RLG00000027989

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000576
Physical Location & Seq
Forward (+)
17551040 .. 17552565
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027989

Sequence Viewer

Length: 624 bp
ATGGCAGACTTGGGTATGCTTATTCTCTTCTTCATTGAGCTGGGTGTGGCTGAGGCTGTGTTGATTTCATGGGATGAAGGCGCTGTTTTTTCTGCGTCCAAACTCGATGGTGAAGTAAAAGATGTAGGCTCGTTTGCGGGGATGGCATCTAGGTGGCGGATGAGTGGCGATCCGATCTTGGGTTGGGCTAGATCGGTTCGGAAGGTTCATTTCCGATCGGGTGATGATTTTTGGCATGTCGATGACCTTGCTGTTGTGGAAGACGATGATCTACTGGTTTGCTTGACCTCGAGATCTGCCATCTCTAATGGCGATACGAGGCTGCCGGAGGTGAGACCGACTCTGTTTCCCTCGGGCTCTGACCCTTTGTTGGTAGGGAGGATGACTTCTTTCTACTCATCAGAGGAAGCTGCTTTTGATAGTGGCAACCTGGTGGCCGGGATGTTGGCTGCGAGCTCTGACATCGATGTCTGCGCAGATTGCAACAAAGATCAATGGCAGGACGGGGATGGTCTTGGGCCTATGGTGTTTTGCTCATCGCCTGAACAGTTTCGTCTGGAATCGGGCCCTACTAGTGAAGTTCTTATTGTTTCTGATGTAATTGAGATAGATAGTTCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.3

Weight (kDa)

