Rh1BG369300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000576
Physical Location & Seq
Forward (+)
49963720 .. 49964244
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG369300.1

Sequence Viewer

Length: 480 bp
ATGGTGGTGATGGCATATTTTGGTCTGCTTATCCTCTTCTTGATTGCGTTGGGGGACGTTGAGGTTATGTTGAGTTCAGGGGTTGGAGGTGATGTTGTTTCTGCGTCCAAGCCCGATGGTGAAGTGAAAGATGCAGCCTTGTGGGTGGGGATGGCATCTAGATGGCAGATGAGCAGCGATCCGGTCTTGGTTTGGCCAAGATCATATTGGAAAGGTGTCGATCTTTGGCGTGCCGGTGATCTTGCTGTCACGGACGGTGATGGTATGTTGGTTTGCTCGGACTCAAGGACTACTGCTTCTGATGTTGGTGCTCATGGGTATAACAGCTGCAAGTATGGAGGCAAAGGCGGCTGTCAAATCACACCAGGGTTGCCGGAGATGAGGGAGGATCTGCTTTCCTCGTACTCGGGCCTTTCGTTGGCGAGGATGATGGTGTGGCTTTGCCCGTTGGAGGAGATTGCCTCTGATGGTGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.95

Weight (kDa)

4.36

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 348
AclWI GGATC 2 cut(s) 173, 396
AcoI YGGCCR 1 cut(s) 194
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 418, 451
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
Alw21I GWGCWC 1 cut(s) 313
AlwI GGATC 2 cut(s) 173, 396
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 2 cut(s) 194, 409
ApeKI GCWGC 3 cut(s) 134, 174, 327
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 5 cut(s) 19, 101, 131, 248, 269
AvaI CYCGRG 1 cut(s) 406
BalI TGGCCA 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 3 cut(s) 146, 186, 314
BccI CCATC 7 cut(s) 4, 110, 145, 156, 254, 424, 461
BciT130I CCWGG 1 cut(s) 366
BfaI CTAG 1 cut(s) 159
BisI GCNGC 4 cut(s) 135, 175, 328, 349
BlsI GCNGC 4 cut(s) 136, 176, 329, 350
Bme1390I CCNGG 1 cut(s) 366
BmeT110I CYCGRG 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 2 cut(s) 121, 164
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BpuEI CTTGAG 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 451
Bse118I RCCGGY 1 cut(s) 233
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 2 cut(s) 156, 432
BseLI CCNNNNNNNGG 2 cut(s) 418, 451
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 3 cut(s) 146, 186, 314
BshFI GGCC 2 cut(s) 196, 411
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 406
BsiSI CCGG 3 cut(s) 182, 234, 374
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 418, 451
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 2 cut(s) 196, 411
BsoBI CYCGRG 1 cut(s) 406
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 5 cut(s) 178, 200, 220, 238, 388
BspACI CCGC 1 cut(s) 348
BspANI GGCC 2 cut(s) 196, 411
BspPI GGATC 2 cut(s) 173, 396
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 5 cut(s) 178, 200, 220, 238, 388
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 231
BstF5I GGATG 2 cut(s) 156, 432
BstKTI GATC 5 cut(s) 181, 203, 223, 241, 391
BstMBI GATC 5 cut(s) 178, 200, 220, 238, 388
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 364
BstV1I GCAGC 3 cut(s) 146, 186, 314
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 2 cut(s) 196, 411
BtsCI GGATG 2 cut(s) 156, 432
Cac8I GCNNGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 403
CviAII CATG 1 cut(s) 314
CviJI RGCY 7 cut(s) 112, 137, 196, 327, 351, 411, 439
CviKI_1 RGCY 7 cut(s) 112, 137, 196, 327, 351, 411, 439
CviQI GTAC 1 cut(s) 403
DpnI GATC 5 cut(s) 180, 202, 222, 240, 390
DpnII GATC 5 cut(s) 178, 200, 220, 238, 388
EaeI YGGCCR 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 364
FaeI CATG 1 cut(s) 317
FaiI YATR 7 cut(s) 16, 68, 205, 266, 315, 321, 336
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 135, 175, 328, 349
FokI GGATG 2 cut(s) 163, 439
Fsp4HI GCNGC 4 cut(s) 135, 175, 328, 349
FspBI CTAG 1 cut(s) 159
GluI GCNGC 4 cut(s) 135, 175, 328, 349
HaeIII GGCC 2 cut(s) 196, 411
HapII CCGG 3 cut(s) 182, 234, 374
HgaI GACGC 1 cut(s) 93
Hin1II CATG 1 cut(s) 317
HinfI GANTC 1 cut(s) 281
HpaII CCGG 3 cut(s) 182, 234, 374
HphI GGTGA 5 cut(s) 19, 101, 131, 248, 269
Hpy188I TCNGA 3 cut(s) 280, 301, 466
Hpy188III TCNNGA 2 cut(s) 40, 159
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 134, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 317
Kzo9I GATC 5 cut(s) 178, 200, 220, 238, 388
LpnPI CCDG 6 cut(s) 63, 195, 247, 351, 378, 387
Lsp1109I GCAGC 3 cut(s) 146, 186, 314
LweI GCATC 2 cut(s) 121, 164
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 247
MalI GATC 5 cut(s) 180, 202, 222, 240, 390
MboI GATC 5 cut(s) 178, 200, 220, 238, 388
MboII GAAGA 1 cut(s) 28
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 196
MluNI TGGCCA 1 cut(s) 196
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 2 cut(s) 64, 429
Mox20I TGGCCA 1 cut(s) 196
MscI TGGCCA 1 cut(s) 196
MseI TTAA 1 cut(s) 478
MslI CAYNNNNRTG 1 cut(s) 160
Msp20I TGGCCA 1 cut(s) 196
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 3 cut(s) 182, 234, 374
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeII GATC 5 cut(s) 178, 200, 220, 238, 388
NlaIII CATG 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PkrI GCNGC 4 cut(s) 136, 176, 329, 350
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspPI GGNCC 1 cut(s) 409
PsuI RGATCY 1 cut(s) 388
PvuII CAGCTG 1 cut(s) 327
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 478
SatI GCNGC 4 cut(s) 135, 175, 328, 349
Sau3AI GATC 5 cut(s) 178, 200, 220, 238, 388
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 313
SetI ASST 5 cut(s) 60, 66, 91, 217, 329
SfaNI GCATC 2 cut(s) 121, 164
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SsiI CCGC 1 cut(s) 348
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 219
TauI GCSGC 1 cut(s) 351
Tru1I TTAA 1 cut(s) 478
Tru9I TTAA 1 cut(s) 478
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 3 cut(s) 134, 174, 327
Tsp45I GTSAC 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 266
XbaI TCTAGA 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.