RLG00000035012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000576
Physical Location & Seq
Reverse (-)
59139617 .. 59140117
501 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035012

Sequence Viewer

Length: 408 bp
ATGGCAGGTCTTGATCTACTTATGCTTTTCTTGATCGCGTTGGGGAACACTGATGCGGTATTGCGTTTGGGGGTTGCATGTGCTGTTGTTTCTGCGTCCAAACTTGATGGTGCAGTGAAAGATGCAGCCTCGTGGGAGGGGATGGCATCTAGATGGCATGTTGCTCTGTGGCGTGCCGGCGATCTTGTTGTCCCGAATGGTGACGGAGTGCTGGCTTGCTCGAAACCAGGGACTATTGTTTCTGATGGTGGTGCTCATGGATCTAACGATTGCAAGTATGGAGGCAAGAGTGGCTGTCGAAACCAACCGGGGCTGCCGGAGATGAGGACGGATCTGCTTACCCCCCGCCCGGGCACTCCAATGGCAGGGATAATGGTATGGCTCTGCTTCGGAGATGATTACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.03

Weight (kDa)

5.51

Isoelectric Point (pI)

28.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 56, 346
AclWI GGATC 2 cut(s) 268, 339
AfiI CCNNNNNNNGG 3 cut(s) 349, 350, 365
AjnI CCWGG 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 256
AlwI GGATC 2 cut(s) 268, 339
Ama87I CYCGRG 1 cut(s) 349
ApeKI GCWGC 2 cut(s) 125, 313
AsuC2I CCSGG 3 cut(s) 309, 350, 351
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 356
BauI CACGAG 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 137, 300
BccI CCATC 4 cut(s) 101, 136, 147, 239
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 3 cut(s) 309, 350, 351
BfaI CTAG 1 cut(s) 150
BisI GCNGC 2 cut(s) 126, 314
BlsI GCNGC 2 cut(s) 127, 315
Bme1390I CCNGG 4 cut(s) 228, 309, 350, 351
BmeT110I CYCGRG 1 cut(s) 349
BmrFI CCNGG 4 cut(s) 228, 309, 350, 351
BmsI GCATC 3 cut(s) 43, 112, 155
BpuMI CCSGG 3 cut(s) 309, 350, 351
BsaJI CCNNGG 3 cut(s) 227, 308, 349
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 350, 365
Bse118I RCCGGY 1 cut(s) 176
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 227, 308, 349
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 349, 350, 365
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 2 cut(s) 137, 300
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 4 cut(s) 177, 308, 317, 350
BslFI GGGAC 2 cut(s) 176, 244
BslI CCNNNNNNNGG 3 cut(s) 349, 350, 365
BsmFI GGGAC 2 cut(s) 176, 244
BsoBI CYCGRG 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 256, 356
Bsp143I GATC 5 cut(s) 13, 33, 181, 260, 331
BspACI CCGC 2 cut(s) 56, 346
BspFNI CGCG 1 cut(s) 38
BspPI GGATC 2 cut(s) 268, 339
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 227, 308, 349
BssMI GATC 5 cut(s) 13, 33, 181, 260, 331
BssSI CACGAG 1 cut(s) 130
Bst2BI CACGAG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 228
BstC8I GCNNGC 4 cut(s) 174, 178, 213, 217
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 5 cut(s) 16, 36, 184, 263, 334
BstMBI GATC 5 cut(s) 13, 33, 181, 260, 331
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 2 cut(s) 81, 161
BstSCI CCNGG 4 cut(s) 226, 307, 348, 349
BstSLI GKGCMC 1 cut(s) 356
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 137, 300
BstX2I RGATCY 2 cut(s) 260, 331
BstYI RGATCY 2 cut(s) 260, 331
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 48, 120
