Rh1CG092500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000576
Physical Location & Seq
Reverse (-)
19779529 .. 19780767
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG092500.1

Sequence Viewer

Length: 579 bp
ATGCAAATCGACACTTTTCAACCTAGCGCTTTGCTAGGGTTTCGAAATCCTCTTCCTCTGGGCAGTGGATTTTCGCACTTTCGCTGTTGCTCGTCAATGGTGGTGATGGCAGATTTTGGTCTGCTTATTCCCTTCTTGATTGTTTTGGGGGACGCGGAGGTTGTGTTGAGTTCGGGGGTTGGAGGCGTTGTTGTTTCTGCGTCCAAGCTCAATGGTGAAGTAAAAGATGCGGCCTCGTGGGTGGGGATGGCATCTTGCTGGCAGATTAGCAGCGATCCAGTCTTGGTTTGGTCAAGATTGGATCAGACAGGTCGATTCCGATCGAGTCCATGGGATGATGGTGTACCTGTTGTAGGTGTTGATCTTTGGCGTGCCGATGATCTTGCTGTCACGGACGGTGATGGAGTGTTGGTTAGCTCAGACTCAGGGACTACTGATTCTAATGGTGGTGTTCATGGGTATAACGGCTGCAAGTATAGAGGCAAGGGTGACAGTCAAATCACACCGGGGTTGTCGGAGATGAGGTCGGATCTATTTCCCTCGGGCCCGGGCCTTTCGTTGGCGGGGATGAAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

20.1

Weight (kDa)

