Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000576

Physical Location & Seq

Genomic Coordinates Forward (+)

15090112 .. 15090552

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG148200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGTGCAAGATGCGGCCTCGTTTACAGGGATGGCATCTAGGCGGGGGTTGGGTTGGTCAAGATCGGATCAGAAGGGTCGATTCTGATCGGGTCCAAGAGACGATGGTGCATCTACTACAGGTGTTGATATTTGGTGTGCCGCCATCTTGGAAGGTGTGCTGCTTTGCTCGGACTCGAAGACTGCTGCTTTGGATGGCGGTGCTATTAGGTATAATGGCTGCAAGTGTGATGGCAAGGGCGGCTGTCAAATTGTGTCGACTACCGGAGGTAAGGATGACCCTGCTTTCCTCGGGCCTAGACCCTTTGTTGGCGGGGATGATAGCTTGGTTCTACTCGACGGTGGTTGGATGTACAACATCAGTGGAAGCGGCGGTGACTTGCAAATCAGAGACGATGGTGGGCTGGAATAGAGGGGTGGAGTCTATGGGGTGTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.21

Weight (kDa)

9.72

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496101
rosa_laevigata	RLG00000001000 RLG00000003686 RLG00000004631 RLG00000004905 RLG00000005430 RLG00000005713 RLG00000007389 RLG00000011894 RLG00000014857 RLG00000017726 RLG00000020028 RLG00000020869 RLG00000021046 RLG00000023109 RLG00000026629 RLG00000027568 RLG00000027741 RLG00000027989 RLG00000029466 RLG00000032523 RLG00000034953 RLG00000035012 RLG00000036930
rosa_multiflora	Rmu_sc0001298.1_g000014 Rmu_sc0010937.1_g000002
rosa_roxburghii	Rroxscaffold_3G00236180 Rroxscaffold_4G00282370 Rroxscaffold_4G00287700 Rroxscaffold_5G00344480 Rroxscaffold_6G00420630
rosa_rugosa	Rorug04G0441100 Rorug07G0282000
rosa_samantha	Rh1AG357100 Rh1BG076300 Rh1BG240500 Rh1BG369300 Rh1CG024800 Rh1CG092500 Rh1DG099000 Rh1DG268800 Rh2AG264600 Rh2AG530800 Rh2AG530900 Rh2BG059300 Rh2BG494200 Rh2BG521900 Rh2BG545400 Rh2CG061100 Rh2CG515200 Rh2DG271900 Rh2DG503300 Rh2DG531800 Rh3AG105800 Rh3AG326600 Rh3BG110000 Rh3CG111500 Rh3DG111600 Rh4AG180600 Rh4CG191700 Rh4DG037400 Rh5AG112900 Rh5AG149800 Rh5AG470600 Rh5BG490300 Rh5BG551700 Rh5CG160600 Rh5CG514300 Rh5CG574500 Rh5DG108700 Rh5DG114200 Rh5DG148200 Rh5DG298500 Rh5DG416900 Rh6CG280200 Rh6CG397900 Rh6DG215700 Rh6DG231300 Rh6DG272800 Rh7CG104800 Rh7CG247000 Rh7DG211100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	8 cut(s)	16, 45, 143, 200, 242, 314, 371, 374
AclWI	GGATC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	1 cut(s)	310
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw26I	GTCTC	2 cut(s)	95, 386
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	2 cut(s)	17, 295
ApeKI	GCWGC	3 cut(s)	162, 187, 221
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspS9I	GGNCC	2 cut(s)	94, 295
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	3 cut(s)	149, 174, 208
BccI	CCATC	6 cut(s)	27, 100, 154, 190, 226, 391
BcoDI	GTCTC	2 cut(s)	95, 386
BfaI	CTAG	2 cut(s)	41, 299
BfmI	CTRYAG	1 cut(s)	119
BisI	GCNGC	7 cut(s)	17, 143, 163, 188, 222, 243, 372
BlsI	GCNGC	7 cut(s)	18, 144, 164, 189, 223, 244, 373
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	94, 295
BmiI	GGNNCC	1 cut(s)	95
BmsI	GCATC	3 cut(s)	3, 46, 121
BpiI	GAAGAC	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	5 cut(s)	38, 201, 282, 324, 356
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	149, 174, 208
BshFI	GGCC	2 cut(s)	19, 297
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	95, 386
BsmBI	CGTCTC	2 cut(s)	95, 386
BsnI	GGCC	2 cut(s)	19, 297
BsoBI	CYCGRG	1 cut(s)	292
Bsp1407I	TGTACA	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	64, 69, 88
BspACI	CCGC	8 cut(s)	16, 45, 143, 200, 242, 314, 371, 374