4.12

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
Acc16I TGCGCA 1 cut(s) 475
AciI CCGC 2 cut(s) 137, 157
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 435
AfiI CCNNNNNNNGG 2 cut(s) 179, 370
AhlI ACTAGT 1 cut(s) 572
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 3 cut(s) 40, 410, 456
AluI AGCT 3 cut(s) 40, 410, 456
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 1 cut(s) 328
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 2 cut(s) 289, 352
AoxI GGCC 3 cut(s) 435, 518, 565
ApaI GGGCCC 1 cut(s) 569
ApeKI GCWGC 3 cut(s) 322, 410, 449
Asp700I GAANNNNTTC 1 cut(s) 549
AspLEI GCGC 2 cut(s) 83, 476
AspS9I GGNCC 3 cut(s) 518, 565, 566
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 122, 233, 343
AvaI CYCGRG 2 cut(s) 289, 352
BaeGI GKGCMC 1 cut(s) 569
BanII GRGCYC 3 cut(s) 359, 458, 569
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 458
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 309, 397, 436
BccI CCATC 4 cut(s) 101, 136, 308, 503
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 1 cut(s) 431
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 328
BcuI ACTAGT 1 cut(s) 572
BfaI CTAG 3 cut(s) 150, 189, 573
BfoI RGCGCY 1 cut(s) 84
BglII AGATCT 1 cut(s) 293
BisI GCNGC 3 cut(s) 323, 411, 450
BlsI GCNGC 3 cut(s) 324, 412, 451
Bme1390I CCNGG 2 cut(s) 431, 439
BmeT110I CYCGRG 2 cut(s) 289, 352
BmgT120I GGNCC 3 cut(s) 518, 565, 566
BmiI GGNNCC 1 cut(s) 567
BmrFI CCNGG 2 cut(s) 431, 439
BmsI GCATC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 267
BplI GAGNNNNNCTC 2 cut(s) 325, 357
Bpu10I CCTNAGC 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 439
Bsa29I ATCGAT 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 351
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 370
Bse1I ACTGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 431
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 6 cut(s) 79, 147, 165, 387, 447, 514
BseLI CCNNNNNNNGG 2 cut(s) 179, 370
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 569
BseXI GCAGC 3 cut(s) 309, 397, 436
BseYI CCCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 218
BshFI GGCC 3 cut(s) 437, 520, 567
BshVI ATCGAT 1 cut(s) 465
BsiEI CGRYCG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 458
BsiHKCI CYCGRG 2 cut(s) 289, 352
BsiSI CCGG 2 cut(s) 326, 438
BslI CCNNNNNNNGG 2 cut(s) 179, 370
BsmAI GTCTC 1 cut(s) 328
BsnI GGCC 3 cut(s) 437, 520, 567
Bso31I GGTCTC 1 cut(s) 328
BsoBI CYCGRG 2 cut(s) 289, 352
Bsp120I GGGCCC 1 cut(s) 565
Bsp1286I GDGCHC 3 cut(s) 359, 458, 569
Bsp143I GATC 7 cut(s) 169, 174, 191, 215, 268, 293, 490
BspACI CCGC 2 cut(s) 137, 157
BspANI GGCC 3 cut(s) 437, 520, 567
BspCNI CTCAG 1 cut(s) 43
BspDI ATCGAT 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 567
BspPI GGATC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 7 cut(s) 169, 174, 191, 215, 268, 293, 490
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 549
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 2 cut(s) 51, 621
BstF5I GGATG 6 cut(s) 79, 147, 165, 387, 447, 514
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 2 cut(s) 83, 476
BstKTI GATC 7 cut(s) 172, 177, 194, 218, 271, 296, 493
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 7 cut(s) 169, 174, 191, 215, 268, 293, 490
BstMCI CGRYCG 1 cut(s) 218
BstMWI GCNNNNNNNGC 2 cut(s) 143, 480
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 429, 437
BstSLI GKGCMC 1 cut(s) 569
BstV1I GCAGC 3 cut(s) 309, 397, 436
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 3 cut(s) 437, 520, 567
BsuTUI ATCGAT 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 522
BtsCI GGATG 6 cut(s) 79, 147, 165, 387, 447, 514
Cac8I GCNNGC 1 cut(s) 454
CfoI GCGC 2 cut(s) 83, 476
Cfr13I GGNCC 3 cut(s) 518, 565, 566
ClaI ATCGAT 1 cut(s) 465
CseI GACGC 1 cut(s) 84
CsiI ACCWGGT 1 cut(s) 429
CviAII CATG 2 cut(s) 69, 236
DdeI CTNAG 2 cut(s) 51, 621
DpnI GATC 7 cut(s) 171, 176, 193, 217, 270, 295, 492
