 420, 765
HinP1I GCGC 2 cut(s) 420, 765
HinfI GANTC 5 cut(s) 175, 239, 262, 631, 653
HphI GGTGA 2 cut(s) 156, 494
Hpy188I TCNGA 7 cut(s) 244, 546, 609, 619, 652, 694, 751
Hpy188III TCNNGA 2 cut(s) 157, 207
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4V TGCA 8 cut(s) 22, 88, 103, 149, 198, 218, 411, 509
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 19, 417, 506, 515
HpyF3I CTNAG 3 cut(s) 423, 550, 608
Hsp92II CATG 2 cut(s) 198, 444
HspAI GCGC 2 cut(s) 420, 765
Kzo9I GATC 4 cut(s) 546, 559, 584, 604
LmnI GCTCC 1 cut(s) 342
Lsp1109I GCAGC 3 cut(s) 133, 688, 749
LweI GCATC 3 cut(s) 9, 484, 527
MabI ACCWGGT 1 cut(s) 720
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 2 cut(s) 360, 716
MalI GATC 4 cut(s) 548, 561, 586, 606
MbiI CCGCTC 1 cut(s) 537
MboI GATC 4 cut(s) 546, 559, 584, 604
MboII GAAGA 3 cut(s) 145, 392, 395
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 2 cut(s) 650, 749
MlsI TGGCCA 1 cut(s) 728
MluCI AATT 4 cut(s) 202, 210, 344, 474
MluNI TGGCCA 1 cut(s) 728
MlyI GAGTC 2 cut(s) 625, 647
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 7 cut(s) 177, 418, 511, 603, 652, 663, 688
Mox20I TGGCCA 1 cut(s) 728
Mph1103I ATGCAT 1 cut(s) 24
MscI TGGCCA 1 cut(s) 728
MslI CAYNNNNRTG 1 cut(s) 523
Msp20I TGGCCA 1 cut(s) 728
MspR9I CCNGG 4 cut(s) 130, 341, 722, 730
MvaI CCWGG 4 cut(s) 130, 341, 722, 730
MwoI GCNNNNNNNGC 5 cut(s) 10, 19, 417, 506, 515
NdeII GATC 4 cut(s) 546, 559, 584, 604
NlaIII CATG 2 cut(s) 198, 444
NsbI TGCGCA 1 cut(s) 766
NsiI ATGCAT 1 cut(s) 24
PaeR7I CTCGAG 1 cut(s) 643
PfeI GAWTC 3 cut(s) 175, 239, 262
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 5 cut(s) 148, 499, 539, 703, 764
PleI GAGTC 2 cut(s) 625, 647
PpsI GAGTC 2 cut(s) 625, 647
Psp124BI GAGCTC 2 cut(s) 650, 749
Psp6I CCWGG 4 cut(s) 128, 339, 720, 728
PspEI GGTNACC 1 cut(s) 716
PspGI CCWGG 4 cut(s) 128, 339, 720, 728
PspXI VCTCGAGB 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 584
RseI CAYNNNNRTG 1 cut(s) 523
SacI GAGCTC 2 cut(s) 650, 749
SatI GCNGC 5 cut(s) 147, 498, 538, 702, 763
Sau3AI GATC 4 cut(s) 546, 559, 584, 604
SchI GAGTC 2 cut(s) 625, 647
ScrFI CCNGG 4 cut(s) 130, 341, 722, 730
SduI GDGCHC 2 cut(s) 650, 749
SetI ASST 9 cut(s) 79, 169, 339, 527, 581, 650, 703, 723, 749
SexAI ACCWGGT 1 cut(s) 720
SfaNI GCATC 3 cut(s) 9, 484, 527
SfcI CTRYAG 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 643
SlaI CTCGAG 1 cut(s) 643
SmiMI CAYNNNNRTG 1 cut(s) 523
SmlI CTYRAG 2 cut(s) 49, 643
SmoI CTYRAG 2 cut(s) 49, 643
Sse9I AATT 4 cut(s) 202, 210, 344, 474
SsiI CCGC 5 cut(s) 270, 428, 497, 529, 537
SspMI CTAG 1 cut(s) 522
SstI GAGCTC 2 cut(s) 650, 749
StyD4I CCNGG 4 cut(s) 128, 339, 720, 728
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 1 cut(s) 482
TaqI TCGA 2 cut(s) 156, 644
TaqII GACCGA 1 cut(s) 643
TasI AATT 4 cut(s) 202, 210, 344, 474
TauI GCSGC 2 cut(s) 500, 540
TfiI GAWTC 3 cut(s) 175, 239, 262
TscAI CASTG 4 cut(s) 148, 225, 418, 516
TseI GCWGC 3 cut(s) 146, 701, 762
TspDTI ATGAA 5 cut(s) 275, 294, 302, 395, 429
TspGWI ACGGA 2 cut(s) 348, 454
TspRI CASTG 4 cut(s) 148, 225, 418, 516
XapI RAATTY 2 cut(s) 210, 344
XhoI CTCGAG 1 cut(s) 643
XspI CTAG 1 cut(s) 522
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.