4.6

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 155
AciI CCGC 3 cut(s) 155, 230, 563
AclWI GGATC 3 cut(s) 269, 309, 537
AfaI GTAC 1 cut(s) 345
AfeI AGCGCT 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 353, 559
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 2 cut(s) 208, 417
AluI AGCT 2 cut(s) 208, 417
AlwI GGATC 3 cut(s) 269, 309, 537
Ama87I CYCGRG 2 cut(s) 541, 547
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 3 cut(s) 231, 544, 550
ApaI GGGCCC 1 cut(s) 548
ApeKI GCWGC 2 cut(s) 270, 468
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 544, 545, 550
AsuC2I CCSGG 3 cut(s) 507, 548, 549
AsuHPI GGTGA 4 cut(s) 115, 227, 410, 500
AsuII TTCGAA 1 cut(s) 43
AvaI CYCGRG 2 cut(s) 541, 547
BaeGI GKGCMC 1 cut(s) 548
BanII GRGCYC 1 cut(s) 548
BauI CACGAG 1 cut(s) 235
BbvI GCAGC 2 cut(s) 282, 455
BccI CCATC 4 cut(s) 100, 241, 332, 395
BceAI ACGGC 1 cut(s) 481
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BcnI CCSGG 3 cut(s) 507, 548, 549
BfaI CTAG 2 cut(s) 24, 35
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 3 cut(s) 231, 271, 469
BlsI GCNGC 3 cut(s) 232, 272, 470
Bme1390I CCNGG 3 cut(s) 507, 548, 549
BmeT110I CYCGRG 2 cut(s) 541, 547
BmgT120I GGNCC 3 cut(s) 544, 545, 550
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 3 cut(s) 507, 548, 549
BmsI GCATC 2 cut(s) 217, 260
Bpu14I TTCGAA 1 cut(s) 43
BpuMI CCSGG 3 cut(s) 507, 548, 549
BsaBI GATNNNNATC 1 cut(s) 319
BsaJI CCNNGG 4 cut(s) 329, 506, 540, 547
BsaXI ACNNNNNCTCC 8 cut(s) 149, 174, 179, 204, 396, 426, 509, 539
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 559
Bse1I ACTGG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 319
BseDI CCNNGG 4 cut(s) 329, 506, 540, 547
BseGI GGATG 3 cut(s) 252, 340, 573
BseJI GATNNNNATC 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 353, 559
BseMII CTCAG 2 cut(s) 432, 438
BseNI ACTGG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 548
BseXI GCAGC 2 cut(s) 282, 455
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 3 cut(s) 233, 546, 552
BsiEI CGRYCG 1 cut(s) 323
BsiHKCI CYCGRG 2 cut(s) 541, 547
BsiSI CCGG 2 cut(s) 506, 548
BslFI GGGAC 2 cut(s) 164, 442
BslI CCNNNNNNNGG 2 cut(s) 353, 559
BsmFI GGGAC 2 cut(s) 164, 442
BsnI GGCC 3 cut(s) 233, 546, 552
BsoBI CYCGRG 2 cut(s) 541, 547
Bsp119I TTCGAA 1 cut(s) 43
Bsp120I GGGCCC 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 6 cut(s) 274, 301, 320, 361, 379, 529
Bsp19I CCATGG 1 cut(s) 329
BspACI CCGC 3 cut(s) 155, 230, 563
BspANI GGCC 3 cut(s) 233, 546, 552
BspCNI CTCAG 2 cut(s) 431, 437
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 546
BspPI GGATC 3 cut(s) 269, 309, 537
BspT104I TTCGAA 1 cut(s) 43
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 4 cut(s) 329, 506, 540, 547
BssMI GATC 6 cut(s) 274, 301, 320, 361, 379, 529
BssSI CACGAG 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 398, 494
Bst6I CTCTTC 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 43
BstC8I GCNNGC 2 cut(s) 260, 372
BstDEI CTNAG 2 cut(s) 418, 424
BstDSI CCRYGG 1 cut(s) 329
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 252, 340, 573
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 6 cut(s) 277, 304, 323, 364, 382, 532
BstMBI GATC 6 cut(s) 274, 301, 320, 361, 379, 529
BstMCI CGRYCG 1 cut(s) 323
BstSCI CCNGG 3 cut(s) 505, 546, 547
BstSLI GKGCMC 1 cut(s) 548
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 282, 455
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 3 cut(s) 233, 546, 552
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 3 cut(s) 252, 340, 573
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 260, 372
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 544, 545, 550
Cfr9I CCCGGG 1 cut(s) 547
CseI GACGC 2 cut(s) 161, 189
Csp6I GTAC 1 cut(s) 344
