RLG00000020028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000576
Physical Location & Seq
Reverse (-)
60297086 .. 60297817
732 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020028

Sequence Viewer

Length: 732 bp
ATGGAGAAAATTTCCGGCTTTGGCCTCTTCATCCTTGTCTTCGTTGTCTTCGAAAGCAGTGCCTCTTTGGAGGGGAGTTTGGGCGATGCTGAGGCTATGTTGAGTTTAGGGTTTGTCGGCGATGTTGTTCCTGCATCTGCATTCAATATTGATGCGACAGATGCGGCCTTCAGGCTGGGGATGACATCTACATGGCAATTGAGCAGCGATTTGGTCTTGGTTTGGTCAAGATCGGATTGGAAAGGTCGTTTCCAATTGAGCCCACGGGACGTTGGTGTACCTGTTACAGGTGATGATCGTTGGTGTGTCAGTGATCTTGCTATTCCCGATGGTGGCGGAGTGCTGGTTTGCACAGATTCAGTGATTGCTGCTGCTGGTGGTGGTGGTGCTCATGGGTATTTCAGCTGCAAGGATGGAAGCAAGAGCCGCTGTCAAATCAAATCGGGCCTTCCGGAGATGTGGGCAGATATGTTCTTCTCCGACCCGGGTAGCTCGTTGGAGGGGCTGTTGGCGTGGCTCTGCTCATCGAAGAAGATTACCTCTGGGGATACTGACTGGTGCAGCAACGGGGTCTACCACGTCGGCGATGGTGGAGGCTTGCTGGTTGGCGGCGAAGGTGTGCTAGTCCTGTGGGGTGGATCTTGTGGGGTGCCCTTAGCAATTTCTGCTTGGCCCATCTGGGTGTCAATCTGGTCTGTGGGCTTTACACACTGCTGGACTTGGGTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

25.52

Weight (kDa)

