Rh4CG191700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000576
Physical Location & Seq
Reverse (-)
41209102 .. 41222142
13041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG191700.1

Sequence Viewer

Length: 633 bp
ATGGTAGGTCTTGATCTGCTTATGTTTTTCTTGATCGCGTTGGGGAACACTGATGTAGTATTGCGTTCGGGGGTTGCATGTGCTGTTGTTTCTGCGTCCAAACTTGATGGTGCAGTGAAAGATGCATCCTCGTGGGAGGGTATGGCATCTAGATGGCAGTTGAGCAGCGATCCGGTCTTGGTTTGGTCAAGATCGGATCGGAAAGGCTTATTTCGATGGAGTCCATGGGACGATGGTGTACCTGTTCCAAGTGTTGATCTGTGGCGTGCCGGTGATCTTGCTGTCCCTGATGGTGACGGAGTGCTGGCTTGCTCGAAACTAGGGACTATTGTTTCTGATAGTGGTGCTCATGGATCTAACGACAGCAAGTATGGTGGCAAGAGCAGCTGTCGAAACCAACCGGGATTGCCGGAGATGAGGACGGATCTGCTTACCCCTGGCCCGGGCACTCCAGTGGCAGGGATAATGGTATGGCTCTGCTCTTCGGAGAAGATTACCTTTGATGGTGATGTTGCCTGGTGCAGCGATGGGTTTTACCACGTAGGTGGTGGCGGTGGCTTGTTGGTTGGCGGCAACGGTGTGCCGGTCCGAACCATTGCTATACATAAGAAGACTGGCAATGAATTAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

21.98

Weight (kDa)