CviAII CATG 2 cut(s) 330, 455
CviJI RGCY 6 cut(s) 208, 233, 417, 468, 546, 552
CviKI_1 RGCY 6 cut(s) 208, 233, 417, 468, 546, 552
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 2 cut(s) 418, 424
DpnI GATC 6 cut(s) 276, 303, 322, 363, 381, 531
DpnII GATC 6 cut(s) 274, 301, 320, 361, 379, 529
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 548
Eco47III AGCGCT 1 cut(s) 28
Eco88I CYCGRG 2 cut(s) 541, 547
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 2 cut(s) 333, 458
FaiI YATR 4 cut(s) 331, 456, 462, 477
FaqI GGGAC 2 cut(s) 164, 442
FatI CATG 2 cut(s) 329, 454
FauI CCCGC 1 cut(s) 556
Fnu4HI GCNGC 3 cut(s) 231, 271, 469
FokI GGATG 2 cut(s) 259, 347
FriOI GRGCYC 1 cut(s) 548
Fsp4HI GCNGC 3 cut(s) 231, 271, 469
FspBI CTAG 2 cut(s) 24, 35
GlaI GCGC 1 cut(s) 28
GluI GCNGC 3 cut(s) 231, 271, 469
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 3 cut(s) 233, 546, 552
HapII CCGG 2 cut(s) 506, 548
HgaI GACGC 2 cut(s) 161, 189
HhaI GCGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 333, 458
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 4 cut(s) 315, 325, 422, 437
HpaII CCGG 2 cut(s) 506, 548
HphI GGTGA 4 cut(s) 115, 227, 410, 500
Hpy166II GTNNAC 1 cut(s) 344
Hpy188I TCNGA 5 cut(s) 306, 320, 421, 517, 529
Hpy188III TCNNGA 2 cut(s) 136, 294
Hpy8I GTNNAC 1 cut(s) 344
HpyAV CCTTC 2 cut(s) 142, 565
HpyCH4III ACNGT 2 cut(s) 398, 494
HpyCH4V TGCA 2 cut(s) 4, 471
HpyF3I CTNAG 2 cut(s) 418, 424
Hsp92II CATG 2 cut(s) 333, 458
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 6 cut(s) 274, 301, 320, 361, 379, 529
LpnPI CCDG 8 cut(s) 44, 244, 291, 294, 360, 411, 519, 561
Lsp1109I GCAGC 2 cut(s) 282, 455
LweI GCATC 2 cut(s) 217, 260
MaeI CTAG 2 cut(s) 24, 35
MaeIII GTNAC 2 cut(s) 388, 488
MalI GATC 6 cut(s) 276, 303, 322, 363, 381, 531
MboI GATC 6 cut(s) 274, 301, 320, 361, 379, 529
MboII GAAGA 1 cut(s) 44
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 548
MlyI GAGTC 2 cut(s) 334, 416
MmeI TCCRAC 3 cut(s) 160, 495, 507
MnlI CCTC 8 cut(s) 60, 66, 151, 176, 244, 473, 516, 550
MspI CCGG 2 cut(s) 506, 548
MspR9I CCNGG 3 cut(s) 507, 548, 549
MvnI CGCG 1 cut(s) 155
NciI CCSGG 3 cut(s) 507, 548, 549
NcoI CCATGG 1 cut(s) 329
NdeII GATC 6 cut(s) 274, 301, 320, 361, 379, 529
NlaIII CATG 2 cut(s) 333, 458
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 2 cut(s) 388, 488
NspV TTCGAA 1 cut(s) 43
PfeI GAWTC 2 cut(s) 315, 437
PkrI GCNGC 3 cut(s) 232, 272, 470
Ple19I CGATCG 1 cut(s) 323
PleI GAGTC 2 cut(s) 333, 416
PpsI GAGTC 2 cut(s) 333, 416
PspN4I GGNNCC 1 cut(s) 546
PspOMI GGGCCC 1 cut(s) 544
PspPI GGNCC 3 cut(s) 544, 545, 550
PsuI RGATCY 1 cut(s) 529
PvuI CGATCG 1 cut(s) 323
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
SatI GCNGC 3 cut(s) 231, 271, 469
Sau3AI GATC 6 cut(s) 274, 301, 320, 361, 379, 529
Sau96I GGNCC 3 cut(s) 544, 545, 550
SchI GAGTC 2 cut(s) 334, 416
ScrFI CCNGG 3 cut(s) 507, 548, 549
SduI GDGCHC 1 cut(s) 548
SetI ASST 9 cut(s) 25, 162, 210, 313, 349, 358, 419, 527, 576
SfaNI GCATC 2 cut(s) 217, 260
SfuI TTCGAA 1 cut(s) 43
SmaI CCCGGG 1 cut(s) 549
SrfI GCCCGGGC 1 cut(s) 549
SsiI CCGC 3 cut(s) 155, 230, 563
SspMI CTAG 2 cut(s) 24, 35
StyD4I CCNGG 3 cut(s) 505, 546, 547
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 2 cut(s) 398, 494
TaqI TCGA 4 cut(s) 9, 43, 313, 323
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 2 cut(s) 315, 437
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 388, 488
TseI GCWGC 2 cut(s) 270, 468
Tsp45I GTSAC 2 cut(s) 388, 488
TspDTI ATGAA 1 cut(s) 443
TspGWI ACGGA 1 cut(s) 407
TspMI CCCGGG 1 cut(s) 547
TspRI CASTG 1 cut(s) 70
XagI CCTNNNNNAGG 1 cut(s) 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XmaI CCCGGG 1 cut(s) 547
XspI CTAG 2 cut(s) 24, 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.