Rh2CG061100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000576
Physical Location & Seq
Reverse (-)
4972353 .. 4974190
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG061100.1

Sequence Viewer

Length: 480 bp
ATGAAGTTTGATCTCATCACTTACTCGATACTCTTAAGTGATGATCGTTGGCGTGTCAGTGATCTTGCTATTCCCGTTGGTGATGGAGTACTGGTCTGCGTGGATTCATGGACTACTGCTGGTGGTGGTGGTAGAGCTCCTGGGTATATCAGCTGTAAGGATGGAAGCAAGAGCCGCTGTCAAATCAAATCGGGGCTTCCGGAGATGTGGGCGGATATGTTTTTCTCTGACCCGGGTAGCTCGTTGGTGGGGCTGTTGGCGTGGCTCTGCTCATCAAAGAAGATTACCTCTGGGGATACTGACTGGTGCAGCAACGGGGTCTACCACGTCGGTGATGGTGGAGGCTTGCTGGTTGGCGGCGAAGGTGTGCTGGTCCTGTGGGGTGCCCTTAGCAATTTCTGCTTGGGCTCTCTGGGTGTCAATCTGGTCTGTGGGCTTTACACACTGCTGGACTTGGGTGGGCTGGACCTTCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.71

Weight (kDa)

4.46

Isoelectric Point (pI)