4.42

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 649
AccI GTMKAC 1 cut(s) 573
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 4 cut(s) 164, 336, 427, 609
AclWI GGATC 1 cut(s) 646
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 154
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 2 cut(s) 287, 332
AgsI TTSAA 1 cut(s) 145
AjiI CACGTC 1 cut(s) 580
AluBI AGCT 2 cut(s) 405, 492
AluI AGCT 2 cut(s) 405, 492
Alw21I GWGCWC 1 cut(s) 391
AlwI GGATC 1 cut(s) 646
Ama87I CYCGRG 1 cut(s) 484
Aor13HI TCCGGA 1 cut(s) 451
AoxI GGCC 4 cut(s) 22, 165, 445, 671
ApeKI GCWGC 5 cut(s) 204, 368, 371, 405, 561
ApoI RAATTY 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 445, 672
AsuC2I CCSGG 2 cut(s) 485, 486
AsuHPI GGTGA 1 cut(s) 302
AsuII TTCGAA 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 654
BanI GGYRCC 1 cut(s) 649
BanII GRGCYC 1 cut(s) 263
BbsI GAAGAC 2 cut(s) 31, 40
Bbv12I GWGCWC 1 cut(s) 391
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 5 cut(s) 216, 355, 358, 392, 573
BccI CCATC 4 cut(s) 323, 407, 581, 683
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciVI GTATCC 1 cut(s) 541
BcnI CCSGG 2 cut(s) 485, 486
BfaI CTAG 2 cut(s) 623, 730
BfuI GTATCC 1 cut(s) 541
BisI GCNGC 8 cut(s) 165, 205, 369, 372, 406, 427, 562, 610
BlsI GCNGC 8 cut(s) 166, 206, 370, 373, 407, 428, 563, 611
Bme1390I CCNGG 2 cut(s) 485, 486
BmeT110I CYCGRG 1 cut(s) 484
BmgBI CACGTC 1 cut(s) 580
BmgT120I GGNCC 2 cut(s) 445, 672
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 2 cut(s) 485, 486
BmsI GCATC 4 cut(s) 76, 142, 143, 151
BpiI GAAGAC 2 cut(s) 31, 40
Bpu10I CCTNAGC 2 cut(s) 90, 655
Bpu14I TTCGAA 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 485, 486
BsaJI CCNNGG 2 cut(s) 263, 484
BsaWI WCCGGW 1 cut(s) 451
BsaXI ACNNNNNCTCC 4 cut(s) 330, 360, 491, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 332
Bse1I ACTGG 1 cut(s) 560
BseAI TCCGGA 1 cut(s) 451
BseDI CCNNGG 2 cut(s) 263, 484
BseGI GGATG 3 cut(s) 30, 186, 418
BseLI CCNNNNNNNGG 2 cut(s) 287, 332
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 560
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 5 cut(s) 216, 355, 358, 392, 573
BseYI CCCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 580
BshFI GGCC 4 cut(s) 24, 167, 447, 673
BshNI GGYRCC 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 391
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 3 cut(s) 15, 452, 485
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 287, 332
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 4 cut(s) 24, 167, 447, 673
BsoBI CYCGRG 1 cut(s) 484
Bsp119I TTCGAA 1 cut(s) 51
Bsp1286I GDGCHC 3 cut(s) 263, 391, 654
Bsp13I TCCGGA 1 cut(s) 451
Bsp143I GATC 4 cut(s) 230, 295, 313, 638
BspACI CCGC 4 cut(s) 164, 336, 427, 609
BspANI GGCC 4 cut(s) 24, 167, 447, 673
BspCNI CTCAG 1 cut(s) 82
BspEI TCCGGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 651
BspPI GGATC 1 cut(s) 646
BspT104I TTCGAA 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 649
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 2 cut(s) 263, 484
BssMI GATC 4 cut(s) 230, 295, 313, 638
Bst6I CTCTTC 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 665
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 599
BstDEI CTNAG 2 cut(s) 90, 655
BstDSI CCRYGG 1 cut(s) 263
BstENI CCTNNNNNAGG 1 cut(s) 285
BstF5I GGATG 3 cut(s) 30, 186, 418
BstKTI GATC 4 cut(s) 233, 298, 316, 641
BstMBI GATC 4 cut(s) 230, 295, 313, 638
BstMWI GCNNNNNNNGC 3 cut(s) 161, 426, 665
BstSCI CCNGG 2 cut(s) 483, 484
BstSLI GKGCMC 1 cut(s) 654
BstV1I GCAGC 5 cut(s) 216, 355, 358, 392, 573
BstV2I GAAGAC 2 cut(s) 31, 40
BstX2I RGATCY 1 cut(s) 638
BstYI RGATCY 1 cut(s) 638
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 4 cut(s) 24, 167, 447, 673
BtgI CCRYGG 1 cut(s) 263
BtgZI GCGATG 3 cut(s) 99, 135, 600
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 3 cut(s) 30, 186, 418
BtsI GCAGTG 2 cut(s) 64, 709
BtsIMutI CAGTG 4 cut(s) 64, 316, 366, 709
