Rh3AG326600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000576
Physical Location & Seq
Reverse (-)
46322211 .. 46337216
15006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG326600.1

Sequence Viewer

Length: 600 bp
ATGGCGGATCTTGGTCTGCTTATTCTCTTCCTCGTGGCGCTGGGTAGCGCTGAGGCTGTGTTGGTGTCGGGGGTTGGAGGCGTTGTTGGATCCGCGTCCAAGCTTGACAGTGAAGTGCAAGATGCAGCCTCGTTTGCGGGGATGGCATCTCGGTGGTGGGTGAGTGGTGATCCGGTCTTGGTTTGGTCAAGATCGGATCGGCGGGGTCGATTCCGATCAGATCCAAGGGACGATGGTGCATCTAAGAATGGCATCTTGATTAACCAAATCTGGTTTGGTGTTCCTATTGATAGTGATGATGGATCTACTCTTGATCCATCAATCTATGGCGGAGGCCAGGTTACTCTTGTTGGGGGTGGTGGTGATTTGTGGTGGGGTTGCGTGCAACAGTGCGGCGAATCTGGGAGAGGTGATAGCTTCGGCTTCTTCTCCTCTTCGTTGGAATCTTCCGATGGTTGTAGCGAGAAGGAAGGCGCCTCGAATGGTGGTGGTGTGGCGGTATGGGGTTGCCGGATGATTGAGATATTGCCGGATCTTCTTCCGGGTCGCGGTGCGGCTCGGGTTAAAACCAAGGTCGTGTCTAGAGGATTTGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

20.61

Weight (kDa)