BspANI	GGCC	2 cut(s)	19, 297
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	3 cut(s)	64, 69, 88
Bst4CI	ACNGT	1 cut(s)	343
BstAUI	TGTACA	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	5 cut(s)	38, 201, 282, 324, 356
BstKTI	GATC	3 cut(s)	67, 72, 91
BstMAI	GTCTC	2 cut(s)	95, 386
BstMBI	GATC	3 cut(s)	64, 69, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	149, 174, 208
BstV2I	GAAGAC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	19, 297
BtsCI	GGATG	5 cut(s)	38, 201, 282, 324, 356
BtsIMutI	CAGTG	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	94, 295
Csp6I	GTAC	1 cut(s)	354
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviJI	RGCY	6 cut(s)	19, 221, 245, 297, 326, 405
CviKI_1	RGCY	6 cut(s)	19, 221, 245, 297, 326, 405
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	3 cut(s)	66, 71, 90
DpnII	GATC	3 cut(s)	64, 69, 88
Eco47I	GGWCC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	292
Esp3I	CGTCTC	2 cut(s)	95, 386
FaiI	YATR	2 cut(s)	215, 428
FauI	CCCGC	2 cut(s)	38, 307
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	7 cut(s)	17, 143, 163, 188, 222, 243, 372
FokI	GGATG	5 cut(s)	45, 208, 289, 331, 363
Fsp4HI	GCNGC	7 cut(s)	17, 143, 163, 188, 222, 243, 372
FspBI	CTAG	2 cut(s)	41, 299
GluI	GCNGC	7 cut(s)	17, 143, 163, 188, 222, 243, 372
HaeIII	GGCC	2 cut(s)	19, 297
HapII	CCGG	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	260
HindII	GTYRAC	1 cut(s)	260
HinfI	GANTC	3 cut(s)	83, 175, 422
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	2 cut(s)	26, 260
Hpy188I	TCNGA	5 cut(s)	69, 74, 88, 174, 391
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	2 cut(s)	26, 260
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	69, 148
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	4 cut(s)	9, 112, 224, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	438
Kzo9I	GATC	3 cut(s)	64, 69, 88
LpnPI	CCDG	5 cut(s)	14, 107, 279, 296, 391
Lsp1109I	GCAGC	3 cut(s)	149, 174, 208
LweI	GCATC	3 cut(s)	3, 46, 121
MaeI	CTAG	2 cut(s)	41, 299
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	66, 71, 90
MboI	GATC	3 cut(s)	64, 69, 88
MboII	GAAGA	1 cut(s)	192
MluCI	AATT	1 cut(s)	251
MlyI	GAGTC	2 cut(s)	169, 431
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	4 cut(s)	30, 262, 301, 407
MspI	CCGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	3 cut(s)	64, 69, 88
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	7 cut(s)	18, 144, 164, 189, 223, 244, 373
PleI	GAGTC	2 cut(s)	169, 430
PpsI	GAGTC	2 cut(s)	169, 430
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	94, 295
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	258
SatI	GCNGC	7 cut(s)	17, 143, 163, 188, 222, 243, 372
Sau3AI	GATC	3 cut(s)	64, 69, 88
Sau96I	GGNCC	2 cut(s)	94, 295
SchI	GAGTC	2 cut(s)	169, 431
SetI	ASST	5 cut(s)	126, 159, 214, 273, 328
SfaNI	GCATC	3 cut(s)	3, 46, 121
SfcI	CTRYAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	8 cut(s)	16, 45, 143, 200, 242, 314, 371, 374
SspMI	CTAG	2 cut(s)	41, 299
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	4 cut(s)	81, 178, 259, 338
TasI	AATT	1 cut(s)	251
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	4 cut(s)	19, 145, 245, 374
TfiI	GAWTC	1 cut(s)	83
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	3 cut(s)	162, 187, 221
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	259
XspI	CTAG	2 cut(s)	41, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.