DpnII GATC 7 cut(s) 169, 174, 191, 215, 268, 293, 490
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 456
Eco24I GRGCYC 3 cut(s) 359, 458, 569
Eco31I GGTCTC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 456
Eco88I CYCGRG 2 cut(s) 289, 352
EcoICRI GAGCTC 1 cut(s) 456
EcoO109I RGGNCCY 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 429
EcoT38I GRGCYC 3 cut(s) 359, 458, 569
FaeI CATG 2 cut(s) 72, 239
FaiI YATR 4 cut(s) 17, 70, 237, 524
FatI CATG 2 cut(s) 68, 235
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 3 cut(s) 323, 411, 450
FokI GGATG 6 cut(s) 86, 154, 172, 394, 454, 521
FriOI GRGCYC 3 cut(s) 359, 458, 569
Fsp4HI GCNGC 3 cut(s) 323, 411, 450
FspBI CTAG 3 cut(s) 150, 189, 573
FspI TGCGCA 1 cut(s) 475
GlaI GCGC 2 cut(s) 82, 475
GluI GCNGC 3 cut(s) 323, 411, 450
GsaI CCCAGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 3 cut(s) 437, 520, 567
HapII CCGG 2 cut(s) 326, 438
HgaI GACGC 1 cut(s) 84
HhaI GCGC 2 cut(s) 83, 476
Hin1II CATG 2 cut(s) 72, 239
Hin6I GCGC 2 cut(s) 81, 474
HinP1I GCGC 2 cut(s) 81, 474
HinfI GANTC 2 cut(s) 340, 560
HpaII CCGG 2 cut(s) 326, 438
HphI GGTGA 3 cut(s) 122, 233, 343
Hpy188I TCNGA 7 cut(s) 174, 201, 215, 361, 403, 460, 595
Hpy188III TCNNGA 2 cut(s) 291, 557
HpyAV CCTTC 2 cut(s) 71, 196
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4V TGCA 1 cut(s) 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 480
HpyF3I CTNAG 2 cut(s) 51, 621
Hsp92II CATG 2 cut(s) 72, 239
HspAI GCGC 2 cut(s) 81, 474
Kzo9I GATC 7 cut(s) 169, 174, 191, 215, 268, 293, 490
LpnPI CCDG 9 cut(s) 26, 260, 339, 416, 443, 451, 485, 542, 555
Lsp1109I GCAGC 3 cut(s) 309, 397, 436
LweI GCATC 1 cut(s) 155
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 3 cut(s) 150, 189, 573
MalI GATC 7 cut(s) 171, 176, 193, 217, 270, 295, 492
MboI GATC 7 cut(s) 169, 174, 191, 215, 268, 293, 490
MboII GAAGA 3 cut(s) 19, 22, 272
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 3 cut(s) 359, 458, 569
MluCI AATT 1 cut(s) 600
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 7 cut(s) 46, 298, 312, 322, 361, 372, 397
MroXI GAANNNNTTC 1 cut(s) 549
MslI CAYNNNNRTG 2 cut(s) 151, 240
MspI CCGG 2 cut(s) 326, 438
MspR9I CCNGG 2 cut(s) 431, 439
MvaI CCWGG 1 cut(s) 431
MwoI GCNNNNNNNGC 2 cut(s) 143, 480
NciI CCSGG 1 cut(s) 439
NdeII GATC 7 cut(s) 169, 174, 191, 215, 268, 293, 490
NlaIII CATG 2 cut(s) 72, 239
NlaIV GGNNCC 1 cut(s) 567
NsbI TGCGCA 1 cut(s) 475
NspI RCATGY 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 560
PkrI GCNGC 3 cut(s) 324, 412, 451
Ple19I CGATCG 1 cut(s) 218
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp124BI GAGCTC 1 cut(s) 458
Psp6I CCWGG 1 cut(s) 429
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 567
PspOMI GGGCCC 1 cut(s) 565
PspPI GGNCC 3 cut(s) 518, 565, 566
PsuI RGATCY 1 cut(s) 293
PvuI CGATCG 1 cut(s) 218
RseI CAYNNNNRTG 2 cut(s) 151, 240
SacI GAGCTC 1 cut(s) 458
SatI GCNGC 3 cut(s) 323, 411, 450
Sau3AI GATC 7 cut(s) 169, 174, 191, 215, 268, 293, 490
Sau96I GGNCC 3 cut(s) 518, 565, 566
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 431, 439
SduI GDGCHC 3 cut(s) 359, 458, 569
SetI ASST 9 cut(s) 42, 155, 207, 249, 290, 333, 412, 432, 458
SexAI ACCWGGT 1 cut(s) 429
SfaNI GCATC 1 cut(s) 155
Sfr274I CTCGAG 1 cut(s) 289
SlaI CTCGAG 1 cut(s) 289
SmiMI CAYNNNNRTG 2 cut(s) 151, 240
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
SpeI ACTAGT 1 cut(s) 572
Sse9I AATT 1 cut(s) 600
SsiI CCGC 2 cut(s) 137, 157
SspMI CTAG 3 cut(s) 150, 189, 573
SstI GAGCTC 1 cut(s) 458
StyD4I CCNGG 2 cut(s) 429, 437
TaaI ACNGT 1 cut(s) 549
TaqI TCGA 4 cut(s) 105, 240, 290, 465
TaqII GACCGA 1 cut(s) 352
TasI AATT 1 cut(s) 600
TfiI GAWTC 1 cut(s) 560
TseI GCWGC 3 cut(s) 322, 410, 449
TspDTI ATGAA 5 cut(s) 22, 57, 90, 197, 606
XceI RCATGY 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 3 cut(s) 150, 189, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.