4.76

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 473
AccII CGCG 2 cut(s) 95, 549
AciI CCGC 9 cut(s) 5, 93, 137, 202, 330, 393, 497, 549, 554
AclWI GGATC 9 cut(s) 15, 84, 97, 164, 204, 215, 308, 310, 540
AcyI GRCGYC 1 cut(s) 474
AfeI AGCGCT 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 548
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 2 cut(s) 103, 417
AluI AGCT 2 cut(s) 103, 417
AlwI GGATC 9 cut(s) 15, 84, 97, 164, 204, 215, 308, 310, 540
Ama87I CYCGRG 1 cut(s) 558
Aor51HI AGCGCT 1 cut(s) 49
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 125
AspLEI GCGC 3 cut(s) 40, 50, 476
AsuC2I CCSGG 1 cut(s) 543
AsuHPI GGTGA 4 cut(s) 172, 179, 374, 422
AvaI CYCGRG 1 cut(s) 558
BamHI GGATCC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 473
BauI CACGAG 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 137
BccI CCATC 5 cut(s) 136, 227, 293, 325, 446
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 1 cut(s) 543
BfaI CTAG 1 cut(s) 582
BfoI RGCGCY 3 cut(s) 41, 51, 477
BisI GCNGC 3 cut(s) 126, 394, 555
BlsI GCNGC 3 cut(s) 127, 395, 556
Bme1390I CCNGG 2 cut(s) 338, 543
BmeT110I CYCGRG 1 cut(s) 558
BmiI GGNNCC 2 cut(s) 91, 475
BmrFI CCNGG 2 cut(s) 338, 543
BmsI GCATC 4 cut(s) 112, 155, 248, 261
Bpu10I CCTNAGC 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 543
BsaBI GATNNNNATC 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 474
BsaJI CCNNGG 2 cut(s) 224, 570
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 324, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse8I GATNNNNATC 1 cut(s) 214
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 224, 570
BseGI GGATG 2 cut(s) 147, 519
BseJI GATNNNNATC 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 421
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 40
Bsh1236I CGCG 2 cut(s) 95, 549
BshFI GGCC 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 473
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 4 cut(s) 173, 511, 530, 542
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 548
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 558
BspACI CCGC 9 cut(s) 5, 93, 137, 202, 330, 393, 497, 549, 554
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 2 cut(s) 95, 549
BspLI GGNNCC 2 cut(s) 91, 475
BspPI GGATC 9 cut(s) 15, 84, 97, 164, 204, 215, 308, 310, 540
BspT107I GGYRCC 1 cut(s) 473
BssECI CCNNGG 2 cut(s) 224, 570
BssNI GRCGYC 1 cut(s) 474
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 224, 570
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 110, 390
Bst6I CTCTTC 2 cut(s) 32, 439
BstACI GRCGYC 1 cut(s) 474
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 2 cut(s) 51, 243
BstF5I GGATG 2 cut(s) 147, 519
BstFNI CGCG 2 cut(s) 95, 549
BstH2I RGCGCY 3 cut(s) 41, 51, 477
BstHHI GCGC 3 cut(s) 40, 50, 476
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 336, 541
BstUI CGCG 2 cut(s) 95, 549
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 5 cut(s) 7, 89, 220, 302, 532
BstYI RGATCY 5 cut(s) 7, 89, 220, 302, 532
BsuRI GGCC 1 cut(s) 336
BtsCI GGATG 2 cut(s) 147, 519
BtsIMutI CAGTG 2 cut(s) 115, 395
Cac8I GCNNGC 1 cut(s) 383
CfoI GCGC 3 cut(s) 40, 50, 476
CseI GACGC 1 cut(s) 84
CviJI RGCY 7 cut(s) 56, 103, 128, 336, 417, 423, 557
CviKI_1 RGCY 7 cut(s) 56, 103, 128, 336, 417, 423, 557
DdeI CTNAG 2 cut(s) 51, 243
DinI GGCGCC 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 32, 439
EarI CTCTTC 2 cut(s) 32, 439
EciI GGCGGA 2 cut(s) 20, 345
Eco130I CCWWGG 2 cut(s) 224, 570
Eco47III AGCGCT 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 558
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 224, 570
EgeI GGCGCC 1 cut(s) 475
EheI GGCGCC 1 cut(s) 475
ErhI CCWWGG 2 cut(s) 224, 570
FaiI YATR 2 cut(s) 327, 502
FaqI GGGAC 1 cut(s) 242
FauI CCCGC 2 cut(s) 130, 195
Fnu4HI GCNGC 3 cut(s) 126, 394, 555
FokI GGATG 2 cut(s) 154, 526
Fsp4HI GCNGC 3 cut(s) 126, 394, 555
FspBI CTAG 1 cut(s) 582
GlaI GCGC 3 cut(s) 39, 49, 475
GluI GCNGC 3 cut(s) 126, 394, 555
GsaI CCCAGC 1 cut(s) 44
HaeII RGCGCY 3 cut(s) 41, 51, 477
HaeIII GGCC 1 cut(s) 336
HapII CCGG 4 cut(s) 173, 511, 530, 542
HgaI GACGC 1 cut(s) 84
HhaI GCGC 3 cut(s) 40, 50, 476
Hin1I GRCGYC 1 cut(s) 474
Hin6I GCGC 3 cut(s) 38, 48, 474
HinP1I GCGC 3 cut(s) 38, 48, 474
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 3 cut(s) 210, 398, 443
HpaII CCGG 4 cut(s) 173, 511, 530, 542
HphI GGTGA 4 cut(s) 172, 179, 374, 422
Hpy188I TCNGA 4 cut(s) 196, 215, 220, 451
Hpy188III TCNNGA 4 cut(s) 189, 256, 311, 582
HpyAV CCTTC 2 cut(s) 460, 464
HpyCH4III ACNGT 2 cut(s) 110, 390
HpyCH4V TGCA 4 cut(s) 118, 125, 239, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
HpyF3I CTNAG 2 cut(s) 51, 243
Hsp92I GRCGYC 1 cut(s) 474
HspAI GCGC 3 cut(s) 38, 48, 474
KasI GGCGCC 1 cut(s) 473
LpnPI CCDG 9 cut(s) 26, 186, 256, 323, 350, 387, 524, 543, 555
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 4 cut(s) 112, 155, 248, 261
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 1 cut(s) 340
MboII GAAGA 6 cut(s) 19, 418, 426, 438, 527, 530
MflI RGATCY 5 cut(s) 7, 89, 220, 302, 532
Mly113I GGCGCC 1 cut(s) 474
MmeI TCCRAC 3 cut(s) 55, 67, 420
MnlI CCTC 9 cut(s) 41, 46, 71, 139, 326, 401, 442, 487, 578
MseI TTAA 2 cut(s) 261, 564
MslI CAYNNNNRTG 1 cut(s) 151
MspI CCGG 4 cut(s) 173, 511, 530, 542
MspR9I CCNGG 2 cut(s) 338, 543
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 2 cut(s) 95, 549
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NarI GGCGCC 1 cut(s) 474
NciI CCSGG 1 cut(s) 543
NlaIV GGNNCC 2 cut(s) 91, 475
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 3 cut(s) 210, 398, 443
PkrI GCNGC 3 cut(s) 127, 395, 556
PluTI GGCGCC 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 91, 475
PsuI RGATCY 5 cut(s) 7, 89, 220, 302, 532
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 2 cut(s) 261, 564
SatI GCNGC 3 cut(s) 126, 394, 555
ScrFI CCNGG 2 cut(s) 338, 543
SetI ASST 5 cut(s) 105, 342, 412, 419, 576
SfaNI GCATC 4 cut(s) 112, 155, 248, 261
SfoI GGCGCC 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 151
SsiI CCGC 9 cut(s) 5, 93, 137, 202, 330, 393, 497, 549, 554
SspDI GGCGCC 1 cut(s) 473
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 336, 541
StyI CCWWGG 2 cut(s) 224, 570
TaaI ACNGT 2 cut(s) 110, 390
TaqI TCGA 2 cut(s) 208, 479
TauI GCSGC 2 cut(s) 396, 557
TfiI GAWTC 3 cut(s) 210, 398, 443
Tru1I TTAA 2 cut(s) 261, 564
Tru9I TTAA 2 cut(s) 261, 564
TscAI CASTG 2 cut(s) 115, 395
TseI GCWGC 1 cut(s) 125
TspRI CASTG 2 cut(s) 115, 395
XbaI TCTAGA 1 cut(s) 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.