RLG00000023109

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
18230522 .. 18231930
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023109

Sequence Viewer

Length: 363 bp
ATGCCTTTACAGCCAATGATGCATAGGCTTTTCTACAGAAGTGGTTTCTCAAGTTCCCATCATACAGAACAAGAACCTTCTACATTGCAGGGGAGAGTTATGCAGAAAAATAAGATACATATATTTACCAGGCACTCCAGCACTGCTGCACTCTTCGAGAAATCACCTCACAAGAATCAAAAGGAGAAAGACCCATGCAATAATTCTGGAATTTATGCACTGGCAACTGACTTGACTGAATCAGATGGGAGAGTTGTAATGAATCAAACCGCATATTACTACTCCAGCAAGCAATGTCCTTATTCATTGCTTCATAAATATATTTGGTACCAAGTTTTCGCAAGTAGCTCAGCTCCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.81

Weight (kDa)

9.3

Isoelectric Point (pI)

71.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 327
AciI CCGC 1 cut(s) 270
AcsI RAATTY 1 cut(s) 210
AfaI GTAC 1 cut(s) 329
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 2 cut(s) 348, 353
AluI AGCT 2 cut(s) 348, 353
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 210
Asp718I GGTACC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 156
BanI GGYRCC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 133
BccI CCATC 2 cut(s) 66, 239
BciT130I CCWGG 1 cut(s) 130
BfmI CTRYAG 1 cut(s) 34
BisI GCNGC 1 cut(s) 147
BlpI GCTNAGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 9
BpmI CTGGAG 2 cut(s) 121, 268
Bpu1102I GCTNAGC 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 225
Bse3DI GCAATG 3 cut(s) 83, 299, 305
BseBI CCWGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 356
BseMI GCAATG 3 cut(s) 83, 299, 305
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 327
Bsp1720I GCTNAGC 1 cut(s) 349
BspACI CCGC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 362
BspLI GGNNCC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 327
BsrDI GCAATG 3 cut(s) 83, 299, 305
BsrI ACTGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 356
BstMWI GCNNNNNNNGC 2 cut(s) 10, 19
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 141, 218
Cac8I GCNNGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 195
CviJI RGCY 4 cut(s) 13, 28, 348, 353
CviKI_1 RGCY 4 cut(s) 13, 28, 348, 353
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 24
FaeI CATG 1 cut(s) 198
FatI CATG 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 2 cut(s) 121, 268
Hin1II CATG 1 cut(s) 198
HinfI GANTC 3 cut(s) 175, 239, 262
HphI GGTGA 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 157, 207
HpyAV CCTTC 1 cut(s) 87
HpyCH4V TGCA 6 cut(s) 22, 88, 103, 149, 198, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 19
HpyF3I CTNAG 1 cut(s) 349
Hsp92II CATG 1 cut(s) 198
KpnI GGTACC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 7 cut(s) 74, 115, 142, 151, 192, 206, 298
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 145
MluCI AATT 2 cut(s) 202, 210
MnlI CCTC 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 10, 19
NlaIII CATG 1 cut(s) 198
NlaIV GGNNCC 1 cut(s) 329
NsiI ATGCAT 1 cut(s) 24
PfeI GAWTC 3 cut(s) 175, 239, 262
PkrI GCNGC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 329
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SatI GCNGC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 130
SetI ASST 4 cut(s) 79, 169, 350, 355
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 2 cut(s) 202, 210
SsiI CCGC 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 128
TaqI TCGA 1 cut(s) 156
TasI AATT 2 cut(s) 202, 210
TfiI GAWTC 3 cut(s) 175, 239, 262
TscAI CASTG 2 cut(s) 148, 225
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 3 cut(s) 275, 294, 302
TspRI CASTG 2 cut(s) 148, 225
XapI RAATTY 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.