5.28

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 552, 570
AclWI GGATC 4 cut(s) 164, 204, 361, 432
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 3 cut(s) 442, 443, 458
AjnI CCWGG 2 cut(s) 436, 515
AleI CACNNNNGTG 2 cut(s) 452, 543
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
Alw21I GWGCWC 1 cut(s) 349
AlwI GGATC 4 cut(s) 164, 204, 361, 432
Ama87I CYCGRG 1 cut(s) 442
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 3 cut(s) 165, 384, 522
AseI ATTAAT 1 cut(s) 626
AspS9I GGNCC 2 cut(s) 440, 586
AsuC2I CCSGG 3 cut(s) 402, 443, 444
AsuHPI GGTGA 3 cut(s) 284, 305, 518
AvaI CYCGRG 1 cut(s) 442
AvaII GGWCC 1 cut(s) 586
BaeGI GKGCMC 1 cut(s) 449
BauI CACGAG 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 3 cut(s) 177, 396, 534
BccI CCATC 7 cut(s) 101, 147, 210, 227, 284, 497, 521
BciT130I CCWGG 2 cut(s) 438, 517
BcnI CCSGG 3 cut(s) 402, 443, 444
BfaI CTAG 3 cut(s) 150, 320, 631
BisI GCNGC 4 cut(s) 166, 385, 523, 571
BlsI GCNGC 4 cut(s) 167, 386, 524, 572
Bme1390I CCNGG 5 cut(s) 402, 438, 443, 444, 517
Bme18I GGWCC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 442
BmgT120I GGNCC 2 cut(s) 440, 586
BmrFI CCNGG 5 cut(s) 402, 438, 443, 444, 517
BmsI GCATC 3 cut(s) 112, 134, 155
BpiI GAAGAC 1 cut(s) 617
BpmI CTGGAG 1 cut(s) 435
BpuMI CCSGG 3 cut(s) 402, 443, 444
BsaAI YACGTR 1 cut(s) 541
BsaJI CCNNGG 3 cut(s) 224, 436, 442
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 3 cut(s) 442, 443, 458
Bse118I RCCGGY 2 cut(s) 269, 583
Bse1I ACTGG 2 cut(s) 452, 619
Bse3DI GCAATG 2 cut(s) 594, 625
BseBI CCWGG 2 cut(s) 438, 517
BseDI CCNNGG 3 cut(s) 224, 436, 442
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 3 cut(s) 442, 443, 458
BseMI GCAATG 2 cut(s) 594, 625
BseNI ACTGG 2 cut(s) 452, 619
BseSI GKGCMC 1 cut(s) 449
BseXI GCAGC 3 cut(s) 177, 396, 534
BsgI GTGCAG 2 cut(s) 132, 541
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 349
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 6 cut(s) 173, 270, 401, 410, 443, 584
BslFI GGGAC 3 cut(s) 242, 269, 337
BslI CCNNNNNNNGG 3 cut(s) 442, 443, 458
BsmFI GGGAC 3 cut(s) 242, 269, 337
BsnI GGCC 1 cut(s) 441
BsoBI CYCGRG 1 cut(s) 442
Bsp1286I GDGCHC 2 cut(s) 349, 449
Bsp143I GATC 9 cut(s) 13, 33, 169, 191, 196, 256, 274, 353, 424
Bsp19I CCATGG 1 cut(s) 224
BspACI CCGC 2 cut(s) 552, 570
BspANI GGCC 1 cut(s) 441
BspFNI CGCG 1 cut(s) 38
BspPI GGATC 4 cut(s) 164, 204, 361, 432
BspQI GCTCTTC 1 cut(s) 487
BsrDI GCAATG 2 cut(s) 594, 625
BsrFI RCCGGY 2 cut(s) 269, 583
BsrI ACTGG 2 cut(s) 452, 619
BssAI RCCGGY 2 cut(s) 269, 583
BssECI CCNNGG 3 cut(s) 224, 436, 442
BssMI GATC 9 cut(s) 13, 33, 169, 191, 196, 256, 274, 353, 424
BssSI CACGAG 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 130
Bst2UI CCWGG 2 cut(s) 438, 517
Bst4CI ACNGT 1 cut(s) 578
Bst6I CTCTTC 1 cut(s) 487
BstBAI YACGTR 1 cut(s) 541
BstC8I GCNNGC 3 cut(s) 267, 306, 310
BstDSI CCRYGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 125
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 9 cut(s) 16, 36, 172, 194, 199, 259, 277, 356, 427
BstMBI GATC 9 cut(s) 13, 33, 169, 191, 196, 256, 274, 353, 424
BstMWI GCNNNNNNNGC 1 cut(s) 384
BstNI CCWGG 2 cut(s) 438, 517
BstNSI RCATGY 1 cut(s) 81
BstSCI CCNGG 5 cut(s) 400, 436, 441, 442, 515
BstSLI GKGCMC 1 cut(s) 449
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 3 cut(s) 177, 396, 534
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 2 cut(s) 353, 424
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 2 cut(s) 353, 424
BsuRI GGCC 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 48, 120, 459
Cac8I GCNNGC 3 cut(s) 267, 306, 310
Cfr10I RCCGGY 2 cut(s) 269, 583
Cfr13I GGNCC 2 cut(s) 440, 586
Cfr9I CCCGGG 1 cut(s) 442
CpoI CGGWCCG 1 cut(s) 586
CseI GACGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 239
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CspI CGGWCCG 1 cut(s) 586
CviAII CATG 3 cut(s) 78, 225, 350
CviJI RGCY 6 cut(s) 207, 308, 387, 441, 475, 558
CviKI_1 RGCY 6 cut(s) 207, 308, 387, 441, 475, 558
CviQI GTAC 1 cut(s) 239
DpnI GATC 9 cut(s) 15, 35, 171, 193, 198, 258, 276, 355, 426
DpnII GATC 9 cut(s) 13, 33, 169, 191, 196, 256, 274, 353, 424