Cac8I GCNNGC 4 cut(s) 174, 178, 213, 217
Cfr10I RCCGGY 1 cut(s) 176
Cfr9I CCCGGG 1 cut(s) 349
CseI GACGC 1 cut(s) 84
CviAII CATG 3 cut(s) 78, 158, 257
CviJI RGCY 5 cut(s) 128, 215, 294, 313, 382
CviKI_1 RGCY 5 cut(s) 128, 215, 294, 313, 382
DpnI GATC 5 cut(s) 15, 35, 183, 262, 333
DpnII GATC 5 cut(s) 13, 33, 181, 260, 331
Eco88I CYCGRG 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 226
FaeI CATG 3 cut(s) 81, 161, 260
FaiI YATR 6 cut(s) 23, 79, 159, 258, 279, 379
FaqI GGGAC 2 cut(s) 176, 244
FatI CATG 3 cut(s) 77, 157, 256
FauI CCCGC 1 cut(s) 353
Fnu4HI GCNGC 2 cut(s) 126, 314
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 126, 314
FspBI CTAG 1 cut(s) 150
GluI GCNGC 2 cut(s) 126, 314
HapII CCGG 4 cut(s) 177, 308, 317, 350
HgaI GACGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 81, 161, 260
HpaII CCGG 4 cut(s) 177, 308, 317, 350
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 3 cut(s) 244, 392, 407
Hpy188III TCNNGA 4 cut(s) 11, 31, 150, 193
HpyCH4V TGCA 4 cut(s) 77, 113, 125, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
Hsp92II CATG 3 cut(s) 81, 161, 260
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 5 cut(s) 13, 33, 181, 260, 331
LpnPI CCDG 8 cut(s) 190, 197, 213, 240, 321, 330, 351, 363
Lsp1109I GCAGC 2 cut(s) 137, 300
LweI GCATC 3 cut(s) 43, 112, 155
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 200
MalI GATC 5 cut(s) 15, 35, 183, 262, 333
MboI GATC 5 cut(s) 13, 33, 181, 260, 331
MflI RGATCY 2 cut(s) 260, 331
MhlI GDGCHC 2 cut(s) 256, 356
MnlI CCTC 4 cut(s) 130, 139, 275, 318
MroNI GCCGGC 1 cut(s) 176
MslI CAYNNNNRTG 2 cut(s) 151, 359
MspI CCGG 4 cut(s) 177, 308, 317, 350
MspR9I CCNGG 4 cut(s) 228, 309, 350, 351
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 291
NaeI GCCGGC 1 cut(s) 178
NciI CCSGG 3 cut(s) 309, 350, 351
NdeII GATC 5 cut(s) 13, 33, 181, 260, 331
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 3 cut(s) 81, 161, 260
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 2 cut(s) 81, 161
PdiI GCCGGC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 127, 315
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PsuI RGATCY 2 cut(s) 260, 331
RseI CAYNNNNRTG 2 cut(s) 151, 359
SatI GCNGC 2 cut(s) 126, 314
Sau3AI GATC 5 cut(s) 13, 33, 181, 260, 331
ScrFI CCNGG 4 cut(s) 228, 309, 350, 351
SduI GDGCHC 2 cut(s) 256, 356
SetI ASST 2 cut(s) 10, 405
SfaNI GCATC 3 cut(s) 43, 112, 155
SmaI CCCGGG 1 cut(s) 351
SmiMI CAYNNNNRTG 2 cut(s) 151, 359
SrfI GCCCGGGC 1 cut(s) 351
SsiI CCGC 2 cut(s) 56, 346
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 226, 307, 348, 349
TaqI TCGA 2 cut(s) 221, 298
TscAI CASTG 2 cut(s) 55, 120
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 125, 313
Tsp45I GTSAC 1 cut(s) 200
TspGWI ACGGA 2 cut(s) 219, 344
TspMI CCCGGG 1 cut(s) 349
TspRI CASTG 2 cut(s) 55, 120
XbaI TCTAGA 1 cut(s) 149
XceI RCATGY 2 cut(s) 81, 161
XmaI CCCGGG 1 cut(s) 349
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.