24.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AccI GTMKAC 1 cut(s) 321
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 3 cut(s) 175, 212, 357
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 1 cut(s) 90
AflII CTTAAG 1 cut(s) 34
AjiI CACGTC 1 cut(s) 328
AjnI CCWGG 1 cut(s) 139
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 3 cut(s) 137, 153, 240
AluI AGCT 3 cut(s) 137, 153, 240
Alw21I GWGCWC 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 232
Aor13HI TCCGGA 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 373, 466
AsuC2I CCSGG 2 cut(s) 233, 234
AsuHPI GGTGA 2 cut(s) 92, 344
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 2 cut(s) 373, 466
BaeGI GKGCMC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 2 cut(s) 139, 410
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 321
BccI CCATC 3 cut(s) 77, 155, 329
BciT130I CCWGG 1 cut(s) 141
BciVI GTATCC 1 cut(s) 289
BcnI CCSGG 2 cut(s) 233, 234
BfrI CTTAAG 1 cut(s) 34
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 3 cut(s) 175, 310, 358
BlsI GCNGC 3 cut(s) 176, 311, 359
BmcAI AGTACT 1 cut(s) 90
Bme1390I CCNGG 3 cut(s) 141, 233, 234
Bme18I GGWCC 2 cut(s) 373, 466
BmeT110I CYCGRG 1 cut(s) 232
BmgBI CACGTC 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 373, 466
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 3 cut(s) 141, 233, 234
Bpu10I CCTNAGC 1 cut(s) 389
BpuMI CCSGG 2 cut(s) 233, 234
BsaJI CCNNGG 2 cut(s) 140, 232
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bse1I ACTGG 2 cut(s) 96, 308
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 140, 232
BseGI GGATG 1 cut(s) 166
BseNI ACTGG 2 cut(s) 96, 308
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 1 cut(s) 321
BsgI GTGCAG 1 cut(s) 328
BshNI GGYRCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 2 cut(s) 200, 233
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 3 cut(s) 139, 388, 410
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 3 cut(s) 10, 43, 61
BspACI CCGC 3 cut(s) 175, 212, 357
BspEI TCCGGA 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 385
BspT107I GGYRCC 1 cut(s) 383
BspTI CTTAAG 1 cut(s) 34
BsrI ACTGG 2 cut(s) 96, 308
BssECI CCNNGG 2 cut(s) 140, 232
BssMI GATC 3 cut(s) 10, 43, 61
Bst2UI CCWGG 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 34
BstAPI GCANNNNNTGC 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 1 cut(s) 389
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 3 cut(s) 13, 46, 64
BstMBI GATC 3 cut(s) 10, 43, 61
BstMWI GCNNNNNNNGC 2 cut(s) 174, 399
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 3 cut(s) 139, 231, 232
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 321
BsuI GTATCC 1 cut(s) 289
BtrI CACGTC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 443
BtsIMutI CAGTG 2 cut(s) 64, 443
Cac8I GCNNGC 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 373, 466
Cfr9I CCCGGG 1 cut(s) 232
Csp6I GTAC 1 cut(s) 89
CviAII CATG 1 cut(s) 108
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 1 cut(s) 389
DpnI GATC 3 cut(s) 12, 45, 63
DpnII GATC 3 cut(s) 10, 43, 61
EciI GGCGGA 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 2 cut(s) 139, 410
Eco47I GGWCC 2 cut(s) 373, 466
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 139
EcoT38I GRGCYC 2 cut(s) 139, 410
FaeI CATG 1 cut(s) 111
FaiI YATR 3 cut(s) 109, 147, 218
FatI CATG 1 cut(s) 107
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 3 cut(s) 175, 310, 358
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 139, 410
Fsp4HI GCNGC 3 cut(s) 175, 310, 358
GluI GCNGC 3 cut(s) 175, 310, 358
HapII CCGG 2 cut(s) 200, 233
Hin1II CATG 1 cut(s) 111
HinfI GANTC 1 cut(s) 104
HpaII CCGG 2 cut(s) 200, 233
HphI GGTGA 2 cut(s) 92, 344
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 356, 479
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 399
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 10, 43, 61
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 1 cut(s) 321
MaeII ACGT 1 cut(s) 327
MalI GATC 3 cut(s) 12, 45, 63
MboI GATC 3 cut(s) 10, 43, 61
MboII GAAGA 1 cut(s) 292
MhlI GDGCHC 3 cut(s) 139, 388, 410
MluCI AATT 1 cut(s) 394
MnlI CCTC 2 cut(s) 298, 335
MroI TCCGGA 1 cut(s) 199
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 153, 177
MspCI CTTAAG 1 cut(s) 34
MspI CCGG 2 cut(s) 200, 233
MspR9I CCNGG 3 cut(s) 141, 233, 234
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 174, 399
NciI CCSGG 2 cut(s) 233, 234
NdeII GATC 3 cut(s) 10, 43, 61
NlaIII CATG 1 cut(s) 111
NlaIV GGNNCC 1 cut(s) 385
OliI CACNNNNGTG 1 cut(s) 330
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 176, 311, 359
Psp124BI GAGCTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 385
PspPI GGNCC 2 cut(s) 373, 466
PvuII CAGCTG 1 cut(s) 153
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 330
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 3 cut(s) 175, 310, 358
Sau3AI GATC 3 cut(s) 10, 43, 61
Sau96I GGNCC 2 cut(s) 373, 466
ScaI AGTACT 1 cut(s) 90
ScrFI CCNGG 3 cut(s) 141, 233, 234
SduI GDGCHC 3 cut(s) 139, 388, 410
SetI ASST 7 cut(s) 139, 155, 242, 290, 330, 367, 471
SinI GGWCC 2 cut(s) 373, 466
SmaI CCCGGG 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 1 cut(s) 394
SsiI CCGC 3 cut(s) 175, 212, 357
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 3 cut(s) 139, 231, 232
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 26
TasI AATT 1 cut(s) 394
TatI WGTACW 1 cut(s) 88
TauI GCSGC 2 cut(s) 177, 360
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 2 cut(s) 64, 450
TseI GCWGC 1 cut(s) 309
TspDTI ATGAA 2 cut(s) 17, 96
TspMI CCCGGG 1 cut(s) 232
TspRI CASTG 2 cut(s) 64, 450
Vha464I CTTAAG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 373, 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XmaI CCCGGG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.