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 586
Eco88I CYCGRG 1 cut(s) 442
EcoRII CCWGG 2 cut(s) 436, 515
EcoT14I CCWWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 3 cut(s) 81, 228, 353
FaiI YATR 9 cut(s) 23, 79, 143, 226, 351, 372, 472, 602, 606
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FaqI GGGAC 3 cut(s) 242, 269, 337
FatI CATG 3 cut(s) 77, 224, 349
Fnu4HI GCNGC 4 cut(s) 166, 385, 523, 571
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 4 cut(s) 166, 385, 523, 571
FspBI CTAG 3 cut(s) 150, 320, 631
GluI GCNGC 4 cut(s) 166, 385, 523, 571
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 441
HapII CCGG 6 cut(s) 173, 270, 401, 410, 443, 584
HgaI GACGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 81, 228, 353
HinfI GANTC 1 cut(s) 220
HpaII CCGG 6 cut(s) 173, 270, 401, 410, 443, 584
HphI GGTGA 3 cut(s) 284, 305, 518
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 5 cut(s) 196, 201, 337, 487, 590
Hpy188III TCNNGA 4 cut(s) 11, 31, 150, 189
Hpy8I GTNNAC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 578
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 4 cut(s) 77, 113, 125, 522
HpyF10VI GCNNNNNNNGC 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 3 cut(s) 81, 228, 353
Kzo9I GATC 9 cut(s) 13, 33, 169, 191, 196, 256, 274, 353, 424
LguI GCTCTTC 1 cut(s) 487
Lsp1109I GCAGC 3 cut(s) 177, 396, 534
LweI GCATC 3 cut(s) 112, 134, 155
MaeI CTAG 3 cut(s) 150, 320, 631
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 1 cut(s) 293
MalI GATC 9 cut(s) 15, 35, 171, 193, 198, 258, 276, 355, 426
MboI GATC 9 cut(s) 13, 33, 169, 191, 196, 256, 274, 353, 424
MboII GAAGA 3 cut(s) 474, 502, 622
MflI RGATCY 2 cut(s) 353, 424
MhlI GDGCHC 2 cut(s) 349, 449
MluCI AATT 1 cut(s) 623
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 3 cut(s) 130, 139, 411
Mph1103I ATGCAT 1 cut(s) 127
MseI TTAA 1 cut(s) 626
MslI CAYNNNNRTG 4 cut(s) 130, 151, 452, 543
MspA1I CMGCKG 1 cut(s) 387
MspI CCGG 6 cut(s) 173, 270, 401, 410, 443, 584
MspR9I CCNGG 5 cut(s) 402, 438, 443, 444, 517
MvaI CCWGG 2 cut(s) 438, 517
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 384
NciI CCSGG 3 cut(s) 402, 443, 444
NcoI CCATGG 1 cut(s) 224
NdeII GATC 9 cut(s) 13, 33, 169, 191, 196, 256, 274, 353, 424
NlaIII CATG 3 cut(s) 81, 228, 353
NmuCI GTSAC 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 1 cut(s) 81
OliI CACNNNNGTG 2 cut(s) 452, 543
PciSI GCTCTTC 1 cut(s) 487
PkrI GCNGC 4 cut(s) 167, 386, 524, 572
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 541
PshBI ATTAAT 1 cut(s) 626
Psp6I CCWGG 2 cut(s) 436, 515
PspGI CCWGG 2 cut(s) 436, 515
PspPI GGNCC 2 cut(s) 440, 586
PsuI RGATCY 2 cut(s) 353, 424
PvuII CAGCTG 1 cut(s) 387
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 4 cut(s) 130, 151, 452, 543
Rsr2I CGGWCCG 1 cut(s) 586
RsrII CGGWCCG 1 cut(s) 586
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 1 cut(s) 626
SatI GCNGC 4 cut(s) 166, 385, 523, 571
Sau3AI GATC 9 cut(s) 13, 33, 169, 191, 196, 256, 274, 353, 424
Sau96I GGNCC 2 cut(s) 440, 586
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 5 cut(s) 402, 438, 443, 444, 517
SduI GDGCHC 2 cut(s) 349, 449
SetI ASST 6 cut(s) 10, 244, 389, 500, 543, 547
SfaNI GCATC 3 cut(s) 112, 134, 155
SinI GGWCC 1 cut(s) 586
SmaI CCCGGG 1 cut(s) 444
SmiMI CAYNNNNRTG 4 cut(s) 130, 151, 452, 543
SrfI GCCCGGGC 1 cut(s) 444
Sse9I AATT 1 cut(s) 623
SsiI CCGC 2 cut(s) 552, 570
SspMI CTAG 3 cut(s) 150, 320, 631
StyD4I CCNGG 5 cut(s) 400, 436, 441, 442, 515
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 578
TaiI ACGT 1 cut(s) 543
TaqI TCGA 3 cut(s) 214, 314, 391
TasI AATT 1 cut(s) 623
TauI GCSGC 1 cut(s) 573
Tru1I TTAA 1 cut(s) 626
Tru9I TTAA 1 cut(s) 626
TscAI CASTG 3 cut(s) 55, 120, 459
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 3 cut(s) 165, 384, 522
Tsp45I GTSAC 1 cut(s) 293
TspGWI ACGGA 2 cut(s) 312, 437
TspMI CCCGGG 1 cut(s) 442
TspRI CASTG 3 cut(s) 55, 120, 459
VpaK11BI GGWCC 1 cut(s) 586
VspI ATTAAT 1 cut(s) 626
XbaI TCTAGA 1 cut(s) 149
XceI RCATGY 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XmaI CCCGGG 1 cut(s) 442
XspI CTAG 3 cut(s) 150, 320, 631
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.