Cac8I GCNNGC 1 cut(s) 599
Cfr13I GGNCC 2 cut(s) 445, 672
Cfr9I CCCGGG 1 cut(s) 484
Csp6I GTAC 1 cut(s) 278
CviAII CATG 2 cut(s) 192, 392
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 2 cut(s) 90, 655
DpnI GATC 4 cut(s) 232, 297, 315, 640
DpnII GATC 4 cut(s) 230, 295, 313, 638
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 484
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 263
FaeI CATG 2 cut(s) 195, 395
FaiI YATR 4 cut(s) 98, 193, 393, 470
FaqI GGGAC 1 cut(s) 281
FatI CATG 2 cut(s) 191, 391
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 8 cut(s) 165, 205, 369, 372, 406, 427, 562, 610
FokI GGATG 3 cut(s) 17, 193, 425
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 8 cut(s) 165, 205, 369, 372, 406, 427, 562, 610
FspBI CTAG 2 cut(s) 623, 730
GluI GCNGC 8 cut(s) 165, 205, 369, 372, 406, 427, 562, 610
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 4 cut(s) 24, 167, 447, 673
HapII CCGG 3 cut(s) 15, 452, 485
Hin1II CATG 2 cut(s) 195, 395
HinfI GANTC 1 cut(s) 356
HpaII CCGG 3 cut(s) 15, 452, 485
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 2 cut(s) 278, 574
Hpy188I TCNGA 2 cut(s) 235, 481
Hpy188III TCNNGA 3 cut(s) 228, 326, 452
Hpy8I GTNNAC 2 cut(s) 278, 574
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 3 cut(s) 178, 458, 608
HpyCH4IV ACGT 2 cut(s) 270, 579
HpyCH4V TGCA 5 cut(s) 134, 140, 351, 408, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 426, 665
HpyF3I CTNAG 2 cut(s) 90, 655
HpySE526I ACGT 2 cut(s) 270, 579
Hsp92II CATG 2 cut(s) 195, 395
Kpn2I TCCGGA 1 cut(s) 451
Kzo9I GATC 4 cut(s) 230, 295, 313, 638
Lsp1109I GCAGC 5 cut(s) 216, 355, 358, 392, 573
LweI GCATC 4 cut(s) 76, 142, 143, 151
MaeI CTAG 2 cut(s) 623, 730
MaeII ACGT 2 cut(s) 270, 579
MaeIII GTNAC 1 cut(s) 283
MalI GATC 4 cut(s) 232, 297, 315, 640
MboI GATC 4 cut(s) 230, 295, 313, 638
MboII GAAGA 6 cut(s) 19, 31, 40, 466, 541, 544
MfeI CAATTG 2 cut(s) 197, 254
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 3 cut(s) 263, 391, 654
MluCI AATT 4 cut(s) 9, 197, 254, 660
MmeI TCCRAC 2 cut(s) 477, 504
MnlI CCTC 7 cut(s) 35, 64, 73, 85, 493, 550, 587
MroI TCCGGA 1 cut(s) 451
MslI CAYNNNNRTG 2 cut(s) 190, 680
MspA1I CMGCKG 2 cut(s) 405, 429
MspI CCGG 3 cut(s) 15, 452, 485
MspR9I CCNGG 2 cut(s) 485, 486
MunI CAATTG 2 cut(s) 197, 254
Mva1269I GAATGC 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 161, 426, 665
NciI CCSGG 2 cut(s) 485, 486
NdeII GATC 4 cut(s) 230, 295, 313, 638
NlaIII CATG 2 cut(s) 195, 395
NlaIV GGNNCC 1 cut(s) 651
NspV TTCGAA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 8 cut(s) 166, 206, 370, 373, 407, 428, 563, 611
PspFI CCCAGC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 2 cut(s) 445, 672
PsuI RGATCY 1 cut(s) 638
PvuII CAGCTG 1 cut(s) 405
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
RseI CAYNNNNRTG 2 cut(s) 190, 680
SatI GCNGC 8 cut(s) 165, 205, 369, 372, 406, 427, 562, 610
Sau3AI GATC 4 cut(s) 230, 295, 313, 638
Sau96I GGNCC 2 cut(s) 445, 672
ScrFI CCNGG 2 cut(s) 485, 486
SduI GDGCHC 3 cut(s) 263, 391, 654
SetI ASST 9 cut(s) 247, 273, 283, 292, 407, 494, 542, 582, 619
SfaNI GCATC 4 cut(s) 76, 142, 143, 151
SfuI TTCGAA 1 cut(s) 51
SmaI CCCGGG 1 cut(s) 486
SmiMI CAYNNNNRTG 2 cut(s) 190, 680
Sse9I AATT 4 cut(s) 9, 197, 254, 660
SsiI CCGC 4 cut(s) 164, 336, 427, 609
SspI AATATT 1 cut(s) 148
SspMI CTAG 2 cut(s) 623, 730
StyD4I CCNGG 2 cut(s) 483, 484
TaiI ACGT 2 cut(s) 273, 582
TaqI TCGA 2 cut(s) 51, 527
TasI AATT 4 cut(s) 9, 197, 254, 660
TauI GCSGC 3 cut(s) 167, 429, 612
TfiI GAWTC 1 cut(s) 356
TscAI CASTG 4 cut(s) 64, 316, 366, 716
TseI GCWGC 5 cut(s) 204, 368, 371, 405, 561
TspDTI ATGAA 1 cut(s) 19
TspMI CCCGGG 1 cut(s) 484
TspRI CASTG 4 cut(s) 64, 316, 366, 716
XagI CCTNNNNNAGG 1 cut(s) 285
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 584
XmaI CCCGGG 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 2 cut(s) 623, 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.